data_A7G
#

_chem_comp.id                                   A7G
_chem_comp.name                                 "1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H25 F2 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-07-08
_chem_comp.pdbx_modified_date                   2018-01-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       449.496
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A7G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A7G  F2   F1   F  0  1  N  N  N  ?  ?  ?   7.088  -1.925   0.453  F2   A7G   1  
A7G  C16  C1   C  0  1  N  N  N  ?  ?  ?   6.640  -0.634   0.149  C16  A7G   2  
A7G  F1   F2   F  0  1  N  N  N  ?  ?  ?   6.667  -0.445  -1.237  F1   A7G   3  
A7G  O    O1   O  0  1  N  N  N  ?  ?  ?   5.304  -0.469   0.626  O    A7G   4  
A7G  C15  C2   C  0  1  Y  N  N  ?  ?  ?   4.361  -1.309   0.125  C15  A7G   5  
A7G  C14  C3   C  0  1  Y  N  N  ?  ?  ?   4.715  -2.273  -0.807  C14  A7G   6  
A7G  C13  C4   C  0  1  Y  N  N  ?  ?  ?   3.754  -3.127  -1.316  C13  A7G   7  
A7G  C12  C5   C  0  1  Y  N  N  ?  ?  ?   2.442  -3.020  -0.896  C12  A7G   8  
A7G  C11  C6   C  0  1  Y  N  N  ?  ?  ?   2.086  -2.059   0.033  C11  A7G   9  
A7G  C10  C7   C  0  1  Y  N  N  ?  ?  ?   3.044  -1.208   0.549  C10  A7G  10  
A7G  C9   C8   C  0  1  N  N  N  ?  ?  ?   2.655  -0.162   1.561  C9   A7G  11  
A7G  N2   N1   N  0  1  Y  N  N  ?  ?  ?   2.398   1.108   0.877  N2   A7G  12  
A7G  C2   C9   C  0  1  Y  N  N  ?  ?  ?   3.311   2.082   0.613  C2   A7G  13  
A7G  C1   C10  C  0  1  N  N  N  ?  ?  ?   4.770   2.020   0.984  C1   A7G  14  
A7G  C8   C11  C  0  1  Y  N  N  ?  ?  ?   1.184   1.536   0.376  C8   A7G  15  
A7G  C3   C12  C  0  1  Y  N  N  ?  ?  ?   1.423   2.803  -0.187  C3   A7G  16  
A7G  N1   N2   N  0  1  Y  N  N  ?  ?  ?   2.741   3.073  -0.007  N1   A7G  17  
A7G  C7   C13  C  0  1  Y  N  N  ?  ?  ?  -0.089   0.991   0.338  C7   A7G  18  
A7G  C6   C14  C  0  1  Y  N  N  ?  ?  ?  -1.124   1.702  -0.259  C6   A7G  19  
A7G  C5   C15  C  0  1  Y  N  N  ?  ?  ?  -0.880   2.961  -0.818  C5   A7G  20  
A7G  C4   C16  C  0  1  Y  N  N  ?  ?  ?   0.370   3.504  -0.783  C4   A7G  21  
A7G  C17  C17  C  0  1  Y  N  N  ?  ?  ?  -2.489   1.125  -0.303  C17  A7G  22  
A7G  C21  C18  C  0  1  Y  N  N  ?  ?  ?  -2.745  -0.125   0.254  C21  A7G  23  
A7G  N3   N3   N  0  1  Y  N  N  ?  ?  ?  -3.957  -0.643   0.217  N3   A7G  24  
A7G  C20  C19  C  0  1  Y  N  N  ?  ?  ?  -4.971  -0.003  -0.346  C20  A7G  25  
A7G  C19  C20  C  0  1  Y  N  N  ?  ?  ?  -4.792   1.250  -0.924  C19  A7G  26  
A7G  C18  C21  C  0  1  Y  N  N  ?  ?  ?  -3.539   1.831  -0.901  C18  A7G  27  
A7G  N4   N4   N  0  1  N  N  N  ?  ?  ?  -6.230  -0.591  -0.360  N4   A7G  28  
A7G  C25  C22  C  0  1  N  N  N  ?  ?  ?  -6.204  -1.905   0.298  C25  A7G  29  
