data_5AG
# 
_chem_comp.id                                    5AG 
_chem_comp.name                                  "5'-azido-5'-deoxy-8-[(2-{[2-(3-ethynylphenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H23 N9 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-31 
_chem_comp.pdbx_modified_date                    2016-09-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        509.541 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5AG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DHS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5AG C2  C1  C 0  1 Y N N 13.838 -18.045 -45.125 6.171   3.108  -0.752 C2  5AG 1  
5AG C4  C2  C 0  1 Y N N 11.598 -17.633 -44.739 4.377   1.718  -0.388 C4  5AG 2  
5AG C5  C3  C 0  1 Y N N 11.470 -17.068 -45.984 3.514   2.819  -0.505 C5  5AG 3  
5AG C6  C4  C 0  1 Y N N 12.551 -16.988 -46.813 4.078   4.079  -0.766 C6  5AG 4  
5AG N9  N1  N 0  1 Y N N 10.408 -17.550 -44.172 3.575   0.626  -0.148 N9  5AG 5  
5AG CAA C5  C 0  1 N N N 11.491 -21.883 -44.128 -9.905  -0.962 -2.375 CAA 5AG 6  
5AG CAB C6  C 0  1 N N N 10.721 -21.417 -44.884 -9.309  -0.529 -1.461 CAB 5AG 7  
5AG CAC C7  C 0  1 Y N N 9.761  -20.861 -45.787 -8.583  -0.002 -0.345 CAC 5AG 8  
5AG CAD C8  C 0  1 Y N N 10.130 -20.113 -46.897 -7.347  0.614  -0.541 CAD 5AG 9  
5AG CBJ C9  C 0  1 Y N N 8.428  -21.091 -45.515 -9.112  -0.097 0.943  CBJ 5AG 10 
5AG CBI C10 C 0  1 Y N N 7.450  -20.579 -46.336 -8.408  0.414  2.014  CBI 5AG 11 
5AG CBH C11 C 0  1 Y N N 7.812  -19.833 -47.438 -7.180  1.018  1.813  CBH 5AG 12 
5AG CAE C12 C 0  1 Y N N 9.138  -19.608 -47.716 -6.655  1.125  0.538  CAE 5AG 13 
5AG CAF C13 C 0  1 N N N 9.457  -18.790 -48.935 -5.316  1.785  0.329  CAF 5AG 14 
5AG CAG C14 C 0  1 N N N 8.457  -17.642 -49.060 -4.210  0.732  0.419  CAG 5AG 15 
5AG NAH N2  N 0  1 N N N 8.431  -16.917 -47.784 -2.908  1.373  0.215  NAH 5AG 16 
5AG CAI C15 C 0  1 N N N 7.491  -16.053 -47.465 -1.781  0.636  0.253  CAI 5AG 17 
5AG OBG O1  O 0  1 N N N 6.581  -15.726 -48.213 -1.843  -0.558 0.454  OBG 5AG 18 
5AG CAJ C16 C 0  1 N N N 7.641  -15.448 -46.082 -0.442  1.295  0.043  CAJ 5AG 19 
5AG SAK S1  S 0  1 N N N 7.976  -16.661 -44.766 0.867   0.050  0.150  SAK 5AG 20 
5AG C8  C17 C 0  1 Y N N 9.603  -16.981 -45.039 2.280   1.067  -0.124 C8  5AG 21 
5AG N7  N3  N 0  1 Y N N 10.223 -16.670 -46.145 2.249   2.360  -0.334 N7  5AG 22 
5AG N6  N4  N 0  1 N N N 12.382 -16.435 -47.987 3.275   5.201  -0.896 N6  5AG 23 
5AG N1  N5  N 0  1 Y N N 13.764 -17.478 -46.393 5.399   4.172  -0.875 N1  5AG 24 
5AG N3  N6  N 0  1 Y N N 12.779 -18.112 -44.345 5.686   1.906  -0.517 N3  5AG 25 
5AG CAV C18 C 0  1 N N R 10.007 -18.021 -42.881 4.025   -0.755 0.045  CAV 5AG 26 
5AG OBF O2  O 0  1 N N N 8.754  -18.532 -43.247 3.123   -1.679 -0.600 OBF 5AG 27 
5AG CAW C19 C 0  1 N N R 9.640  -16.916 -41.896 3.940   -1.152 1.541  CAW 5AG 28 
