data_78G
# 
_chem_comp.id                                    78G 
_chem_comp.name                                  
"2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H33 N10 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2016-09-12 
_chem_comp.pdbx_modified_date                    2017-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        549.560 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     78G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LV5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
78G N4  N1  N 0 1 Y N N 18.504 -8.287  -3.077 5.470  -1.380 1.929  N4  78G 1  
78G C19 C1  C 0 1 N N S 20.379 -12.300 6.075  -3.500 3.690  0.720  C19 78G 2  
78G C21 C2  C 0 1 N N N 21.211 -8.569  1.898  0.190  -0.262 -1.139 C21 78G 3  
78G C22 C3  C 0 1 N N N 21.121 -8.898  3.368  -0.493 0.746  -0.212 C22 78G 4  
78G O6  O1  O 0 1 N N N 22.542 -13.303 6.357  -2.426 5.818  0.077  O6  78G 5  
78G C20 C4  C 0 1 N N N 21.405 -13.044 6.948  -3.480 4.995  -0.034 C20 78G 6  
78G N5  N2  N 1 1 N N N 22.284 -9.730  3.843  -1.883 0.333  0.021  N5  78G 7  
78G O7  O2  O 0 1 N N N 21.127 -13.408 8.062  -4.414 5.300  -0.738 O7  78G 8  
78G C1  C5  C 0 1 Y N N 16.915 -9.968  -4.161 7.902  -0.660 1.693  C1  78G 9  
78G C10 C6  C 0 1 N N N 23.112 -8.959  4.822  -1.900 -0.932 0.768  C10 78G 10 
78G C11 C7  C 0 1 N N N 23.871 -7.850  4.170  -3.321 -1.418 0.900  C11 78G 11 
78G C12 C8  C 0 1 N N N 24.914 -8.041  3.178  -4.145 -0.946 1.942  C12 78G 12 
78G C13 C9  C 0 1 N N N 25.454 -5.754  3.179  -5.878 -2.261 1.161  C13 78G 13 
78G C14 C10 C 0 1 N N N 23.664 -6.571  4.552  -3.826 -2.311 0.016  C14 78G 14 
78G C15 C11 C 0 1 N N N 23.981 -4.172  4.466  -5.673 -3.700 -0.790 C15 78G 15 
78G C16 C12 C 0 1 N N N 25.127 -2.670  5.870  -5.886 -2.341 -2.752 C16 78G 16 
78G C17 C13 C 0 1 N N N 21.857 -11.070 4.385  -2.579 1.369  0.795  C17 78G 17 
78G C18 C14 C 0 1 N N N 20.916 -10.951 5.571  -2.662 2.654  -0.031 C18 78G 18 
78G C2  C15 C 0 1 Y N N 17.968 -9.540  -3.332 6.535  -0.747 1.380  C2  78G 19 
78G C3  C16 C 0 1 Y N N 18.608 -10.511 -2.574 6.067  -0.051 0.252  C3  78G 20 
78G C4  C17 C 0 1 Y N N 17.289 -12.098 -3.337 8.199  0.711  -0.140 C4  78G 21 
78G C5  C18 C 0 1 Y N N 19.452 -8.527  -2.204 4.405  -1.123 1.227  C5  78G 22 
78G C6  C19 C 0 1 N N R 20.517 -10.440 -0.923 3.794  0.203  -0.831 C6  78G 23 
78G C7  C20 C 0 1 N N R 21.310 -9.901  1.196  1.594  0.236  -1.488 C7  78G 24 
78G C8  C21 C 0 1 N N S 22.535 -10.073 0.304  2.271  -0.722 -2.492 C8  78G 25 
78G C9  C22 C 0 1 N N R 21.963 -9.986  -1.112 3.751  -0.745 -2.050 C9  78G 26 
78G N1  N3  N 0 1 Y N N 18.316 -11.816 -2.527 6.927  0.658  -0.472 N1  78G 27 
78G N10 N4  N 0 1 N N N 19.171 -12.009 6.873  -4.885 3.211  0.833  N10 78G 28 
78G N2  N5  N 0 1 Y N N 16.594 -11.274 -4.135 8.686  0.075  0.910  N2  78G 29 
78G N3  N6  N 0 1 Y N N 19.572 -9.849  -1.855 4.721  -0.307 0.182  N3  78G 30 
78G N6  N7  N 0 1 N N N 16.272 -9.160  -5.014 8.421  -1.323 2.791  N6  78G 31 
78G N7  N8  N 0 1 N N N 25.664 -7.027  2.733  -5.395 -1.382 2.038  N7  78G 32 
78G N8  N9  N 0 1 N N N 24.402 -5.525  4.065  -5.114 -2.734 0.159  N8  78G 33 