A7G  C24  C23  C  0  1  N  N  N  ?  ?  ?  -7.587  -2.552   0.191  C24  A7G  30  
A7G  N5   N5   N  0  1  N  N  N  ?  ?  ?  -8.586  -1.673   0.816  N5   A7G  31  
A7G  C23  C24  C  0  1  N  N  N  ?  ?  ?  -8.611  -0.359   0.159  C23  A7G  32  
A7G  C22  C25  C  0  1  N  N  N  ?  ?  ?  -7.228   0.288   0.264  C22  A7G  33  
A7G  H1   H1   H  0  1  N  N  N  ?  ?  ?   7.291   0.098   0.628  H1   A7G  34  
A7G  H2   H2   H  0  1  N  N  N  ?  ?  ?   5.740  -2.357  -1.136  H2   A7G  35  
A7G  H3   H3   H  0  1  N  N  N  ?  ?  ?   4.030  -3.877  -2.042  H3   A7G  36  
A7G  H4   H4   H  0  1  N  N  N  ?  ?  ?   1.692  -3.688  -1.294  H4   A7G  37  
A7G  H5   H5   H  0  1  N  N  N  ?  ?  ?   1.061  -1.981   0.363  H5   A7G  38  
A7G  H6   H6   H  0  1  N  N  N  ?  ?  ?   1.755  -0.481   2.087  H6   A7G  39  
A7G  H7   H7   H  0  1  N  N  N  ?  ?  ?   3.467  -0.030   2.278  H7   A7G  40  
A7G  H8   H8   H  0  1  N  N  N  ?  ?  ?   5.333   1.562   0.171  H8   A7G  41  
A7G  H9   H9   H  0  1  N  N  N  ?  ?  ?   5.143   3.029   1.161  H9   A7G  42  
A7G  H10  H10  H  0  1  N  N  N  ?  ?  ?   4.890   1.425   1.890  H10  A7G  43  
A7G  H11  H11  H  0  1  N  N  N  ?  ?  ?  -0.276   0.018   0.769  H11  A7G  44  
A7G  H12  H12  H  0  1  N  N  N  ?  ?  ?  -1.689   3.507  -1.280  H12  A7G  45  
A7G  H13  H13  H  0  1  N  N  N  ?  ?  ?   0.547   4.478  -1.217  H13  A7G  46  
A7G  H14  H14  H  0  1  N  N  N  ?  ?  ?  -1.943  -0.677   0.721  H14  A7G  47  
A7G  H15  H15  H  0  1  N  N  N  ?  ?  ?  -5.624   1.765  -1.382  H15  A7G  48  
A7G  H16  H16  H  0  1  N  N  N  ?  ?  ?  -3.372   2.805  -1.338  H16  A7G  49  
A7G  H17  H17  H  0  1  N  N  N  ?  ?  ?  -5.466  -2.542  -0.191  H17  A7G  50  
A7G  H18  H18  H  0  1  N  N  N  ?  ?  ?  -5.940  -1.781   1.348  H18  A7G  51  
A7G  H19  H19  H  0  1  N  N  N  ?  ?  ?  -7.839  -2.701  -0.858  H19  A7G  52  
A7G  H20  H20  H  0  1  N  N  N  ?  ?  ?  -7.579  -3.515   0.704  H20  A7G  53  
A7G  H21  H21  H  0  1  N  N  N  ?  ?  ?  -9.500  -2.101   0.806  H21  A7G  54  
A7G  H23  H23  H  0  1  N  N  N  ?  ?  ?  -8.875  -0.483  -0.892  H23  A7G  55  
A7G  H24  H24  H  0  1  N  N  N  ?  ?  ?  -9.349   0.277   0.646  H24  A7G  56  
A7G  H25  H25  H  0  1  N  N  N  ?  ?  ?  -6.976   0.437   1.314  H25  A7G  57  
A7G  H26  H26  H  0  1  N  N  N  ?  ?  ?  -7.237   1.250  -0.248  H26  A7G  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A7G  C1   C2   SING  N  N   1  
A7G  N1   C2   DOUB  Y  N   2  
A7G  N1   C3   SING  Y  N   3  
A7G  C2   N2   SING  Y  N   4  
A7G  C3   C4   DOUB  Y  N   5  
A7G  C3   C8   SING  Y  N   6  
A7G  N2   C9   SING  N  N   7  
A7G  N2   C8   SING  Y  N   8  
A7G  C4   C5   SING  Y  N   9  
A7G  C9   C10  SING  N  N  10  
A7G  C8   C7   DOUB  Y  N  11  
A7G  C11  C10  DOUB  Y  N  12  
A7G  C11  C12  SING  Y  N  13  
A7G  C5   C6   DOUB  Y  N  14  
A7G  C10  C15  SING  Y  N  15  