5AG OAX O3  O 0  1 N N N 10.440 -17.046 -40.746 5.128   -0.772 2.238  OAX 5AG 29 
5AG CAY C20 C 0  1 N N S 8.214  -17.247 -41.486 3.816   -2.693 1.461  CAY 5AG 30 
5AG OAZ O4  O 0  1 N N N 8.075  -17.277 -40.074 5.090   -3.309 1.662  OAZ 5AG 31 
5AG CBA C21 C 0  1 N N R 8.117  -18.654 -41.992 3.309   -2.957 0.030  CBA 5AG 32 
5AG CBB C22 C 0  1 N N N 6.642  -18.959 -42.060 1.979   -3.712 0.079  CBB 5AG 33 
5AG NBC N7  N 0  1 N N N 6.458  -20.260 -41.439 1.557   -4.048 -1.283 NBC 5AG 34 
5AG NBD N8  N 1  1 N N N 6.683  -21.329 -42.141 1.413   -5.123 -1.577 NBD 5AG 35 
5AG NBE N9  N -1 1 N N N 6.901  -22.397 -42.839 1.268   -6.198 -1.872 NBE 5AG 36 
5AG H1  H1  H 0  1 N N N 14.781 -18.437 -44.774 7.240   3.227  -0.852 H1  5AG 37 
5AG H2  H2  H 0  1 N N N 12.185 -22.303 -43.446 -10.437 -1.349 -3.194 H2  5AG 38 
5AG H3  H3  H 0  1 N N N 11.172 -19.929 -47.116 -6.932  0.690  -1.535 H3  5AG 39 
5AG H4  H4  H 0  1 N N N 8.150  -21.677 -44.651 -10.071 -0.568 1.101  H4  5AG 40 
5AG H5  H5  H 0  1 N N N 6.408  -20.760 -46.119 -8.816  0.341  3.011  H5  5AG 41 
5AG H6  H6  H 0  1 N N N 7.050  -19.424 -48.085 -6.632  1.416  2.655  H6  5AG 42 
5AG H7  H7  H 0  1 N N N 9.396  -19.427 -49.829 -5.292  2.253  -0.655 H7  5AG 43 
5AG H8  H8  H 0  1 N N N 10.474 -18.381 -48.845 -5.161  2.543  1.096  H8  5AG 44 
5AG H9  H9  H 0  1 N N N 8.768  -16.963 -49.868 -4.234  0.263  1.403  H9  5AG 45 
5AG H10 H10 H 0  1 N N N 7.457  -18.042 -49.282 -4.365  -0.026 -0.349 H10 5AG 46 
5AG H11 H11 H 0  1 N N N 9.163  -17.088 -47.125 -2.858  2.328  0.054  H11 5AG 47 
5AG H12 H12 H 0  1 N N N 8.474  -14.730 -46.109 -0.418  1.764  -0.941 H12 5AG 48 
5AG H13 H13 H 0  1 N N N 6.709  -14.919 -45.834 -0.286  2.053  0.811  H13 5AG 49 
5AG H14 H14 H 0  1 N N N 13.249 -16.438 -48.485 3.677   6.067  -1.069 H14 5AG 50 
5AG H15 H15 H 0  1 N N N 11.699 -16.951 -48.503 2.312   5.121  -0.815 H15 5AG 51 
5AG H16 H16 H 0  1 N N N 10.692 -18.762 -42.443 5.041   -0.882 -0.329 H16 5AG 52 
5AG H17 H17 H 0  1 N N N 9.706  -15.922 -42.363 3.059   -0.715 2.010  H17 5AG 53 
5AG H18 H18 H 0  1 N N N 10.218 -16.361 -40.126 5.123   -0.999 3.178  H18 5AG 54 
5AG H19 H19 H 0  1 N N N 7.488  -16.583 -41.978 3.097   -3.057 2.195  H19 5AG 55 
5AG H20 H20 H 0  1 N N N 8.133  -16.393 -39.731 5.070   -4.275 1.622  H20 5AG 56 
5AG H21 H21 H 0  1 N N N 8.636  -19.355 -41.321 4.047   -3.538 -0.523 H21 5AG 57 
5AG H22 H22 H 0  1 N N N 6.071  -18.194 -41.514 2.103   -4.627 0.658  H22 5AG 58 
5AG H23 H23 H 0  1 N N N 6.308  -18.988 -43.108 1.223   -3.084 0.550  H23 5AG 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5AG CAG CAF SING N N 1  
5AG CAG NAH SING N N 2  
5AG CAF CAE SING N N 3  
5AG OBG CAI DOUB N N 4  
5AG N6  C6  SING N N 5  
5AG NAH CAI SING N N 6  
5AG CAE CBH DOUB Y N 7  
5AG CAE CAD SING Y N 8  
5AG CAI CAJ SING N N 9  
5AG CBH CBI SING Y N 10 
5AG CAD CAC DOUB Y N 11 