78G N9  N10 N 0 1 N N N 25.116 -9.255  2.654  -3.657 -0.039 2.853  N9  78G 34 
78G O1  O3  O 0 1 N N N 20.136 -10.043 0.373  2.443  0.207  -0.320 O1  78G 35 
78G O2  O4  O 0 1 N N N 22.632 -10.941 -1.915 4.593  -0.255 -3.096 O2  78G 36 
78G O3  O5  O 0 1 N N N 23.188 -11.316 0.565  2.153  -0.217 -3.824 O3  78G 37 
78G O4  O6  O 0 1 N N N 24.360 -3.853  5.777  -6.554 -3.027 -1.691 O4  78G 38 
78G O5  O7  O 0 1 N N N 26.227 -4.832  2.921  -7.031 -2.643 1.268  O5  78G 39 
78G H25 H1  H 0 1 N N N 20.116 -12.929 5.212  -3.086 3.840  1.717  H25 78G 40 
78G H29 H2  H 0 1 N N N 22.103 -7.959  1.694  0.262  -1.227 -0.637 H29 78G 41 
78G H30 H3  H 0 1 N N N 20.313 -8.026  1.569  -0.395 -0.370 -2.052 H30 78G 42 
78G H32 H4  H 0 1 N N N 21.102 -7.958  3.940  0.039  0.783  0.739  H32 78G 43 
78G H31 H5  H 0 1 N N N 20.190 -9.456  3.549  -0.479 1.732  -0.674 H31 78G 44 
78G H28 H6  H 0 1 N N N 23.094 -13.812 6.940  -2.459 6.643  -0.426 H28 78G 45 
78G H10 H8  H 0 1 N N N 22.448 -8.531  5.588  -1.309 -1.677 0.236  H10 78G 46 
78G H9  H9  H 0 1 N N N 23.827 -9.645  5.299  -1.477 -0.773 1.760  H9  78G 47 
78G H13 H10 H 0 1 N N N 22.885 -6.365  5.271  -3.216 -2.684 -0.793 H13 78G 48 
78G H16 H11 H 0 1 N N N 24.439 -3.444  3.780  -4.864 -4.167 -1.352 H16 78G 49 
78G H17 H12 H 0 1 N N N 22.885 -4.108  4.391  -6.226 -4.466 -0.246 H17 78G 50 
78G H20 H13 H 0 1 N N N 25.387 -2.483  6.922  -5.308 -3.054 -3.340 H20 78G 51 
78G H19 H14 H 0 1 N N N 26.048 -2.783  5.279  -6.623 -1.855 -3.392 H19 78G 52 
78G H18 H15 H 0 1 N N N 24.543 -1.823  5.481  -5.217 -1.588 -2.334 H18 78G 53 
78G H22 H16 H 0 1 N N N 21.346 -11.626 3.585  -3.585 1.027  1.038  H22 78G 54 
78G H21 H17 H 0 1 N N N 22.754 -11.623 4.702  -2.030 1.564  1.717  H21 78G 55 
78G H23 H18 H 0 1 N N N 21.457 -10.463 6.395  -3.126 2.438  -0.993 H23 78G 56 
78G H24 H19 H 0 1 N N N 20.061 -10.327 5.274  -1.658 3.047  -0.192 H24 78G 57 
78G H1  H20 H 0 1 N N N 16.977 -13.132 -3.350 8.871  1.297  -0.750 H1  78G 58 
78G H2  H21 H 0 1 N N N 20.083 -7.752  -1.795 3.416  -1.500 1.442  H2  78G 59 
78G H3  H22 H 0 1 N N N 20.481 -11.536 -1.009 4.085  1.206  -1.141 H3  78G 60 
78G H4  H23 H 0 1 N N N 21.322 -10.696 1.956  1.546  1.245  -1.899 H4  78G 61 
78G H5  H24 H 0 1 N N N 23.224 -9.231  0.468  1.834  -1.719 -2.423 H5  78G 62 
78G H6  H25 H 0 1 N N N 22.019 -8.962  -1.510 4.048  -1.753 -1.761 H6  78G 63 
78G H26 H26 H 0 1 N N N 18.787 -12.864 7.222  -5.444 3.847  1.381  H26 78G 64 
78G H27 H27 H 0 1 N N N 19.413 -11.415 7.640  -5.292 3.064  -0.079 H27 78G 65 
78G H12 H29 H 0 1 N N N 15.605 -9.690  -5.537 9.366  -1.255 2.997  H12 78G 66 
78G H11 H30 H 0 1 N N N 15.800 -8.443  -4.502 7.839  -1.856 3.355  H11 78G 67 
78G H14 H31 H 0 1 N N N 25.813 -9.386  1.949  -2.743 0.278  2.781  H14 78G 68 
78G H15 H32 H 0 1 N N N 24.570 -10.032 2.967  -4.227 0.284  3.569  H15 78G 69 
78G H7  H33 H 0 1 N N N 23.534 -10.672 -2.042 4.604  -0.812 -3.886 H7  78G 70 
78G H8  H34 H 0 1 N N N 23.523 -11.318 1.454  2.561  -0.780 -4.496 H8  78G 71 
78G H33 H35 H 0 1 N N N 22.861 -9.908  3.046  -2.349 0.206  -0.865 H33 78G 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
78G N6  C1  SING N N 1  
78G C1  N2  DOUB Y N 2  
78G C1  C2  SING Y N 3  
