data_A3G
# 
_chem_comp.id                                    A3G 
_chem_comp.name                                  "3'-deoxy-3'-(glycylamino)adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-18 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.308 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A3G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PD4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A3G C      C      C 0 1 N N N 10.361 3.035 -13.258 -4.119 1.002  -0.132 C      A3G 1  
A3G N      N      N 0 1 N N N 9.400  0.827 -12.781 -6.323 1.981  0.165  N      A3G 2  
A3G O      O      O 0 1 N N N 11.711 3.103 -13.106 -4.693 0.156  -0.784 O      A3G 3  
A3G N1     N1     N 0 1 Y N N 16.256 5.547 -16.351 4.942  1.679  0.292  N1     A3G 4  
A3G C2     C2     C 0 1 Y N N 15.584 4.411 -16.297 3.808  2.263  0.635  C2     A3G 5  
A3G N3     N3     N 0 1 Y N N 14.288 4.354 -16.551 2.655  1.629  0.623  N3     A3G 6  
A3G C4     C4     C 0 1 Y N N 13.606 5.463 -16.868 2.587  0.352  0.259  C4     A3G 7  
A3G C5     C5     C 0 1 Y N N 14.277 6.676 -16.929 3.766  -0.315 -0.115 C5     A3G 8  
A3G C6     C6     C 0 1 Y N N 15.641 6.695 -16.667 4.973  0.405  -0.086 C6     A3G 9  
A3G N6     N6     N 0 1 N N N 16.331 7.825 -16.789 6.166  -0.198 -0.444 N6     A3G 10 
A3G N7     N7     N 0 1 Y N N 13.391 7.610 -17.260 3.422  -1.585 -0.435 N7     A3G 11 
A3G C8     C8     C 0 1 Y N N 12.211 7.012 -17.408 2.138  -1.737 -0.285 C8     A3G 12 
A3G N8     N8     N 0 1 N N N 9.684  3.671 -14.211 -2.783 0.935  0.031  N8     A3G 13 
A3G N9     N9     N 0 1 Y N N 12.336 5.706 -17.180 1.578  -0.570 0.142  N9     A3G 14 
A3G CA     CA     C 0 1 N N N 9.572  2.190 -12.256 -4.899 2.131  0.492  CA     A3G 15 
A3G "C1'"  "C1'"  C 0 1 N N R 11.255 4.710 -17.369 0.159  -0.342 0.424  "C1'"  A3G 16 
A3G "C2'"  "C2'"  C 0 1 N N R 11.155 3.700 -16.224 -0.553 0.265  -0.812 "C2'"  A3G 17 
A3G "O2'"  "O2'"  O 0 1 N N N 10.386 2.575 -16.657 -0.429 1.689  -0.824 "O2'"  A3G 18 
A3G "C3'"  "C3'"  C 0 1 N N S 10.328 4.511 -15.232 -2.024 -0.159 -0.580 "C3'"  A3G 19 
A3G "C4'"  "C4'"  C 0 1 N N S 9.280  5.098 -16.177 -1.924 -1.353 0.389  "C4'"  A3G 20 
A3G "O4'"  "O4'"  O 0 1 N N N 10.009 5.430 -17.373 -0.527 -1.596 0.626  "O4'"  A3G 21 
A3G "C5'"  "C5'"  C 0 1 N N N 8.709  6.374 -15.557 -2.568 -2.590 -0.242 "C5'"  A3G 22 
A3G "O5'"  "O5'"  O 0 1 N N N 9.776  7.296 -15.318 -2.575 -3.659 0.706  "O5'"  A3G 23 
A3G HN     HN     H 0 1 N N N 8.884  0.279 -12.123 -6.668 1.079  0.458  HN     A3G 24 
A3G HNA    HNA    H 0 1 N N N 8.902  0.864 -13.647 -6.867 2.727  0.572  HNA    A3G 25 
A3G H2     H2     H 0 1 N N N 16.108 3.503 -16.038 3.828  3.300  0.936  H2     A3G 26 
A3G HN6    HN6    H 0 1 N N N 17.299 7.646 -16.612 6.992  0.309  -0.421 HN6    A3G 27 
A3G HN6A   HN6A   H 0 0 N N N 16.222 8.183 -17.716 6.175  -1.129 -0.718 HN6A   A3G 28 
A3G H8     H8     H 0 1 N N N 11.291 7.511 -17.673 1.597  -2.652 -0.471 H8     A3G 29 
A3G HN8    HN8    H 0 1 N N N 8.689  3.573 -14.234 -2.323 1.612  0.553  HN8    A3G 30 
A3G HA     HA     H 0 1 N N N 10.120 2.147 -11.303 -4.770 2.107  1.574  HA     A3G 31 
A3G HAA    HAA    H 0 1 N N N 8.584  2.645 -12.093 -4.534 3.082  0.104  HAA    A3G 32 
A3G "H1'"  "H1'"  H 0 1 N N N 11.470 4.164 -18.299 0.040  0.307  1.292  "H1'"  A3G 33 
A3G "H2'"  "H2'"  H 0 1 N N N 12.114 3.317 -15.845 -0.165 -0.165 -1.735 "H2'"  A3G 34 
A3G "HO2'" "HO2'" H 0 0 N N N 10.321 1.944 -15.950 0.484  2.003  -0.877 "HO2'" A3G 35 
