data_84G
#

_chem_comp.id                                   84G
_chem_comp.name                                 Arbekacin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H44 N6 O10"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2S)-4-amino-N-{(1R,2S,3S,4R,5S)-5-amino-2-[(3-amino-3-deoxy-alpha-D-glucopyranosyl)oxy]-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-12-23
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       552.619
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    84G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5U8B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
84G  C1   C1   C  0  1  N  N  N  36.402   -3.228  18.417  -4.536   3.418  -0.705  C1   84G   1  
84G  C2   C2   C  0  1  N  N  S  37.617   -3.352  17.508  -4.646   2.494   0.510  C2   84G   2  
84G  C3   C3   C  0  1  N  N  N  37.410   -4.535  16.494  -3.267   2.192   1.037  C3   84G   3  
84G  C4   C4   C  0  1  N  N  R  37.485   -5.349  14.195  -1.055   1.199   0.795  C4   84G   4  
84G  C5   C5   C  0  1  N  N  N  36.008   -5.718  14.072  -0.128   2.383   0.510  C5   84G   5  
84G  O1   O1   O  0  1  N  N  N  37.075   -5.638  16.916  -2.942   2.576   2.141  O1   84G   6  
84G  O2   O2   O  0  1  N  N  N  36.313   -9.325  13.159   3.125   0.536   0.856  O2   84G   7  
84G  O3   O3   O  0  1  N  N  N  36.373  -10.902  14.903   4.451   0.889  -1.031  O3   84G   8  
84G  O4   O4   O  0  1  N  N  N  38.885   -8.894  14.282   1.400  -1.531  -0.001  O4   84G   9  
84G  O5   O5   O  0  1  N  N  N  39.725   -6.183  14.085  -1.375  -1.159   0.374  O5   84G  10  
84G  O    O6   O  0  1  N  N  N  37.833   -2.103  16.874  -5.415   3.137   1.529  O    84G  11  
84G  C    C6   C  0  1  N  N  N  36.617   -3.825  19.796  -5.924   3.625  -1.315  C    84G  12  
84G  N    N1   N  0  1  N  N  N  36.211   -2.876  20.875  -5.818   4.511  -2.482  N    84G  13  
84G  N1   N2   N  0  1  N  N  N  37.614   -4.290  15.192  -2.395   1.493   0.283  N1   84G  14  
84G  C15  C7   C  0  1  N  N  S  38.412   -6.528  14.565  -0.509  -0.053   0.107  C15  84G  15  
84G  C16  C8   C  0  1  N  N  S  40.411   -5.161  14.762  -1.980  -1.718  -0.794  C16  84G  16  
84G  C21  C9   C  0  1  N  N  R  41.857   -5.083  14.278  -3.173  -2.586  -0.384  C21  84G  17  
84G  O9   O7   O  0  1  N  N  N  41.917   -4.739  12.900  -4.103  -1.799   0.362  O9   84G  18  
84G  C20  C10  C  0  1  N  N  S  42.568   -6.408  14.550  -2.675  -3.747   0.483  C20  84G  19  
84G  N5   N3   N  0  1  N  N  N  43.973   -6.361  14.131  -3.802  -4.628   0.818  N5   84G  20  
84G  C19  C11  C  0  1  N  N  S  42.477   -6.688  16.046  -1.621  -4.538  -0.299  C19  84G  21  
84G  O8   O8   O  0  1  N  N  N  43.026   -7.965  16.323  -1.097  -5.580   0.527  O8   84G  22  
84G  C17  C12  C  0  1  N  N  R  41.012   -6.712  16.469  -0.489  -3.594  -0.712  C17  84G  23  
84G  C18  C13  C  0  1  N  N  N  40.841   -6.899  17.963   0.539  -4.364  -1.544  C18  84G  24  
84G  O7   O9   O  0  1  N  N  N  40.621   -5.649  18.616   1.701  -3.554  -1.734  O7   84G  25  
84G  O6   O10  O  0  1  N  N  N  40.382   -5.460  16.137  -1.024  -2.521  -1.489  O6   84G  26  
84G  C14  C14  C  0  1  N  N  S  38.094   -7.812  13.802   0.891  -0.361   0.642  C14  84G  27  
84G  C7   C15  C  0  1  N  N  R  36.608   -8.123  13.897   1.817   0.823   0.356  C7   84G  28  
