data_6YG
# 
_chem_comp.id                                    6YG 
_chem_comp.name                                  "(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N5 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-07-26 
_chem_comp.pdbx_modified_date                    2023-02-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        383.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6YG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5KX9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6YG N01 N1  N 0 1 Y N N 27.737 35.515 19.632 2.158  2.098  -0.140 N01 6YG 1  
6YG C02 C1  C 0 1 Y N N 28.017 36.728 20.040 1.893  0.861  0.231  C02 6YG 2  
6YG N03 N2  N 0 1 Y N N 27.765 37.205 21.285 2.820  -0.072 0.261  N03 6YG 3  
6YG C04 C2  C 0 1 Y N N 27.223 36.360 22.212 4.080  0.205  -0.089 C04 6YG 4  
6YG C05 C3  C 0 1 Y N N 26.925 35.069 21.882 4.399  1.505  -0.489 C05 6YG 5  
6YG C06 C4  C 0 1 Y N N 27.171 34.615 20.534 3.386  2.456  -0.504 C06 6YG 6  
6YG O07 O1  O 0 1 N N N 26.879 33.477 20.146 3.645  3.731  -0.885 O07 6YG 7  
6YG C08 C5  C 0 1 N N S 28.509 37.836 19.083 0.485  0.505  0.635  C08 6YG 8  
6YG C09 C6  C 0 1 N N N 27.955 39.105 19.751 -0.464 0.764  -0.538 C09 6YG 9  
6YG N10 N3  N 0 1 N N N 28.089 40.277 18.884 -1.839 0.437  -0.139 N10 6YG 10 
6YG C11 C7  C 0 1 N N N 27.295 40.065 17.663 -2.284 1.285  0.975  C11 6YG 11 
6YG C12 C8  C 0 1 N N N 27.825 38.884 16.874 -1.389 1.041  2.193  C12 6YG 12 
6YG C13 C9  C 0 1 N N N 27.828 37.619 17.721 0.062  1.367  1.827  C13 6YG 13 
6YG C14 C10 C 0 1 Y N N 27.049 36.996 23.511 5.116  -0.845 -0.054 C14 6YG 14 
6YG S15 S1  S 0 1 Y N N 27.458 38.652 23.767 4.830  -2.543 0.307  S15 6YG 15 
6YG C16 C11 C 0 1 Y N N 27.022 38.574 25.384 6.540  -2.905 0.109  C16 6YG 16 
6YG C17 C12 C 0 1 Y N N 26.541 37.369 25.715 7.205  -1.787 -0.202 C17 6YG 17 
6YG C18 C13 C 0 1 Y N N 26.556 36.445 24.652 6.429  -0.653 -0.298 C18 6YG 18 
6YG C19 C14 C 0 1 N N N 27.666 41.515 19.562 -2.757 0.542  -1.280 C19 6YG 19 
6YG C20 C15 C 0 1 Y N N 27.941 41.575 21.048 -4.098 -0.031 -0.900 C20 6YG 20 
6YG C21 C16 C 0 1 Y N N 26.914 41.775 21.959 -4.376 -1.375 -1.096 C21 6YG 21 
6YG N22 N4  N 0 1 Y N N 27.094 42.190 23.226 -5.563 -1.845 -0.751 N22 6YG 22 
6YG C23 C17 C 0 1 Y N N 28.356 42.439 23.542 -6.479 -1.050 -0.224 C23 6YG 23 
6YG N24 N5  N 0 1 Y N N 29.431 42.336 22.777 -6.247 0.238  -0.023 N24 6YG 24 
6YG C25 C18 C 0 1 Y N N 29.188 41.924 21.524 -5.079 0.772  -0.340 C25 6YG 25 
6YG O26 O2  O 0 1 N N N 28.530 42.860 24.800 -7.684 -1.565 0.118  O26 6YG 26 
6YG C27 C19 C 0 1 N N N 29.867 43.159 25.218 -8.639 -0.664 0.683  C27 6YG 27 
6YG H1  H1  H 0 1 N N N 26.511 34.397 22.619 5.407  1.764  -0.779 H1  6YG 28 
6YG H3  H3  H 0 1 N N N 29.606 37.855 19.001 0.441  -0.548 0.912  H3  6YG 29 
6YG H4  H4  H 0 1 N N N 28.508 39.287 20.684 -0.409 1.815  -0.824 H4  6YG 30 
6YG H5  H5  H 0 1 N N N 26.890 38.951 19.980 -0.174 0.142  -1.384 H5  6YG 31 
6YG H7  H7  H 0 1 N N N 27.347 40.969 17.038 -2.220 2.333  0.682  H7  6YG 32 
6YG H8  H8  H 0 1 N N N 26.249 39.872 17.942 -3.316 1.041  1.227  H8  6YG 33 
6YG H9  H9  H 0 1 N N N 27.187 38.725 15.992 -1.710 1.682  3.014  H9  6YG 34 
6YG H10 H10 H 0 1 N N N 28.853 39.101 16.548 -1.463 -0.003 2.495  H10 6YG 35 
6YG H11 H11 H 0 1 N N N 26.788 37.303 17.891 0.708  1.153  2.679  H11 6YG 36 
6YG H12 H12 H 0 1 N N N 28.367 36.829 17.177 0.143  2.421  1.562  H12 6YG 37 
6YG H13 H13 H 0 1 N N N 27.118 39.398 26.076 6.985  -3.882 0.222  H13 6YG 38 
6YG H14 H14 H 0 1 N N N 26.176 37.129 26.703 8.272  -1.775 -0.370 H14 6YG 39 
6YG H15 H15 H 0 1 N N N 26.217 35.423 24.733 6.839  0.315  -0.548 H15 6YG 40 
6YG H16 H16 H 0 1 N N N 28.191 42.357 19.087 -2.875 1.590  -1.556 H16 6YG 41 
6YG H17 H17 H 0 1 N N N 26.582 41.628 19.414 -2.351 -0.013 -2.125 H17 6YG 42 
