data_BNG
#

_chem_comp.id                                   BNG
_chem_comp.name                                 "nonyl beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C15 H30 O6"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        "Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       306.395
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BNG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1EHK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BNG  Beta-NONYLGLUCOSIDE       PDB  ?  
2  BNG  "nonyl beta-D-glucoside"  PDB  ?  
3  BNG  "nonyl D-glucoside"       PDB  ?  
4  BNG  "nonyl glucoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BNG  C1      C1      C  0  1  N  N  R   97.483  10.394  31.666   0.640   0.198  -2.260  C1      BNG   1  
BNG  C2      C2      C  0  1  N  N  R   98.660   9.470  32.079   1.506  -0.211  -3.454  C2      BNG   2  
BNG  C3      C3      C  0  1  N  N  S   98.820   8.402  31.007   0.844   0.284  -4.744  C3      BNG   3  
BNG  C4      C4      C  0  1  N  N  S   97.513   7.623  30.951  -0.600  -0.227  -4.781  C4      BNG   4  
BNG  C5      C5      C  0  1  N  N  R   96.361   8.595  30.594  -1.307   0.182  -3.487  C5      BNG   5  
BNG  C6      C6      C  0  1  N  N  N   95.040   7.818  30.534  -2.759  -0.296  -3.529  C6      BNG   6  
BNG  "C1'"   "C1'"   C  0  1  N  N  N   98.148  12.569  32.183   0.418   0.181   0.023  "C1'"   BNG   7  
BNG  "C2'"   "C2'"   C  0  1  N  N  N   97.914  13.818  33.044   1.034  -0.249   1.355  "C2'"   BNG   8  
BNG  "C3'"   "C3'"   C  0  1  N  N  N   96.526  14.391  32.841   0.125   0.191   2.504  "C3'"   BNG   9  
BNG  "C4'"   "C4'"   C  0  1  N  N  N   96.446  15.844  33.292   0.741  -0.240   3.836  "C4'"   BNG  10  
BNG  "C5'"   "C5'"   C  0  1  N  N  N   95.085  16.439  32.952  -0.167   0.200   4.985  "C5'"   BNG  11  
BNG  "C6'"   "C6'"   C  0  1  N  N  N   95.058  17.949  33.134   0.448  -0.230   6.318  "C6'"   BNG  12  
BNG  "C7'"   "C7'"   C  0  1  N  N  N   93.750  18.535  32.608  -0.460   0.210   7.466  "C7'"   BNG  13  
BNG  "C8'"   "C8'"   C  0  1  N  N  N   93.747  20.058  32.642   0.155  -0.220   8.799  "C8'"   BNG  14  
BNG  "C9'"   "C9'"   C  0  1  N  N  N   92.474  20.575  31.993  -0.753   0.220   9.948  "C9'"   BNG  15  
BNG  O1      O1      O  0  1  N  N  N   97.356  11.452  32.609   1.267  -0.230  -1.049  O1      BNG  16  
BNG  O2      O2      O  0  1  N  N  N   99.871  10.230  32.177   2.803   0.374  -3.327  O2      BNG  17  
BNG  O3      O3      O  0  1  N  N  N   99.903   7.525  31.341   1.558  -0.215  -5.876  O3      BNG  18  
BNG  O4      O4      O  0  1  N  N  N   97.609   6.590  29.961  -1.283   0.342  -5.899  O4      BNG  19  
BNG  O5      O5      O  0  1  N  N  N   96.271   9.649  31.552  -0.646  -0.406  -2.368  O5      BNG  20  
BNG  O6      O6      O  0  1  N  N  N   93.956   8.644  30.152  -3.424   0.091  -2.324  O6      BNG  21  
BNG  H1      H1      H  0  1  N  N  N   97.695  10.835  30.664   0.531   1.283  -2.247  H1      BNG  22  
BNG  H2      H2      H  0  1  N  N  N   98.449   9.004  33.070   1.597  -1.296  -3.484  H2      BNG  23  
BNG  H3      H3      H  0  1  N  N  N   99.048   8.864  30.018   0.846   1.374  -4.762  H3      BNG  24  
BNG  H4      H4      H  0  1  N  N  N   97.309   7.153  31.941  -0.600  -1.313  -4.868  H4      BNG  25  
BNG  H5      H5      H  0  1  N  N  N   96.569   9.051  29.598  -1.286   1.268  -3.390  H5      BNG  26  
BNG  H61     H61     H  0  1  N  N  N   95.124   6.927  29.868  -3.265   0.153  -4.383  H61     BNG  27  
BNG  H62     H62     H  0  1  N  N  N   94.832   7.298  31.498  -2.782  -1.381  -3.623  H62     BNG  28  
