data_4YG
# 
_chem_comp.id                                    4YG 
_chem_comp.name                                  "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H39 N5 O6 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        605.769 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4YG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RFU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4YG C22 C1  C 0 1 Y N N N N N 7.838  -5.295 25.748 8.767  0.766  0.368  C22 4YG 1  
4YG C23 C2  C 0 1 Y N N N N N 9.107  -5.816 25.514 8.740  0.595  -1.009 C23 4YG 2  
4YG C21 C3  C 0 1 Y N N N N N 7.141  -4.619 24.735 7.717  0.371  1.140  C21 4YG 3  
4YG C24 C4  C 0 1 Y N N N N N 9.705  -5.674 24.258 7.640  0.027  -1.612 C24 4YG 4  
4YG C20 C5  C 0 1 Y N N N N N 7.720  -4.466 23.451 6.578  -0.214 0.551  C20 4YG 5  
4YG C25 C6  C 0 1 Y N N N N N 8.998  -4.998 23.247 6.554  -0.378 -0.838 C25 4YG 6  
4YG C19 C7  C 0 1 Y N N N N N 7.980  -3.852 21.317 4.547  -1.163 0.367  C19 4YG 7  
4YG C17 C8  C 0 1 N N N N N N 6.295  1.228  18.054 3.077  1.801  -0.738 C17 4YG 8  
4YG C11 C9  C 0 1 N N N N N N 8.997  -0.462 21.722 -0.296 -0.975 0.125  C11 4YG 9  
4YG C6  C10 C 0 1 N N N N N N 10.255 2.295  22.309 -3.485 0.241  0.516  C6  4YG 10 
4YG C15 C11 C 0 1 N N N N N N 5.784  0.870  20.337 3.564  2.710  1.444  C15 4YG 11 
4YG C16 C12 C 0 1 N N N N N N 5.269  2.220  19.885 2.708  3.671  0.589  C16 4YG 12 
4YG C7  C13 C 0 1 N N N N N N 11.063 0.688  24.128 -2.836 -1.199 -1.474 C7  4YG 13 
4YG C14 C14 C 0 1 N N S N N N 6.831  0.516  19.278 3.404  1.377  0.677  C14 4YG 14 
4YG C10 C15 C 0 1 N N S N N N 10.442 -0.134 21.925 -1.643 -1.522 0.524  C10 4YG 15 
4YG C8  C16 C 0 1 N N S N N N 11.550 -0.715 23.991 -2.633 -2.726 -1.372 C8  4YG 16 
4YG C9  C17 C 0 1 N N R N N N 11.172 -1.226 22.643 -1.845 -2.936 -0.062 C9  4YG 17 
4YG C26 C18 C 0 1 N N N N N N 12.636 -1.221 23.054 -3.314 -3.468 -0.221 C26 4YG 18 
4YG C27 C19 C 0 1 N N N N N N 13.560 -0.224 22.449 -4.417 -2.734 0.545  C27 4YG 19 
4YG C28 C20 C 0 1 N N N N N N 13.245 -2.529 23.389 -3.505 -4.980 -0.363 C28 4YG 20 
4YG C1  C21 C 0 1 N N N N N N 8.720  4.994  24.422 -3.630 3.133  0.324  C1  4YG 21 
4YG C3  C22 C 0 1 N N N N N N 7.733  3.713  22.611 -2.961 1.978  -1.788 C3  4YG 22 
4YG C5  C23 C 0 1 N N N N N N 12.898 4.625  20.951 -7.472 -0.725 -0.338 C5  4YG 23 
4YG C13 C24 C 0 1 N N N N N N 6.926  -0.976 19.008 2.257  0.554  1.267  C13 4YG 24 
4YG C18 C25 C 0 1 N N S N N N 7.698  -3.230 19.982 3.231  -1.710 0.857  C18 4YG 25 
4YG C4  C26 C 0 1 N N S N N N 10.186 3.452  23.269 -4.605 0.904  -0.243 C4  4YG 26 
4YG C2  C27 C 0 1 N N N N N N 8.754  3.668  23.726 -4.114 2.235  -0.816 C2  4YG 27 
4YG C12 C28 C 0 1 N N S N N N 7.493  -1.731 20.205 2.105  -0.747 0.477  C12 4YG 28 
4YG N5  N1  N 0 1 Y N N N N N 7.161  -3.821 22.352 5.448  -0.667 1.127  N5  4YG 29 
4YG N4  N2  N 0 1 N N N N N N 5.252  2.054  18.463 2.696  3.090  -0.759 N4  4YG 30 
