data_3YG
# 
_chem_comp.id                                    3YG 
_chem_comp.name                                  "(S)-2-({5-[3-(2-Amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)-propyl]-thiophene-3-carbonyl}-amino)-pentanedioic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H21 N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-10 
_chem_comp.pdbx_modified_date                    2015-12-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        447.465 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3YG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZZ2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3YG N1  N1  N 0 1 N N N 49.818 11.011 26.643 7.441  -0.258 1.348  N1  3YG 1  
3YG C2  C1  C 0 1 N N N 50.870 11.169 25.856 8.205  0.809  1.279  C2  3YG 2  
3YG N3  N2  N 0 1 N N N 51.504 12.352 25.739 8.033  1.763  0.321  N3  3YG 3  
3YG C4  C2  C 0 1 N N N 51.097 13.449 26.403 7.052  1.633  -0.601 C4  3YG 4  
3YG C6  C3  C 0 1 Y N N 48.193 13.362 28.680 4.717  -1.167 -0.769 C6  3YG 5  
3YG C8  C4  C 0 1 Y N N 49.958 13.329 27.262 6.224  0.490  -0.538 C8  3YG 6  
3YG N5  N3  N 0 1 Y N N 48.307 12.117 28.198 5.524  -1.449 0.306  N5  3YG 7  
3YG C7  C5  C 0 1 Y N N 49.207 14.182 28.126 5.093  -0.003 -1.323 C7  3YG 8  
3YG C9  C6  C 0 1 Y N N 49.332 12.056 27.351 6.448  -0.459 0.469  C9  3YG 9  
3YG O10 O1  O 0 1 N N N 51.699 14.517 26.272 6.886  2.479  -1.463 O10 3YG 10 
3YG N11 N4  N 0 1 N N N 51.353 10.070 25.137 9.207  0.968  2.202  N11 3YG 11 
3YG C12 C7  C 0 1 Y N N 49.281 11.371 32.968 -0.971 -1.024 -1.089 C12 3YG 12 
3YG C13 C8  C 0 1 Y N N 50.099 10.874 34.016 -2.148 -0.745 -0.300 C13 3YG 13 
3YG C14 C9  C 0 1 Y N N 51.113 11.687 34.421 -2.201 -1.468 0.851  C14 3YG 14 
3YG S15 S1  S 0 1 Y N N 50.984 13.076 33.441 -0.839 -2.485 0.991  S15 3YG 15 
3YG C16 C10 C 0 1 Y N N 49.634 12.609 32.518 -0.177 -1.934 -0.538 C16 3YG 16 
3YG C17 C11 C 0 1 N N N 49.883 9.587  34.624 -3.183 0.222  -0.699 C17 3YG 17 
3YG O18 O2  O 0 1 N N N 50.756 9.076  35.360 -3.072 0.835  -1.743 O18 3YG 18 
3YG N19 N5  N 0 1 N N N 48.657 8.876  34.383 -4.254 0.427  0.093  N19 3YG 19 
3YG C20 C12 C 0 1 N N S 48.434 7.589  34.981 -5.285 1.389  -0.305 C20 3YG 20 
3YG C21 C13 C 0 1 N N N 47.198 7.606  35.803 -6.614 1.016  0.356  C21 3YG 21 
3YG C22 C14 C 0 1 N N N 47.196 8.744  36.814 -7.090 -0.334 -0.184 C22 3YG 22 
3YG C23 C15 C 0 1 N N N 45.893 8.775  37.651 -8.399 -0.701 0.467  C23 3YG 23 
3YG O24 O3  O 0 1 N N N 45.381 7.677  38.073 -9.009 -1.852 0.144  O24 3YG 24 
3YG O25 O4  O 0 1 N N N 45.311 9.916  37.923 -8.899 0.040  1.280  O25 3YG 25 
3YG C26 C16 C 0 1 N N N 48.272 6.532  33.883 -4.877 2.772  0.134  C26 3YG 26 
3YG O27 O5  O 0 1 N N N 48.564 5.292  34.148 -5.674 3.821  -0.125 O27 3YG 27 
3YG O28 O6  O 0 1 N N N 47.848 6.872  32.719 -3.832 2.937  0.718  O28 3YG 28 
3YG C29 C17 C 0 1 N N N 47.119 13.774 29.720 3.583  -2.033 -1.253 C29 3YG 29 
3YG C30 C18 C 0 1 N N N 47.541 13.097 31.085 2.269  -1.540 -0.645 C30 3YG 30 
3YG C31 C19 C 0 1 N N N 49.006 13.415 31.418 1.117  -2.419 -1.137 C31 3YG 31 
3YG H1  H1  H 0 1 N N N 52.302 12.417 25.140 8.615  2.539  0.301  H1  3YG 32 
3YG H2  H2  H 0 1 N N N 47.712 11.350 28.438 5.447  -2.236 0.867  H2  3YG 33 