84G  C6   C16  C  0  1  N  N  S  35.802   -6.990  13.260   1.272   2.075   1.045  C6   84G  29  
84G  N2   N4   N  0  1  N  N  N  34.368   -7.286  13.149   2.161   3.212   0.770  N2   84G  30  
84G  C8   C17  C  0  1  N  N  R  36.832  -10.558  13.614   3.987  -0.088  -0.097  C8   84G  31  
84G  C13  C18  C  0  1  N  N  R  36.386  -11.596  12.585   5.185  -0.708   0.627  C13  84G  32  
84G  N4   N5   N  0  1  N  N  N  36.521  -11.019  11.243   4.708  -1.670   1.630  N4   84G  33  
84G  C12  C19  C  0  1  N  N  N  34.978  -12.154  12.751   5.983   0.400   1.320  C12  84G  34  
84G  C11  C20  C  0  1  N  N  N  34.570  -12.341  14.200   6.408   1.437   0.276  C11  84G  35  
84G  C9   C21  C  0  1  N  N  S  34.958  -11.126  15.000   5.163   1.975  -0.434  C9   84G  36  
84G  C10  C22  C  0  1  N  N  N  34.729  -11.296  16.486   5.584   2.967  -1.520  C10  84G  37  
84G  N3   N6   N  0  1  N  N  N  34.972  -10.064  17.213   4.388   3.571  -2.122  N3   84G  38  
84G  H1   H1   H  0  1  N  N  N  36.161   -2.161  18.533  -4.128   4.380  -0.394  H1   84G  39  
84G  H2   H2   H  0  1  N  N  N  35.556   -3.746  17.941  -3.877   2.966  -1.446  H2   84G  40  
84G  H3   H3   H  0  1  N  N  N  38.487   -3.601  18.133  -5.135   1.565   0.218  H3   84G  41  
84G  H4   H4   H  0  1  N  N  N  37.816   -4.958  13.222  -1.106   1.030   1.871  H4   84G  42  
84G  H5   H5   H  0  1  N  N  N  35.476   -4.892  13.578  -0.077   2.553  -0.566  H5   84G  43  
84G  H6   H6   H  0  1  N  N  N  35.595   -5.870  15.080  -0.517   3.275   1.000  H6   84G  44  
84G  H7   H7   H  0  1  N  N  N  39.805   -8.670  14.210   2.247  -1.837   0.353  H7   84G  45  
84G  H8   H8   H  0  1  N  N  N  37.951   -1.429  17.533  -5.038   3.972   1.838  H8   84G  46  
84G  H9   H9   H  0  1  N  N  N  36.018   -4.744  19.885  -6.331   2.663  -1.625  H9   84G  47  
84G  H10  H10  H  0  1  N  N  N  37.683   -4.069  19.917  -6.583   4.077  -0.574  H10  84G  48  
84G  H11  H11  H  0  1  N  N  N  36.365   -3.300  21.768  -5.162   4.146  -3.155  H11  84G  49  
84G  H12  H12  H  0  1  N  N  N  36.754   -2.039  20.805  -6.722   4.664  -2.903  H12  84G  50  
84G  H14  H14  H  0  1  N  N  N  37.859   -3.366  14.898  -2.656   1.186  -0.600  H14  84G  51  
84G  H15  H15  H  0  1  N  N  N  38.400   -6.704  15.651  -0.458   0.116  -0.969  H15  84G  52  
84G  H16  H16  H  0  1  N  N  N  39.927   -4.191  14.575  -2.323  -0.914  -1.446  H16  84G  53  
84G  H17  H17  H  0  1  N  N  N  42.365   -4.304  14.865  -3.660  -2.980  -1.276  H17  84G  54  
84G  H18  H18  H  0  1  N  N  N  41.469   -3.913  12.759  -4.460  -1.044  -0.127  H18  84G  55  
84G  H19  H19  H  0  1  N  N  N  42.046   -7.209  14.006  -2.232  -3.355   1.398  H19  84G  56  
84G  H20  H20  H  0  1  N  N  N  44.408   -7.241  14.322  -4.514  -4.127   1.328  H20  84G  57  
84G  H21  H21  H  0  1  N  N  N  44.022   -6.171  13.150  -4.185  -5.057  -0.011  H21  84G  58  
84G  H23  H23  H  0  1  N  N  N  43.007   -5.900  16.601  -2.077  -4.972  -1.188  H23  84G  59  
84G  H24  H24  H  0  1  N  N  N  42.969   -8.139  17.255  -0.423  -6.122   0.095  H24  84G  60  
84G  H25  H25  H  0  1  N  N  N  40.506   -7.537  15.946  -0.007  -3.192   0.180  H25  84G  61  
84G  H26  H26  H  0  1  N  N  N  39.978   -7.557  18.146   0.816  -5.280  -1.023  H26  84G  62  
84G  H27  H27  H  0  1  N  N  N  41.750   -7.363  18.373   0.107  -4.613  -2.514  H27  84G  63  