4YG N2  N3  N 0 1 N N N N N N 10.437 1.024  22.834 -2.739 -0.712 -0.078 N2  4YG 31 
4YG N3  N4  N 0 1 N N N N N N 8.788  -1.201 20.578 0.811  -1.360 0.790  N3  4YG 32 
4YG N1  N5  N 0 1 N N N N N N 10.695 4.624  22.500 -5.731 1.147  0.661  N1  4YG 33 
4YG O5  O1  O 0 1 N N N N N N 6.747  1.114  16.929 3.153  1.084  -1.713 O5  4YG 34 
4YG O4  O2  O 0 1 N N N N N N 8.145  -0.094 22.518 -0.208 -0.190 -0.795 O4  4YG 35 
4YG O3  O3  O 0 1 N N N N N N 10.110 2.506  21.115 -3.255 0.564  1.663  O3  4YG 36 
4YG O1  O4  O 0 1 N N N N N N 13.075 4.139  23.475 -7.300 1.836  -1.067 O1  4YG 37 
4YG O2  O5  O 0 1 N N N N N N 12.535 6.484  22.696 -8.090 1.347  1.226  O2  4YG 38 
4YG O6  O6  O 0 1 N N N N N N 6.517  -3.823 19.441 3.275  -1.855 2.278  O6  4YG 39 
4YG S2  S1  S 0 1 Y N N N N N 9.461  -4.682 21.619 5.021  -1.127 -1.272 S2  4YG 40 
4YG S1  S2  S 0 1 N N N N N N 12.371 5.047  22.586 -7.285 1.025  0.100  S1  4YG 41 
4YG H29 H1  H 0 1 N N N N N N 7.384  -5.412 26.721 9.633  1.213  0.834  H29 4YG 42 
4YG H30 H2  H 0 1 N N N N N N 9.632  -6.332 26.305 9.581  0.909  -1.608 H30 4YG 43 
4YG H28 H3  H 0 1 N N N N N N 6.160  -4.214 24.935 7.757  0.508  2.211  H28 4YG 44 
4YG H31 H4  H 0 1 N N N N N N 10.690 -6.075 24.068 7.620  -0.105 -2.684 H31 4YG 45 
4YG H23 H5  H 0 1 N N N N N N 4.974  0.126  20.354 4.606  3.027  1.462  H23 4YG 46 
4YG H24 H6  H 0 1 N N N N N N 6.241  0.937  21.335 3.165  2.629  2.456  H24 4YG 47 
4YG H25 H7  H 0 1 N N N N N N 5.948  3.031  20.187 1.694  3.727  0.985  H25 4YG 48 
4YG H26 H8  H 0 1 N N N N N N 4.261  2.419  20.279 3.160  4.663  0.570  H26 4YG 49 
4YG H13 H9  H 0 1 N N N N N N 11.903 1.367  24.335 -2.055 -0.751 -2.088 H13 4YG 50 
4YG H14 H10 H 0 1 N N N N N N 10.325 0.760  24.941 -3.819 -0.973 -1.887 H14 4YG 51 
4YG H22 H11 H 0 1 N N N N N N 7.814  0.920  19.561 4.334  0.810  0.700  H22 4YG 52 
4YG H17 H12 H 0 1 N N N N N N 10.931 0.107  20.970 -1.737 -1.543 1.609  H17 4YG 53 
4YG H15 H13 H 0 1 N N N N N N 11.316 -1.382 24.834 -2.383 -3.264 -2.286 H15 4YG 54 
4YG H16 H14 H 0 1 N N N N N N 10.693 -2.216 22.622 -1.022 -3.645 0.033  H16 4YG 55 
4YG H32 H15 H 0 1 N N N N N N 14.571 -0.365 22.858 -4.451 -1.694 0.224  H32 4YG 56 
4YG H33 H16 H 0 1 N N N N N N 13.584 -0.361 21.358 -5.377 -3.209 0.343  H33 4YG 57 
4YG H34 H17 H 0 1 N N N N N N 13.208 0.791  22.683 -4.208 -2.778 1.614  H34 4YG 58 
4YG H35 H18 H 0 1 N N N N N N 12.481 -3.188 23.827 -3.110 -5.481 0.521  H35 4YG 59 
4YG H36 H19 H 0 1 N N N N N N 13.647 -2.991 22.475 -4.567 -5.204 -0.464 H36 4YG 60 
4YG H37 H20 H 0 1 N N N N N N 14.059 -2.379 24.113 -2.974 -5.331 -1.248 H37 4YG 61 
4YG H3  H21 H 0 1 N N N N N N 9.453  4.997  25.242 -3.280 4.081  -0.084 H3  4YG 62 
4YG H1  H22 H 0 1 N N N N N N 8.968  5.791  23.705 -4.451 3.316  1.016  H1  4YG 63 
4YG H2  H23 H 0 1 N N N N N N 7.713  5.168  24.830 -2.812 2.641  0.851  H2  4YG 64 
4YG H6  H24 H 0 1 N N N N N N 6.731  3.872  23.037 -2.133 1.510  -1.255 H6  4YG 65 