A7G  C7   C6   SING  Y  N  16  
A7G  C6   C17  SING  N  N  17  
A7G  C12  C13  DOUB  Y  N  18  
A7G  C15  O    SING  N  N  19  
A7G  C15  C14  DOUB  Y  N  20  
A7G  F1   C16  SING  N  N  21  
A7G  O    C16  SING  N  N  22  
A7G  C16  F2   SING  N  N  23  
A7G  C13  C14  SING  Y  N  24  
A7G  C17  C18  DOUB  Y  N  25  
A7G  C17  C21  SING  Y  N  26  
A7G  C18  C19  SING  Y  N  27  
A7G  C21  N3   DOUB  Y  N  28  
A7G  C19  C20  DOUB  Y  N  29  
A7G  N3   C20  SING  Y  N  30  
A7G  C20  N4   SING  N  N  31  
A7G  N4   C25  SING  N  N  32  
A7G  N4   C22  SING  N  N  33  
A7G  C25  C24  SING  N  N  34  
A7G  C22  C23  SING  N  N  35  
A7G  C24  N5   SING  N  N  36  
A7G  C23  N5   SING  N  N  37  
A7G  C16  H1   SING  N  N  38  
A7G  C14  H2   SING  N  N  39  
A7G  C13  H3   SING  N  N  40  
A7G  C12  H4   SING  N  N  41  
A7G  C11  H5   SING  N  N  42  
A7G  C9   H6   SING  N  N  43  
A7G  C9   H7   SING  N  N  44  
A7G  C1   H8   SING  N  N  45  
A7G  C1   H9   SING  N  N  46  
A7G  C1   H10  SING  N  N  47  
A7G  C7   H11  SING  N  N  48  
A7G  C5   H12  SING  N  N  49  
A7G  C4   H13  SING  N  N  50  
A7G  C21  H14  SING  N  N  51  
A7G  C19  H15  SING  N  N  52  
A7G  C18  H16  SING  N  N  53  
A7G  C25  H17  SING  N  N  54  
A7G  C25  H18  SING  N  N  55  
A7G  C24  H19  SING  N  N  56  
A7G  C24  H20  SING  N  N  57  
A7G  N5   H21  SING  N  N  58  
A7G  C23  H23  SING  N  N  59  
A7G  C23  H24  SING  N  N  60  
A7G  C22  H25  SING  N  N  61  
A7G  C22  H26  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A7G  SMILES            ACDLabs               12.01  "FC(F)Oc1ccccc1Cn5c4cc(c2ccc(nc2)N3CCNCC3)ccc4nc5C"  
A7G  InChI             InChI                 1.03   "InChI=1S/C25H25F2N5O/c1-17-30-21-8-6-18(19-7-9-24(29-15-19)31-12-10-28-11-13-31)14-22(21)32(17)16-20-4-2-3-5-23(20)33-25(26)27/h2-9,14-15,25,28H,10-13,16H2,1H3"  
A7G  InChIKey          InChI                 1.03   LRHACCJNWLLTDS-UHFFFAOYSA-N  
A7G  SMILES_CANONICAL  CACTVS                3.385  "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"  
A7G  SMILES            CACTVS                3.385  "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"  
A7G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"  
A7G  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1nc2ccc(cc2n1Cc3ccccc3OC(F)F)c4ccc(nc4)N5CCNCC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A7G  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-{[2-(difluoromethoxy)phenyl]methyl}-2-methyl-6-[6-(piperazin-1-yl)pyridin-3-yl]-1H-benzimidazole"  
A7G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "1-[[2-[bis(fluoranyl)methoxy]phenyl]methyl]-2-methyl-6-(6-piperazin-1-ylpyridin-3-yl)benzimidazole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A7G  "Create component"  2017-07-08  RCSB  
A7G  "Initial release"   2018-01-24  RCSB  
##