78G N2  C4  SING Y N 4  
78G C4  N1  DOUB Y N 5  
78G C2  N4  SING Y N 6  
78G C2  C3  DOUB Y N 7  
78G N4  C5  DOUB Y N 8  
78G C3  N1  SING Y N 9  
78G C3  N3  SING Y N 10 
78G C5  N3  SING Y N 11 
78G O2  C9  SING N N 12 
78G N3  C6  SING N N 13 
78G C9  C6  SING N N 14 
78G C9  C8  SING N N 15 
78G C6  O1  SING N N 16 
78G C8  O3  SING N N 17 
78G C8  C7  SING N N 18 
78G O1  C7  SING N N 19 
78G C7  C21 SING N N 20 
78G C21 C22 SING N N 21 
78G N9  C12 SING N N 22 
78G N7  C12 DOUB N N 23 
78G N7  C13 SING N N 24 
78G O5  C13 DOUB N N 25 
78G C12 C11 SING N N 26 
78G C13 N8  SING N N 27 
78G C22 N5  SING N N 28 
78G N5  C17 SING N N 29 
78G N5  C10 SING N N 30 
78G N8  C15 SING N N 31 
78G N8  C14 SING N N 32 
78G C11 C14 DOUB N N 33 
78G C11 C10 SING N N 34 
78G C17 C18 SING N N 35 
78G C15 O4  SING N N 36 
78G C18 C19 SING N N 37 
78G O4  C16 SING N N 38 
78G C19 N10 SING N N 39 
78G C19 C20 SING N N 40 
78G O6  C20 SING N N 41 
78G C20 O7  DOUB N N 42 
78G C19 H25 SING N N 43 
78G C21 H29 SING N N 44 
78G C21 H30 SING N N 45 
78G C22 H32 SING N N 46 
78G C22 H31 SING N N 47 
78G O6  H28 SING N N 48 
78G C10 H10 SING N N 49 
78G C10 H9  SING N N 50 
78G C14 H13 SING N N 51 
78G C15 H16 SING N N 52 
78G C15 H17 SING N N 53 
78G C16 H20 SING N N 54 
78G C16 H19 SING N N 55 
78G C16 H18 SING N N 56 
78G C17 H22 SING N N 57 
78G C17 H21 SING N N 58 
78G C18 H23 SING N N 59 
78G C18 H24 SING N N 60 
78G C4  H1  SING N N 61 
78G C5  H2  SING N N 62 
78G C6  H3  SING N N 63 
78G C7  H4  SING N N 64 
78G C8  H5  SING N N 65 
78G C9  H6  SING N N 66 
78G N10 H26 SING N N 67 
78G N10 H27 SING N N 68 
78G N6  H12 SING N N 69 
78G N6  H11 SING N N 70 
78G N9  H14 SING N N 71 
78G N9  H15 SING N N 72 
78G O2  H7  SING N N 73 
78G O3  H8  SING N N 74 
78G N5  H33 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
78G InChI            InChI                1.03  
"InChI=1S/C22H32N10O7/c1-38-10-31-7-11(17(24)29-22(31)37)6-30(4-2-12(23)21(35)36)5-3-13-15(33)16(34)20(39-13)32-9-28-14-18(25)26-8-27-19(14)32/h7-9,12-13,15-16,20,33-34H,2-6,10,23H2,1H3,(H,35,36)(H2,24,29,37)(H2,25,26,27)/p+1/t12-,13+,15+,16+,20+/m0/s1" 
78G InChIKey         InChI                1.03  GZMYJIXALPWXCM-WUMBASEESA-O 
78G SMILES_CANONICAL CACTVS               3.385 "COCN1C=C(C[NH+](CC[C@H](N)C(O)=O)CC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 
78G SMILES           CACTVS               3.385 "COCN1C=C(C[NH+](CC[CH](N)C(O)=O)CC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 
78G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)C[NH+](CC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)CC[C@@H](C(=O)O)N" 
78G SMILES           "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)C[NH+](CCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)CCC(C(=O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
78G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 
"2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]-[(3~{S})-3-azanyl-4-oxidanyl-4-oxidanylidene-butyl]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
78G "Create component"   2016-09-12 EBI  
78G "Other modification" 2016-09-17 EBI  
78G "Initial release"    2017-09-20 RCSB 
# 