4YG H5  H25 H 0 1 N N N N N N 7.975  4.538  21.925 -3.299 1.316  -2.586 H5  4YG 66 
4YG H7  H26 H 0 1 N N N N N N 7.750  2.761  22.060 -2.629 2.924  -2.217 H7  4YG 67 
4YG H12 H27 H 0 1 N N N N N N 13.971 4.842  20.844 -7.310 -1.340 0.547  H12 4YG 68 
4YG H11 H28 H 0 1 N N N N N N 12.721 3.554  20.774 -8.478 -0.898 -0.721 H11 4YG 69 
4YG H10 H29 H 0 1 N N N N N N 12.330 5.217  20.218 -6.741 -0.989 -1.102 H10 4YG 70 
4YG H21 H30 H 0 1 N N N N N N 5.920  -1.363 18.786 2.476  0.322  2.309  H21 4YG 71 
4YG H20 H31 H 0 1 N N N N N N 7.582  -1.140 18.140 1.331  1.126  1.208  H20 4YG 72 
4YG H38 H32 H 0 1 N N N N N N 8.556  -3.385 19.311 3.048  -2.682 0.399  H38 4YG 73 
4YG H8  H33 H 0 1 N N N N N N 10.831 3.259  24.139 -4.926 0.254  -1.057 H8  4YG 74 
4YG H4  H34 H 0 1 N N N N N N 8.479  2.875  24.437 -4.931 2.727  -1.344 H4  4YG 75 
4YG H19 H35 H 0 1 N N N N N N 6.798  -1.605 21.048 2.155  -0.532 -0.591 H19 4YG 76 
4YG H27 H36 H 0 1 N N N N N N 4.583  2.473  17.849 2.446  3.574  -1.561 H27 4YG 77 
4YG H18 H37 H 0 1 N N N N N N 9.567  -1.380 19.977 0.752  -2.043 1.477  H18 4YG 78 
4YG H9  H38 H 0 1 N N N N N N 10.179 5.421  22.812 -5.568 1.379  1.589  H9  4YG 79 
4YG H39 H39 H 0 1 N N N N N N 6.661  -4.753 19.309 3.434  -1.027 2.753  H39 4YG 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4YG O5  C17 DOUB N N 1  
4YG C17 N4  SING N N 2  
4YG C17 C14 SING N N 3  
4YG N4  C16 SING N N 4  
4YG C13 C14 SING N N 5  
4YG C13 C12 SING N N 6  
4YG C14 C15 SING N N 7  
4YG O6  C18 SING N N 8  
4YG C16 C15 SING N N 9  
4YG C18 C12 SING N N 10 
4YG C18 C19 SING N N 11 
4YG C12 N3  SING N N 12 
4YG N3  C11 SING N N 13 
4YG C5  S1  SING N N 14 
4YG O3  C6  DOUB N N 15 
4YG C19 S2  SING Y N 16 
4YG C19 N5  DOUB Y N 17 
4YG S2  C25 SING Y N 18 
4YG C11 C10 SING N N 19 
4YG C11 O4  DOUB N N 20 
4YG C10 C9  SING N N 21 
4YG C10 N2  SING N N 22 
4YG C6  N2  SING N N 23 
4YG C6  C4  SING N N 24 
4YG N5  C20 SING Y N 25 
4YG C27 C26 SING N N 26 
4YG N1  S1  SING N N 27 
4YG N1  C4  SING N N 28 
4YG S1  O2  DOUB N N 29 
4YG S1  O1  DOUB N N 30 
4YG C3  C2  SING N N 31 
4YG C9  C26 SING N N 32 
4YG C9  C8  SING N N 33 
4YG N2  C7  SING N N 34 
4YG C26 C28 SING N N 35 
4YG C26 C8  SING N N 36 
4YG C25 C20 DOUB Y N 37 
4YG C25 C24 SING Y N 38 
4YG C4  C2  SING N N 39 
4YG C20 C21 SING Y N 40 
4YG C2  C1  SING N N 41 
4YG C8  C7  SING N N 42 
4YG C24 C23 DOUB Y N 43 
4YG C21 C22 DOUB Y N 44 
4YG C23 C22 SING Y N 45 
4YG C22 H29 SING N N 46 
4YG C23 H30 SING N N 47 
4YG C21 H28 SING N N 48 
4YG C24 H31 SING N N 49 
4YG C15 H23 SING N N 50 
4YG C15 H24 SING N N 51 
4YG C16 H25 SING N N 52 
4YG C16 H26 SING N N 53 
4YG C7  H13 SING N N 54 
4YG C7  H14 SING N N 55 
4YG C14 H22 SING N N 56 
4YG C10 H17 SING N N 57 
4YG C8  H15 SING N N 58 
4YG C9  H16 SING N N 59 
4YG C27 H32 SING N N 60 
4YG C27 H33 SING N N 61 
4YG C27 H34 SING N N 62 
4YG C28 H35 SING N N 63 
4YG C28 H36 SING N N 64 
4YG C28 H37 SING N N 65 
4YG C1  H3  SING N N 66 
4YG C1  H1  SING N N 67 