84G  H28  H28  H  0  1  N  N  N  40.517   -5.793  19.549   2.396  -3.979  -2.255  H28  84G  64  
84G  H29  H29  H  0  1  N  N  N  38.332   -7.638  12.742   0.839  -0.530   1.717  H29  84G  65  
84G  H30  H30  H  0  1  N  N  N  36.319   -8.232  14.953   1.869   0.993  -0.719  H30  84G  66  
84G  H31  H31  H  0  1  N  N  N  36.204   -6.816  12.251   1.220   1.906   2.120  H31  84G  67  
84G  H32  H32  H  0  1  N  N  N  33.899   -6.510  12.727   1.735   4.081   1.055  H32  84G  68  
84G  H33  H33  H  0  1  N  N  N  34.239   -8.101  12.584   3.057   3.085   1.216  H33  84G  69  
84G  H35  H35  H  0  1  N  N  N  37.931  -10.521  13.609   3.440  -0.867  -0.628  H35  84G  70  
84G  H36  H36  H  0  1  N  N  N  37.082  -12.445  12.659   5.823  -1.219  -0.094  H36  84G  71  
84G  H37  H37  H  0  1  N  N  N  37.444  -10.651  11.129   5.481  -2.089   2.125  H37  84G  72  
84G  H38  H38  H  0  1  N  N  N  36.358  -11.728  10.557   4.062  -1.234   2.270  H38  84G  73  
84G  H40  H40  H  0  1  N  N  N  34.270  -11.459  12.276   5.361   0.879   2.077  H40  84G  74  
84G  H41  H41  H  0  1  N  N  N  34.928  -13.130  12.246   6.868  -0.027   1.791  H41  84G  75  
84G  H42  H42  H  0  1  N  N  N  33.481  -12.483  14.257   6.929   2.258   0.770  H42  84G  76  
84G  H43  H43  H  0  1  N  N  N  35.078  -13.226  14.611   7.071   0.970  -0.452  H43  84G  77  
84G  H44  H44  H  0  1  N  N  N  34.400  -10.250  14.638   4.521   2.477   0.288  H44  84G  78  
84G  H45  H45  H  0  1  N  N  N  33.687  -11.608  16.652   6.203   3.748  -1.079  H45  84G  79  
84G  H46  H46  H  0  1  N  N  N  35.409  -12.073  16.865   6.154   2.444  -2.289  H46  84G  80  
84G  H47  H47  H  0  1  N  N  N  34.811  -10.215  18.188   3.810   4.007  -1.419  H47  84G  81  
84G  H48  H48  H  0  1  N  N  N  35.919   -9.775  17.072   4.640   4.231  -2.843  H48  84G  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
84G  N4   C13  SING  N  N   1  
84G  C13  C12  SING  N  N   2  
84G  C13  C8   SING  N  N   3  
84G  C12  C11  SING  N  N   4  
84G  O9   C21  SING  N  N   5  
84G  N2   C6   SING  N  N   6  
84G  O2   C8   SING  N  N   7  
84G  O2   C7   SING  N  N   8  
84G  C6   C7   SING  N  N   9  
84G  C6   C5   SING  N  N  10  
84G  C8   O3   SING  N  N  11  
84G  C14  C7   SING  N  N  12  
84G  C14  O4   SING  N  N  13  
84G  C14  C15  SING  N  N  14  
84G  C5   C4   SING  N  N  15  
84G  O5   C15  SING  N  N  16  
84G  O5   C16  SING  N  N  17  
84G  N5   C20  SING  N  N  18  
84G  C4   C15  SING  N  N  19  
84G  C4   N1   SING  N  N  20  
84G  C11  C9   SING  N  N  21  
84G  C21  C20  SING  N  N  22  
84G  C21  C16  SING  N  N  23  
84G  C20  C19  SING  N  N  24  
84G  C16  O6   SING  N  N  25  
84G  O3   C9   SING  N  N  26  
84G  C9   C10  SING  N  N  27  
84G  N1   C3   SING  N  N  28  
84G  C19  O8   SING  N  N  29  
84G  C19  C17  SING  N  N  30  
84G  O6   C17  SING  N  N  31  
84G  C17  C18  SING  N  N  32  
84G  C10  N3   SING  N  N  33  
84G  C3   O1   DOUB  N  N  34  
84G  C3   C2   SING  N  N  35  
84G  O    C2   SING  N  N  36  
84G  C2   C1   SING  N  N  37  
84G  C18  O7   SING  N  N  38  
84G  C1   C    SING  N  N  39  
84G  C    N    SING  N  N  40  
84G  C1   H1   SING  N  N  41  
84G  C1   H2   SING  N  N  42  
84G  C2   H3   SING  N  N  43  
84G  C4   H4   SING  N  N  44  
84G  C5   H5   SING  N  N  45  
84G  C5   H6   SING  N  N  46  