6YG H18 H18 H 0 1 N N N 25.903 41.585 21.629 -3.632 -2.030 -1.526 H18 6YG 43 
6YG H19 H19 H 0 1 N N N 30.024 41.861 20.843 -4.894 1.822  -0.169 H19 6YG 44 
6YG H20 H20 H 0 1 N N N 29.858 43.491 26.267 -8.852 0.133  -0.030 H20 6YG 45 
6YG H21 H21 H 0 1 N N N 30.491 42.258 25.124 -9.558 -1.204 0.910  H21 6YG 46 
6YG H22 H22 H 0 1 N N N 30.279 43.958 24.584 -8.234 -0.233 1.598  H22 6YG 47 
6YG H2  H2  H 0 1 N N N 27.103 33.388 19.227 3.907  4.313  -0.158 H2  6YG 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6YG C12 C11 SING N N 1  
6YG C12 C13 SING N N 2  
6YG C11 N10 SING N N 3  
6YG C13 C08 SING N N 4  
6YG N10 C19 SING N N 5  
6YG N10 C09 SING N N 6  
6YG C08 C09 SING N N 7  
6YG C08 C02 SING N N 8  
6YG C19 C20 SING N N 9  
6YG N01 C02 DOUB Y N 10 
6YG N01 C06 SING Y N 11 
6YG C02 N03 SING Y N 12 
6YG O07 C06 SING N N 13 
6YG C06 C05 DOUB Y N 14 
6YG C20 C25 DOUB Y N 15 
6YG C20 C21 SING Y N 16 
6YG N03 C04 DOUB Y N 17 
6YG C25 N24 SING Y N 18 
6YG C05 C04 SING Y N 19 
6YG C21 N22 DOUB Y N 20 
6YG C04 C14 SING N N 21 
6YG N24 C23 DOUB Y N 22 
6YG N22 C23 SING Y N 23 
6YG C14 S15 SING Y N 24 
6YG C14 C18 DOUB Y N 25 
6YG C23 O26 SING N N 26 
6YG S15 C16 SING Y N 27 
6YG C18 C17 SING Y N 28 
6YG O26 C27 SING N N 29 
6YG C16 C17 DOUB Y N 30 
6YG C05 H1  SING N N 31 
6YG C08 H3  SING N N 32 
6YG C09 H4  SING N N 33 
6YG C09 H5  SING N N 34 
6YG C11 H7  SING N N 35 
6YG C11 H8  SING N N 36 
6YG C12 H9  SING N N 37 
6YG C12 H10 SING N N 38 
6YG C13 H11 SING N N 39 
6YG C13 H12 SING N N 40 
6YG C16 H13 SING N N 41 
6YG C17 H14 SING N N 42 
6YG C18 H15 SING N N 43 
6YG C19 H16 SING N N 44 
6YG C19 H17 SING N N 45 
6YG C21 H18 SING N N 46 
6YG C25 H19 SING N N 47 
6YG C27 H20 SING N N 48 
6YG C27 H21 SING N N 49 
6YG C27 H22 SING N N 50 
6YG O07 H2  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6YG SMILES           ACDLabs              12.01 "COc1ncc(cn1)CN1CCCC(C1)c1nc(O)cc(n1)c1cccs1"                                                                                                                       
6YG InChI            InChI                1.06  "InChI=1S/C19H21N5O2S/c1-26-19-20-9-13(10-21-19)11-24-6-2-4-14(12-24)18-22-15(8-17(25)23-18)16-5-3-7-27-16/h3,5,7-10,14H,2,4,6,11-12H2,1H3,(H,22,23,25)/t14-/m0/s1" 
6YG InChIKey         InChI                1.06  NVEPPHORIAFPBH-AWEZNQCLSA-N                                                                                                                                         
6YG SMILES_CANONICAL CACTVS               3.385 "COc1ncc(CN2CCC[C@@H](C2)c3nc(O)cc(n3)c4sccc4)cn1"                                                                                                                  
6YG SMILES           CACTVS               3.385 "COc1ncc(CN2CCC[CH](C2)c3nc(O)cc(n3)c4sccc4)cn1"                                                                                                                    
6YG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ncc(cn1)CN2CCC[C@@H](C2)c3nc(cc(n3)O)c4cccs4"                                                                                                                  
6YG SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ncc(cn1)CN2CCCC(C2)c3nc(cc(n3)O)c4cccs4"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6YG "SYSTEMATIC NAME" ACDLabs              12.01 "(6P)-2-{(3S)-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl}-6-(thiophen-2-yl)pyrimidin-4-ol" 
6YG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3~{S})-1-[(2-methoxypyrimidin-5-yl)methyl]piperidin-3-yl]-6-thiophen-2-yl-pyrimidin-4-ol"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6YG "Create component"   2016-07-26 RCSB 
6YG "Initial release"    2016-08-23 RCSB 
6YG "Other modification" 2023-02-13 RCSB 
# 