4YG C1  H2  SING N N 68 
4YG C3  H6  SING N N 69 
4YG C3  H5  SING N N 70 
4YG C3  H7  SING N N 71 
4YG C5  H12 SING N N 72 
4YG C5  H11 SING N N 73 
4YG C5  H10 SING N N 74 
4YG C13 H21 SING N N 75 
4YG C13 H20 SING N N 76 
4YG C18 H38 SING N N 77 
4YG C4  H8  SING N N 78 
4YG C2  H4  SING N N 79 
4YG C12 H19 SING N N 80 
4YG N4  H27 SING N N 81 
4YG N3  H18 SING N N 82 
4YG N1  H9  SING N N 83 
4YG O6  H39 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4YG SMILES           ACDLabs              12.01 "CC(C)C(NS(C)(=O)=O)C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3ccccc3s1)C2(C)C"                                                                                                                                                                           
4YG InChI            InChI                1.03  "InChI=1S/C28H39N5O6S2/c1-14(2)21(32-41(5,38)39)27(37)33-13-16-20(28(16,3)4)22(33)25(36)30-18(12-15-10-11-29-24(15)35)23(34)26-31-17-8-6-7-9-19(17)40-26/h6-9,14-16,18,20-23,32,34H,10-13H2,1-5H3,(H,29,35)(H,30,36)/t15-,16-,18-,20-,21-,22-,23-/m0/s1" 
4YG InChIKey         InChI                1.03  FSCAOQMZHZLHRY-DECHFVIOSA-N                                                                                                                                                                                                                              
4YG SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](N[S](C)(=O)=O)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)c4sc5ccccc5n4)C2(C)C"                                                                                                                                          
4YG SMILES           CACTVS               3.385 "CC(C)[CH](N[S](C)(=O)=O)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)c4sc5ccccc5n4)C2(C)C"                                                                                                                                                    
4YG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C"                                                                                                                                          
4YG SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC2C(C1C(=O)NC(CC3CCNC3=O)C(c4nc5ccccc5s4)O)C2(C)C)NS(=O)(=O)C"                                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4YG "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-[N-(methanesulfonyl)-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                                      
4YG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-6,6-dimethyl-3-[(2~{S})-3-methyl-2-(methylsulfonylamino)butanoyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4YG "Create component" 2021-07-15 RCSB 
4YG "Initial release"  2021-11-10 RCSB 
4YG "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4YG 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C18 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