84G  O4   H7   SING  N  N  47  
84G  O    H8   SING  N  N  48  
84G  C    H9   SING  N  N  49  
84G  C    H10  SING  N  N  50  
84G  N    H11  SING  N  N  51  
84G  N    H12  SING  N  N  52  
84G  N1   H14  SING  N  N  53  
84G  C15  H15  SING  N  N  54  
84G  C16  H16  SING  N  N  55  
84G  C21  H17  SING  N  N  56  
84G  O9   H18  SING  N  N  57  
84G  C20  H19  SING  N  N  58  
84G  N5   H20  SING  N  N  59  
84G  N5   H21  SING  N  N  60  
84G  C19  H23  SING  N  N  61  
84G  O8   H24  SING  N  N  62  
84G  C17  H25  SING  N  N  63  
84G  C18  H26  SING  N  N  64  
84G  C18  H27  SING  N  N  65  
84G  O7   H28  SING  N  N  66  
84G  C14  H29  SING  N  N  67  
84G  C7   H30  SING  N  N  68  
84G  C6   H31  SING  N  N  69  
84G  N2   H32  SING  N  N  70  
84G  N2   H33  SING  N  N  71  
84G  C8   H35  SING  N  N  72  
84G  C13  H36  SING  N  N  73  
84G  N4   H37  SING  N  N  74  
84G  N4   H38  SING  N  N  75  
84G  C12  H40  SING  N  N  76  
84G  C12  H41  SING  N  N  77  
84G  C11  H42  SING  N  N  78  
84G  C11  H43  SING  N  N  79  
84G  C9   H44  SING  N  N  80  
84G  C10  H45  SING  N  N  81  
84G  C10  H46  SING  N  N  82  
84G  N3   H47  SING  N  N  83  
84G  N3   H48  SING  N  N  84  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
84G  SMILES            ACDLabs               12.01  "C(CN)C(C(=O)NC3C(OC1OC(C(C(C1O)N)O)CO)C(O)C(OC2OC(CCC2N)CN)C(C3)N)O"  
84G  InChI             InChI                 1.03   "InChI=1S/C22H44N6O10/c23-4-3-12(30)20(34)28-11-5-10(26)18(37-21-9(25)2-1-8(6-24)35-21)17(33)19(11)38-22-16(32)14(27)15(31)13(7-29)36-22/h8-19,21-22,29-33H,1-7,23-27H2,(H,28,34)/t8-,9+,10-,11+,12-,13+,14-,15+,16+,17-,18+,19-,21+,22+/m0/s1"  
84G  InChIKey          InChI                 1.03   MKKYBZZTJQGVCD-XTCKQBCOSA-N  
84G  SMILES_CANONICAL  CACTVS                3.385  "NCC[C@H](O)C(=O)N[C@@H]1C[C@H](N)[C@@H](O[C@H]2O[C@H](CN)CC[C@H]2N)[C@H](O)[C@H]1O[C@H]3O[C@H](CO)[C@@H](O)[C@H](N)[C@H]3O"  
84G  SMILES            CACTVS                3.385  "NCC[CH](O)C(=O)N[CH]1C[CH](N)[CH](O[CH]2O[CH](CN)CC[CH]2N)[CH](O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](N)[CH]3O"  
84G  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1C[C@H]([C@H](O[C@@H]1CN)O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)N)O)NC(=O)[C@H](CCN)O)N)N"  
84G  SMILES            "OpenEye OEToolkits"  2.0.6  "C1CC(C(OC1CN)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CO)O)N)O)NC(=O)C(CCN)O)N)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
84G  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-4-amino-N-{(1R,2S,3S,4R,5S)-5-amino-2-[(3-amino-3-deoxy-alpha-D-glucopyranosyl)oxy]-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide"  
84G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-~{N}-[(1~{R},2~{S},3~{S},4~{R},5~{S})-4-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[(2~{S},3~{R},4~{S},5~{S},6~{R})-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
84G  "Create component"  2016-12-23  RCSB  
84G  "Initial release"   2018-04-11  RCSB  
84G  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     84G
_pdbx_chem_comp_synonyms.name        "(2S)-4-amino-N-{(1R,2S,3S,4R,5S)-5-amino-2-[(3-amino-3-deoxy-alpha-D-glucopyranosyl)oxy]-4-[(2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranosyl)oxy]-3-hydroxycyclohexyl}-2-hydroxybutanamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