BNG  "H1'1"  "H1'1"  H  0  0  N  N  N   97.982  12.789  31.102  -0.562  -0.282  -0.090  "H1'1"  BNG  29  
BNG  "H1'2"  "H1'2"  H  0  0  N  N  N   99.230  12.303  32.147   0.311   1.265   0.006  "H1'2"  BNG  30  
BNG  "H2'1"  "H2'1"  H  0  0  N  N  N   98.113  13.611  34.121   2.014   0.213   1.469  "H2'1"  BNG  31  
BNG  "H2'2"  "H2'2"  H  0  0  N  N  N   98.700  14.587  32.864   1.141  -1.334   1.372  "H2'2"  BNG  32  
BNG  "H3'1"  "H3'1"  H  0  0  N  N  N   96.187  14.273  31.785  -0.854  -0.272   2.390  "H3'1"  BNG  33  
BNG  "H3'2"  "H3'2"  H  0  0  N  N  N   95.750  13.766  33.342   0.018   1.275   2.487  "H3'2"  BNG  34  
BNG  "H4'1"  "H4'1"  H  0  0  N  N  N   96.686  15.954  34.375   1.721   0.223   3.950  "H4'1"  BNG  35  
BNG  "H4'2"  "H4'2"  H  0  0  N  N  N   97.280  16.453  32.872   0.848  -1.324   3.853  "H4'2"  BNG  36  
BNG  "H5'1"  "H5'1"  H  0  0  N  N  N   94.763  16.150  31.924  -1.147  -0.262   4.871  "H5'1"  BNG  37  
BNG  "H5'2"  "H5'2"  H  0  0  N  N  N   94.272  15.947  33.535  -0.274   1.285   4.968  "H5'2"  BNG  38  
BNG  "H6'1"  "H6'1"  H  0  0  N  N  N   95.243  18.240  34.194   1.428   0.232   6.431  "H6'1"  BNG  39  
BNG  "H6'2"  "H6'2"  H  0  0  N  N  N   95.945  18.436  32.667   0.555  -1.315   6.334  "H6'2"  BNG  40  
BNG  "H7'1"  "H7'1"  H  0  0  N  N  N   93.519  18.153  31.585  -1.440  -0.252   7.353  "H7'1"  BNG  41  
BNG  "H7'2"  "H7'2"  H  0  0  N  N  N   92.872  18.117  33.154  -0.567   1.295   7.450  "H7'2"  BNG  42  
BNG  "H8'1"  "H8'1"  H  0  0  N  N  N   93.886  20.457  33.673   1.135   0.242   8.913  "H8'1"  BNG  43  
BNG  "H8'2"  "H8'2"  H  0  0  N  N  N   94.663  20.492  32.178   0.262  -1.305   8.816  "H8'2"  BNG  44  
BNG  "H9'1"  "H9'1"  H  0  0  N  N  N   92.471  21.689  32.017  -0.314  -0.086  10.897  "H9'1"  BNG  45  
BNG  "H9'2"  "H9'2"  H  0  0  N  N  N   92.334  20.175  30.961  -0.860   1.305   9.931  "H9'2"  BNG  46  
BNG  "H9'3"  "H9'3"  H  0  0  N  N  N   91.557  20.140  32.456  -1.733  -0.242   9.834  "H9'3"  BNG  47  
BNG  HO2     HO2     H  0  1  N  Y  N  100.591   9.664  32.429   3.183   0.036  -2.504  HO2     BNG  48  
BNG  HO3     HO3     H  0  1  N  Y  N  100.002   6.858  30.671   2.459   0.130  -5.813  HO3     BNG  49  
BNG  HO4     HO4     H  0  1  N  Y  N   96.793   6.103  29.926  -0.805   0.060  -6.692  HO4     BNG  50  
BNG  HO6     HO6     H  0  1  N  Y  N   93.137   8.162  30.114  -4.334  -0.228  -2.392  HO6     BNG  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BNG  C1     C2      SING  N  N   1  
BNG  C1     O1      SING  N  N   2  
BNG  C1     O5      SING  N  N   3  
BNG  C1     H1      SING  N  N   4  
BNG  C2     C3      SING  N  N   5  
BNG  C2     O2      SING  N  N   6  
BNG  C2     H2      SING  N  N   7  
BNG  C3     C4      SING  N  N   8  
BNG  C3     O3      SING  N  N   9  
BNG  C3     H3      SING  N  N  10  
BNG  C4     C5      SING  N  N  11  
BNG  C4     O4      SING  N  N  12  
BNG  C4     H4      SING  N  N  13  
BNG  C5     C6      SING  N  N  14  
BNG  C5     O5      SING  N  N  15  
BNG  C5     H5      SING  N  N  16  
BNG  C6     O6      SING  N  N  17  
BNG  C6     H61     SING  N  N  18  
BNG  C6     H62     SING  N  N  19  
BNG  "C1'"  "C2'"   SING  N  N  20  
BNG  "C1'"  O1      SING  N  N  21  
BNG  "C1'"  "H1'1"  SING  N  N  22  
BNG  "C1'"  "H1'2"  SING  N  N  23  
BNG  "C2'"  "C3'"   SING  N  N  24  
BNG  "C2'"  "H2'1"  SING  N  N  25  
BNG  "C2'"  "H2'2"  SING  N  N  26  
BNG  "C3'"  "C4'"   SING  N  N  27  
BNG  "C3'"  "H3'1"  SING  N  N  28  
BNG  "C3'"  "H3'2"  SING  N  N  29  
BNG  "C4'"  "C5'"   SING  N  N  30  
BNG  "C4'"  "H4'1"  SING  N  N  31  
