data_A1AMG
# 
_chem_comp.id                                    A1AMG 
_chem_comp.name                                  "N-cyclopropyl-4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H27 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-11 
_chem_comp.pdbx_modified_date                    2024-05-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        453.557 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AMG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H0F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AMG N1  N1  N 0 1 Y N N N N N 8.805  -7.085  19.083 -2.033 -2.980 0.116  N1  A1AMG 1  
A1AMG N3  N2  N 0 1 Y N N N N N 4.875  -7.874  19.637 -5.425 -1.150 1.385  N3  A1AMG 2  
A1AMG C4  C1  C 0 1 Y N N N N N 8.297  -8.291  18.750 -2.147 -1.654 0.110  C4  A1AMG 3  
A1AMG C5  C2  C 0 1 Y N N N N N 7.978  -6.189  19.622 -3.023 -3.745 0.537  C5  A1AMG 4  
A1AMG C6  C3  C 0 1 Y N N N N N 6.181  -7.490  19.500 -4.373 -1.939 1.000  C6  A1AMG 5  
A1AMG C7  C4  C 0 1 Y N N N N N 4.743  -9.157  19.165 -5.123 0.163  1.215  C7  A1AMG 6  
A1AMG C8  C5  C 0 1 Y N N N N N 5.964  -9.632  18.732 -3.861 0.282  0.712  C8  A1AMG 7  
A1AMG C10 C6  C 0 1 N N N N N N 5.379  -13.269 17.921 -3.135 3.819  -0.447 C10 A1AMG 8  
A1AMG C13 C7  C 0 1 Y N N N N N 6.911  -8.550  18.935 -3.346 -1.088 0.562  C13 A1AMG 9  
A1AMG C15 C8  C 0 1 Y N N N N N 11.359 -7.729  15.872 1.063  0.875  -0.927 C15 A1AMG 10 
A1AMG C17 C9  C 0 1 Y N N N N N 11.038 -8.482  13.587 3.316  1.435  -0.273 C17 A1AMG 11 
A1AMG C20 C10 C 0 1 N N N N N N 10.416 -10.530 11.533 6.185  0.963  0.454  C20 A1AMG 12 
A1AMG C21 C11 C 0 1 N N N N N N 10.313 -9.041  11.229 5.440  2.252  0.833  C21 A1AMG 13 
A1AMG C22 C12 C 0 1 N N N N N N 11.264 -8.251  12.112 4.352  2.517  -0.193 C22 A1AMG 14 
A1AMG O2  O1  O 0 1 N N N N N N 8.324  -10.690 13.075 5.402  -1.551 -0.006 O2  A1AMG 15 
A1AMG S   S1  S 0 1 N N N N N N 9.760  -10.877 13.126 5.053  -0.421 0.783  S   A1AMG 16 
A1AMG O1  O2  O 0 1 N N N N N N 10.246 -12.154 13.586 4.806  -0.546 2.176  O1  A1AMG 17 
A1AMG C16 C13 C 0 1 Y N N N N N 11.483 -7.540  14.504 2.073  1.801  -0.788 C16 A1AMG 18 
A1AMG C18 C14 C 0 1 Y N N N N N 10.426 -9.631  14.115 3.517  0.128  0.108  C18 A1AMG 19 
A1AMG C19 C15 C 0 1 Y N N N N N 10.304 -9.829  15.488 2.497  -0.803 -0.026 C19 A1AMG 20 
A1AMG C14 C16 C 0 1 Y N N N N N 10.771 -8.872  16.385 1.273  -0.437 -0.547 C14 A1AMG 21 
A1AMG C3  C17 C 0 1 N N S N N N 10.545 -9.040  17.883 0.175  -1.458 -0.699 C3  A1AMG 22 
A1AMG C1  C18 C 0 1 N N N N N N 11.429 -10.157 18.502 0.118  -1.932 -2.153 C1  A1AMG 23 
A1AMG C2  C19 C 0 1 N N N N N N 11.308 -10.192 20.047 1.458  -2.562 -2.537 C2  A1AMG 24 
A1AMG C   C20 C 0 1 N N N N N N 12.887 -10.000 18.108 -0.997 -2.968 -2.307 C   A1AMG 25 
A1AMG N   N3  N 0 1 N N N N N N 9.136  -9.238  18.224 -1.108 -0.854 -0.331 N   A1AMG 26 
A1AMG N2  N4  N 0 1 Y N N N N N 6.676  -6.304  19.872 -4.165 -3.255 0.969  N2  A1AMG 27 
A1AMG C9  C21 C 0 1 N N N N N N 6.243  -10.978 18.195 -3.156 1.529  0.385  C9  A1AMG 28 
A1AMG O   O3  O 0 1 N N N N N N 7.294  -11.227 17.598 -1.957 1.617  0.572  O   A1AMG 29 
A1AMG N4  N5  N 0 1 N N N N N N 5.281  -11.897 18.413 -3.838 2.576  -0.122 N4  A1AMG 30 