5AG C6  N1  DOUB Y N 12 
5AG C6  C5  SING Y N 13 
5AG N1  C2  SING Y N 14 
5AG CBI CBJ DOUB Y N 15 
5AG N7  C5  SING Y N 16 
5AG N7  C8  DOUB Y N 17 
5AG CAJ SAK SING N N 18 
5AG C5  C4  DOUB Y N 19 
5AG CAC CBJ SING Y N 20 
5AG CAC CAB SING N N 21 
5AG C2  N3  DOUB Y N 22 
5AG C8  SAK SING N N 23 
5AG C8  N9  SING Y N 24 
5AG CAB CAA TRIP N N 25 
5AG C4  N3  SING Y N 26 
5AG C4  N9  SING Y N 27 
5AG N9  CAV SING N N 28 
5AG OBF CAV SING N N 29 
5AG OBF CBA SING N N 30 
5AG CAV CAW SING N N 31 
5AG NBE NBD DOUB N N 32 
5AG NBD NBC DOUB N N 33 
5AG CBB CBA SING N N 34 
5AG CBB NBC SING N N 35 
5AG CBA CAY SING N N 36 
5AG CAW CAY SING N N 37 
5AG CAW OAX SING N N 38 
5AG CAY OAZ SING N N 39 
5AG C2  H1  SING N N 40 
5AG CAA H2  SING N N 41 
5AG CAD H3  SING N N 42 
5AG CBJ H4  SING N N 43 
5AG CBI H5  SING N N 44 
5AG CBH H6  SING N N 45 
5AG CAF H7  SING N N 46 
5AG CAF H8  SING N N 47 
5AG CAG H9  SING N N 48 
5AG CAG H10 SING N N 49 
5AG NAH H11 SING N N 50 
5AG CAJ H12 SING N N 51 
5AG CAJ H13 SING N N 52 
5AG N6  H14 SING N N 53 
5AG N6  H15 SING N N 54 
5AG CAV H16 SING N N 55 
5AG CAW H17 SING N N 56 
5AG OAX H18 SING N N 57 
5AG CAY H19 SING N N 58 
5AG OAZ H20 SING N N 59 
5AG CBA H21 SING N N 60 
5AG CBB H22 SING N N 61 
5AG CBB H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5AG SMILES           ACDLabs              12.01 "c4nc3n(C1C(C(O)C(O1)CN=[N+]=[N-])O)c(SCC(NCCc2cc(C#C)ccc2)=O)nc3c(n4)N" 
5AG InChI            InChI                1.03  
"InChI=1S/C22H23N9O4S/c1-2-12-4-3-5-13(8-12)6-7-25-15(32)10-36-22-29-16-19(23)26-11-27-20(16)31(22)21-18(34)17(33)14(35-21)9-28-30-24/h1,3-5,8,11,14,17-18,21,33-34H,6-7,9-10H2,(H,25,32)(H2,23,26,27)/t14-,17-,18-,21-/m1/s1" 
5AG InChIKey         InChI                1.03  HEZMFPGXYOAFRQ-HAXDFEGKSA-N 
5AG SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n([C@@H]3O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]3O)c(SCC(=O)NCCc4cccc(c4)C#C)nc12" 
5AG SMILES           CACTVS               3.385 "Nc1ncnc2n([CH]3O[CH](CN=[N+]=[N-])[CH](O)[CH]3O)c(SCC(=O)NCCc4cccc(c4)C#C)nc12" 
5AG SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C#Cc1cccc(c1)CCNC(=O)CSc2nc3c(ncnc3n2[C@H]4[C@@H]([C@@H]([C@H](O4)CN=[N+]=[N-])O)O)N" 
5AG SMILES           "OpenEye OEToolkits" 1.9.2 "C#Cc1cccc(c1)CCNC(=O)CSc2nc3c(ncnc3n2C4C(C(C(O4)CN=[N+]=[N-])O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5AG "SYSTEMATIC NAME" ACDLabs              12.01 "5'-azido-5'-deoxy-8-[(2-{[2-(3-ethynylphenyl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine"                                              
5AG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[6-azanyl-9-[(2R,3R,4S,5R)-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[2-(3-ethynylphenyl)ethyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5AG "Create component" 2015-08-31 EBI  
5AG "Initial release"  2016-09-14 RCSB 
# 