A3G "H3'"  "H3'"  H 0 1 N N N 10.915 5.237 -14.651 -2.486 -0.464 -1.519 "H3'"  A3G 36 
A3G "H4'"  "H4'"  H 0 1 N N N 8.448  4.406 -16.373 -2.423 -1.112 1.327  "H4'"  A3G 37 
A3G "H5'"  "H5'"  H 0 1 N N N 7.979  6.825 -16.246 -3.592 -2.357 -0.535 "H5'"  A3G 38 
A3G "H5'A" "H5'A" H 0 0 N N N 8.211  6.132 -14.607 -1.997 -2.888 -1.122 "H5'A" A3G 39 
A3G "HO5'" "HO5'" H 0 0 N N N 9.428  8.091 -14.933 -2.970 -4.477 0.373  "HO5'" A3G 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A3G C     O      DOUB N N 1  
A3G C     N8     SING N N 2  
A3G C     CA     SING N N 3  
A3G N     CA     SING N N 4  
A3G N1    C2     DOUB Y N 5  
A3G N1    C6     SING Y N 6  
A3G C2    N3     SING Y N 7  
A3G N3    C4     DOUB Y N 8  
A3G C4    C5     SING Y N 9  
A3G C4    N9     SING Y N 10 
A3G C5    C6     DOUB Y N 11 
A3G C5    N7     SING Y N 12 
A3G C6    N6     SING N N 13 
A3G N7    C8     DOUB Y N 14 
A3G C8    N9     SING Y N 15 
A3G N8    "C3'"  SING N N 16 
A3G N9    "C1'"  SING N N 17 
A3G "C1'" "C2'"  SING N N 18 
A3G "C1'" "O4'"  SING N N 19 
A3G "C2'" "O2'"  SING N N 20 
A3G "C2'" "C3'"  SING N N 21 
A3G "C3'" "C4'"  SING N N 22 
A3G "C4'" "O4'"  SING N N 23 
A3G "C4'" "C5'"  SING N N 24 
A3G "C5'" "O5'"  SING N N 25 
A3G N     HN     SING N N 26 
A3G N     HNA    SING N N 27 
A3G C2    H2     SING N N 28 
A3G N6    HN6    SING N N 29 
A3G N6    HN6A   SING N N 30 
A3G C8    H8     SING N N 31 
A3G N8    HN8    SING N N 32 
A3G CA    HA     SING N N 33 
A3G CA    HAA    SING N N 34 
A3G "C1'" "H1'"  SING N N 35 
A3G "C2'" "H2'"  SING N N 36 
A3G "O2'" "HO2'" SING N N 37 
A3G "C3'" "H3'"  SING N N 38 
A3G "C4'" "H4'"  SING N N 39 
A3G "C5'" "H5'"  SING N N 40 
A3G "C5'" "H5'A" SING N N 41 
A3G "O5'" "HO5'" SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A3G SMILES           ACDLabs              12.01 "O=C(NC3C(OC(n2cnc1c(ncnc12)N)C3O)CO)CN"                                                                                                                         
A3G SMILES_CANONICAL CACTVS               3.370 "NCC(=O)N[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO)n2cnc3c(N)ncnc23"                                                                                                      
A3G SMILES           CACTVS               3.370 "NCC(=O)N[CH]1[CH](O)[CH](O[CH]1CO)n2cnc3c(N)ncnc23"                                                                                                             
A3G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)NC(=O)CN)O)N"                                                                                                 
A3G SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)NC(=O)CN)O)N"                                                                                                                   
A3G InChI            InChI                1.03  "InChI=1S/C12H17N7O4/c13-1-6(21)18-7-5(2-20)23-12(9(7)22)19-4-17-8-10(14)15-3-16-11(8)19/h3-5,7,9,12,20,22H,1-2,13H2,(H,18,21)(H2,14,15,16)/t5-,7-,9-,12-/m1/s1" 
A3G InChIKey         InChI                1.03  XJJYXFHVLHMVGL-MUIQIWNUSA-N                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A3G "SYSTEMATIC NAME" ACDLabs              12.01 "3'-deoxy-3'-(glycylamino)adenosine"                                                                 
A3G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl]-2-azanyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A3G "Create component"     2010-11-18 PDBJ 
A3G "Modify aromatic_flag" 2011-06-04 RCSB 
A3G "Modify descriptor"    2011-06-04 RCSB 
# 