A1AMG C12 C22 C 0 1 N N N N N N 4.700  -14.331 18.699 -3.800 5.135  -0.038 C12 A1AMG 31 
A1AMG C11 C23 C 0 1 N N N N N N 6.183  -14.248 18.691 -3.758 4.725  -1.512 C11 A1AMG 32 
A1AMG H1  H1  H 0 1 N N N N N N 4.139  -7.314  20.017 -6.268 -1.482 1.731  H1  A1AMG 33 
A1AMG H10 H2  H 0 1 N N N N N N 8.424  -5.243  19.892 -2.891 -4.817 0.526  H10 A1AMG 34 
A1AMG H11 H3  H 0 1 N N N N N N 3.818  -9.713  19.137 -5.782 0.988  1.443  H11 A1AMG 35 
A1AMG H13 H4  H 0 1 N N N N N N 5.380  -13.398 16.829 -2.047 3.770  -0.403 H13 A1AMG 36 
A1AMG H18 H5  H 0 1 N N N N N N 11.727 -6.972  16.548 0.106  1.175  -1.327 H18 A1AMG 37 
A1AMG H21 H6  H 0 1 N N N N N N 11.473 -10.834 11.502 6.450  0.984  -0.603 H21 A1AMG 38 
A1AMG H22 H7  H 0 1 N N N N N N 9.850  -11.094 10.777 7.085  0.860  1.060  H22 A1AMG 39 
A1AMG H23 H8  H 0 1 N N N N N N 10.571 -8.868  10.174 4.990  2.136  1.819  H23 A1AMG 40 
A1AMG H24 H9  H 0 1 N N N N N N 9.282  -8.704  11.415 6.140  3.087  0.847  H24 A1AMG 41 
A1AMG H25 H10 H 0 1 N N N N N N 12.295 -8.545  11.866 4.818  2.625  -1.173 H25 A1AMG 42 
A1AMG H26 H11 H 0 1 N N N N N N 11.128 -7.180  11.901 3.857  3.454  0.058  H26 A1AMG 43 
A1AMG H19 H12 H 0 1 N N N N N N 11.940 -6.631  14.141 1.900  2.825  -1.083 H19 A1AMG 44 
A1AMG H20 H13 H 0 1 N N N N N N 9.843  -10.732 15.860 2.668  -1.828 0.269  H20 A1AMG 45 
A1AMG H   H14 H 0 1 N N N N N N 10.865 -8.099  18.355 0.377  -2.309 -0.047 H   A1AMG 46 
A1AMG H5  H15 H 0 1 N N N N N N 11.071 -11.122 18.115 -0.084 -1.082 -2.804 H5  A1AMG 47 
A1AMG H7  H16 H 0 1 N N N N N N 10.251 -10.306 20.330 1.659  -3.413 -1.886 H7  A1AMG 48 
A1AMG H8  H17 H 0 1 N N N N N N 11.886 -11.041 20.441 1.416  -2.900 -3.573 H8  A1AMG 49 
A1AMG H6  H18 H 0 1 N N N N N N 11.701 -9.254  20.467 2.252  -1.824 -2.427 H6  A1AMG 50 
A1AMG H3  H19 H 0 1 N N N N N N 12.970 -9.975  17.011 -1.952 -2.519 -2.033 H3  A1AMG 51 
A1AMG H2  H20 H 0 1 N N N N N N 13.281 -9.062  18.527 -1.038 -3.306 -3.343 H2  A1AMG 52 
A1AMG H4  H21 H 0 1 N N N N N N 13.466 -10.849 18.501 -0.795 -3.819 -1.656 H4  A1AMG 53 
A1AMG H9  H22 H 0 1 N N N N N N 8.699  -9.534  17.374 -1.228 0.106  -0.396 H9  A1AMG 54 
A1AMG H12 H23 H 0 1 N N N N N N 4.469  -11.629 18.932 -4.793 2.505  -0.270 H12 A1AMG 55 
A1AMG H17 H24 H 0 1 N N N N N N 4.192  -15.156 18.177 -4.760 5.075  0.474  H17 A1AMG 56 
A1AMG H16 H25 H 0 1 N N N N N N 4.139  -14.073 19.610 -3.149 5.951  0.276  H16 A1AMG 57 
A1AMG H15 H26 H 0 1 N N N N N N 6.774  -15.011 18.163 -3.080 5.271  -2.167 H15 A1AMG 58 
A1AMG H14 H27 H 0 1 N N N N N N 6.721  -13.928 19.595 -4.691 4.395  -1.969 H14 A1AMG 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AMG C   C1  SING N N 1  
A1AMG C2  C1  SING N N 2  
A1AMG C1  C3  SING N N 3  
A1AMG N   C3  SING N N 4  
A1AMG C4  N   SING N N 5  
A1AMG C4  N1  DOUB Y N 6  
A1AMG N1  C5  SING Y N 7  
A1AMG C5  N2  DOUB Y N 8  
A1AMG N2  C6  SING Y N 9  
A1AMG C6  N3  SING Y N 10 
A1AMG N3  C7  SING Y N 11 
A1AMG C7  C8  DOUB Y N 12 
A1AMG C9  C8  SING N N 13 
A1AMG O   C9  DOUB N N 14 
A1AMG N4  C9  SING N N 15 
A1AMG C10 N4  SING N N 16 
A1AMG C10 C11 SING N N 17 
A1AMG C11 C12 SING N N 18 
A1AMG C12 C10 SING N N 19 
A1AMG C8  C13 SING Y N 20 
A1AMG C13 C4  SING Y N 21 
A1AMG C6  C13 DOUB Y N 22 
A1AMG C3  C14 SING N N 23 
A1AMG C14 C15 DOUB Y N 24 