BNG  "C4'"  "H4'2"  SING  N  N  32  
BNG  "C5'"  "C6'"   SING  N  N  33  
BNG  "C5'"  "H5'1"  SING  N  N  34  
BNG  "C5'"  "H5'2"  SING  N  N  35  
BNG  "C6'"  "C7'"   SING  N  N  36  
BNG  "C6'"  "H6'1"  SING  N  N  37  
BNG  "C6'"  "H6'2"  SING  N  N  38  
BNG  "C7'"  "C8'"   SING  N  N  39  
BNG  "C7'"  "H7'1"  SING  N  N  40  
BNG  "C7'"  "H7'2"  SING  N  N  41  
BNG  "C8'"  "C9'"   SING  N  N  42  
BNG  "C8'"  "H8'1"  SING  N  N  43  
BNG  "C8'"  "H8'2"  SING  N  N  44  
BNG  "C9'"  "H9'1"  SING  N  N  45  
BNG  "C9'"  "H9'2"  SING  N  N  46  
BNG  "C9'"  "H9'3"  SING  N  N  47  
BNG  O2     HO2     SING  N  N  48  
BNG  O3     HO3     SING  N  N  49  
BNG  O4     HO4     SING  N  N  50  
BNG  O6     HO6     SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BNG  SMILES            ACDLabs               10.04  "O(CCCCCCCCC)C1OC(C(O)C(O)C1O)CO"  
BNG  SMILES_CANONICAL  CACTVS                3.341  "CCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
BNG  SMILES            CACTVS                3.341  "CCCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
BNG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
BNG  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCCCCCOC1C(C(C(C(O1)CO)O)O)O"  
BNG  InChI             InChI                 1.03   "InChI=1S/C15H30O6/c1-2-3-4-5-6-7-8-9-20-15-14(19)13(18)12(17)11(10-16)21-15/h11-19H,2-10H2,1H3/t11-,12-,13+,14-,15-/m1/s1"  
BNG  InChIKey          InChI                 1.03   QFAPUKLCALRPLH-UXXRCYHCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BNG  "SYSTEMATIC NAME"            ACDLabs               10.04  "nonyl beta-D-glucopyranoside"  
BNG  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-nonoxy-oxane-3,4,5-triol"  
BNG  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-nonylglucoside  
#
_pdbx_chem_comp_related.comp_id            BNG
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  BNG  C1   BGC  C1   "Carbohydrate core"  
 2  BNG  C2   BGC  C2   "Carbohydrate core"  
 3  BNG  C3   BGC  C3   "Carbohydrate core"  
 4  BNG  C4   BGC  C4   "Carbohydrate core"  
 5  BNG  C5   BGC  C5   "Carbohydrate core"  
 6  BNG  C6   BGC  C6   "Carbohydrate core"  
 7  BNG  O1   BGC  O1   "Carbohydrate core"  
 8  BNG  O2   BGC  O2   "Carbohydrate core"  
 9  BNG  O3   BGC  O3   "Carbohydrate core"  
10  BNG  O4   BGC  O4   "Carbohydrate core"  
11  BNG  O5   BGC  O5   "Carbohydrate core"  
12  BNG  O6   BGC  O6   "Carbohydrate core"  
13  BNG  H1   BGC  H1   "Carbohydrate core"  
14  BNG  H2   BGC  H2   "Carbohydrate core"  
15  BNG  H3   BGC  H3   "Carbohydrate core"  
16  BNG  H4   BGC  H4   "Carbohydrate core"  
17  BNG  H5   BGC  H5   "Carbohydrate core"  
18  BNG  H61  BGC  H61  "Carbohydrate core"  
19  BNG  H62  BGC  H62  "Carbohydrate core"  
20  BNG  HO2  BGC  HO2  "Carbohydrate core"  
21  BNG  HO3  BGC  HO3  "Carbohydrate core"  
22  BNG  HO4  BGC  HO4  "Carbohydrate core"  
23  BNG  HO6  BGC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
BNG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
BNG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
BNG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
BNG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BNG  "Create component"          1999-07-08  RCSB  
BNG  "Modify descriptor"         2011-06-04  RCSB  
BNG  "Other modification"        2020-07-03  RCSB  
BNG  "Modify parent residue"     2020-07-17  RCSB  
BNG  "Modify name"               2020-07-17  RCSB  
BNG  "Modify synonyms"           2020-07-17  RCSB  
BNG  "Modify linking type"       2020-07-17  RCSB  
BNG  "Modify leaving atom flag"  2020-07-17  RCSB  
##