A1AMG C15 C16 SING Y N 25 
A1AMG C16 C17 DOUB Y N 26 
A1AMG C17 C18 SING Y N 27 
A1AMG C19 C18 DOUB Y N 28 
A1AMG C14 C19 SING Y N 29 
A1AMG C18 S   SING N N 30 
A1AMG O1  S   DOUB N N 31 
A1AMG S   O2  DOUB N N 32 
A1AMG C20 S   SING N N 33 
A1AMG C21 C20 SING N N 34 
A1AMG C22 C21 SING N N 35 
A1AMG C17 C22 SING N N 36 
A1AMG N3  H1  SING N N 37 
A1AMG C5  H10 SING N N 38 
A1AMG C7  H11 SING N N 39 
A1AMG C10 H13 SING N N 40 
A1AMG C15 H18 SING N N 41 
A1AMG C20 H21 SING N N 42 
A1AMG C20 H22 SING N N 43 
A1AMG C21 H23 SING N N 44 
A1AMG C21 H24 SING N N 45 
A1AMG C22 H25 SING N N 46 
A1AMG C22 H26 SING N N 47 
A1AMG C16 H19 SING N N 48 
A1AMG C19 H20 SING N N 49 
A1AMG C3  H   SING N N 50 
A1AMG C1  H5  SING N N 51 
A1AMG C2  H7  SING N N 52 
A1AMG C2  H8  SING N N 53 
A1AMG C2  H6  SING N N 54 
A1AMG C   H3  SING N N 55 
A1AMG C   H2  SING N N 56 
A1AMG C   H4  SING N N 57 
A1AMG N   H9  SING N N 58 
A1AMG N4  H12 SING N N 59 
A1AMG C12 H17 SING N N 60 
A1AMG C12 H16 SING N N 61 
A1AMG C11 H15 SING N N 62 
A1AMG C11 H14 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AMG SMILES           ACDLabs              12.01 "CC(C)C(Nc1ncnc2[NH]cc(C(=O)NC3CC3)c21)c1ccc2CCCS(=O)(=O)c2c1"                                                                                                                                       
A1AMG InChI            InChI                1.06  "InChI=1S/C23H27N5O3S/c1-13(2)20(15-6-5-14-4-3-9-32(30,31)18(14)10-15)28-22-19-17(23(29)27-16-7-8-16)11-24-21(19)25-12-26-22/h5-6,10-13,16,20H,3-4,7-9H2,1-2H3,(H,27,29)(H2,24,25,26,28)/t20-/m0/s1" 
A1AMG InChIKey         InChI                1.06  FGTMEWMCYMGHFR-FQEVSTJZSA-N                                                                                                                                                                          
A1AMG SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](Nc1ncnc2[nH]cc(C(=O)NC3CC3)c12)c4ccc5CCC[S](=O)(=O)c5c4"                                                                                                                                 
A1AMG SMILES           CACTVS               3.385 "CC(C)[CH](Nc1ncnc2[nH]cc(C(=O)NC3CC3)c12)c4ccc5CCC[S](=O)(=O)c5c4"                                                                                                                                  
A1AMG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC5CC5"                                                                                                                                
A1AMG SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCC2)Nc3c4c(c[nH]c4ncn3)C(=O)NC5CC5"                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AMG "SYSTEMATIC NAME" ACDLabs              12.01 "N-cyclopropyl-4-{[(1R)-1-(1,1-dioxo-1,2,3,4-tetrahydro-1lambda~6~-benzothiopyran-7-yl)-2-methylpropyl]amino}-7H-pyrrolo[2,3-d]pyrimidine-5-carboxamide"         
A1AMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[(1~{S})-1-[1,1-bis(oxidanylidene)-3,4-dihydro-2~{H}-thiochromen-7-yl]-2-methyl-propyl]amino]-~{N}-cyclopropyl-7~{H}-pyrrolo[2,3-d]pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AMG "Create component" 2024-04-11 RCSB 
A1AMG "Initial release"  2024-05-15 RCSB 
# 