3YG H3  H3  H 0 1 N N N 49.376 15.231 28.317 4.647  0.477  -2.181 H3  3YG 34 
3YG H4  H4  H 0 1 N N N 50.904 9.181  25.222 9.343  0.299  2.891  H4  3YG 35 
3YG H5  H5  H 0 1 N N N 52.147 10.174 24.538 9.780  1.750  2.166  H5  3YG 36 
3YG H6  H6  H 0 1 N N N 48.449 10.815 32.561 -0.761 -0.544 -2.034 H6  3YG 37 
3YG H7  H7  H 0 1 N N N 51.841 11.494 35.195 -2.997 -1.406 1.578  H7  3YG 38 
3YG H8  H8  H 0 1 N N N 47.955 9.280  33.796 -4.343 -0.062 0.926  H8  3YG 39 
3YG H9  H9  H 0 1 N N N 49.290 7.313  35.614 -5.401 1.371  -1.388 H9  3YG 40 
3YG H10 H10 H 0 1 N N N 46.331 7.723  35.136 -6.476 0.947  1.436  H10 3YG 41 
3YG H11 H11 H 0 1 N N N 47.119 6.651  36.344 -7.358 1.780  0.133  H11 3YG 42 
3YG H12 H12 H 0 1 N N N 48.052 8.617  37.494 -7.228 -0.265 -1.263 H12 3YG 43 
3YG H13 H13 H 0 1 N N N 47.295 9.698  36.275 -6.346 -1.098 0.040  H13 3YG 44 
3YG H14 H14 H 0 1 N N N 44.588 7.864  38.562 -9.846 -2.045 0.588  H14 3YG 45 
3YG H15 H15 H 0 1 N N N 48.411 4.758  33.377 -5.370 4.688  0.176  H15 3YG 46 
3YG H16 H16 H 0 1 N N N 47.094 14.868 29.829 3.523  -1.979 -2.340 H16 3YG 47 
3YG H17 H17 H 0 1 N N N 46.128 13.414 29.407 3.759  -3.065 -0.951 H17 3YG 48 
3YG H18 H18 H 0 1 N N N 46.897 13.477 31.891 2.329  -1.595 0.442  H18 3YG 49 
3YG H19 H19 H 0 1 N N N 47.418 12.007 31.001 2.093  -0.508 -0.948 H19 3YG 50 
3YG H20 H20 H 0 1 N N N 49.599 13.254 30.505 1.293  -3.451 -0.834 H20 3YG 51 
3YG H21 H21 H 0 1 N N N 49.060 14.475 31.708 1.058  -2.365 -2.224 H21 3YG 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3YG N11 C2  SING N N 1  
3YG N3  C2  SING N N 2  
3YG N3  C4  SING N N 3  
3YG C2  N1  DOUB N N 4  
3YG O10 C4  DOUB N N 5  
3YG C4  C8  SING N N 6  
3YG N1  C9  SING N N 7  
3YG C8  C9  DOUB Y N 8  
3YG C8  C7  SING Y N 9  
3YG C9  N5  SING Y N 10 
3YG C7  C6  DOUB Y N 11 
3YG N5  C6  SING Y N 12 
3YG C6  C29 SING N N 13 
3YG C29 C30 SING N N 14 
3YG C30 C31 SING N N 15 
3YG C31 C16 SING N N 16 
3YG C16 C12 DOUB Y N 17 
3YG C16 S15 SING Y N 18 
3YG O28 C26 DOUB N N 19 
3YG C12 C13 SING Y N 20 
3YG S15 C14 SING Y N 21 
3YG C26 O27 SING N N 22 
3YG C26 C20 SING N N 23 
3YG C13 C14 DOUB Y N 24 
3YG C13 C17 SING N N 25 
3YG N19 C17 SING N N 26 
3YG N19 C20 SING N N 27 
3YG C17 O18 DOUB N N 28 
3YG C20 C21 SING N N 29 
3YG C21 C22 SING N N 30 
3YG C22 C23 SING N N 31 
3YG C23 O25 DOUB N N 32 
3YG C23 O24 SING N N 33 
3YG N3  H1  SING N N 34 
3YG N5  H2  SING N N 35 
3YG C7  H3  SING N N 36 
3YG N11 H4  SING N N 37 
3YG N11 H5  SING N N 38 
3YG C12 H6  SING N N 39 
3YG C14 H7  SING N N 40 
3YG N19 H8  SING N N 41 
3YG C20 H9  SING N N 42 
3YG C21 H10 SING N N 43 
3YG C21 H11 SING N N 44 
3YG C22 H12 SING N N 45 
3YG C22 H13 SING N N 46 
3YG O24 H14 SING N N 47 
3YG O27 H15 SING N N 48 
3YG C29 H16 SING N N 49 
3YG C29 H17 SING N N 50 
3YG C30 H18 SING N N 51 
3YG C30 H19 SING N N 52 
3YG C31 H20 SING N N 53 
3YG C31 H21 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3YG SMILES           ACDLabs              12.01 "N=1c3c(C(NC=1N)=O)cc(CCCc2cc(cs2)C(=O)NC(CCC(=O)O)C(O)=O)n3"                                                                                                                                 
3YG InChI            InChI                1.03  "InChI=1S/C19H21N5O6S/c20-19-23-15-12(17(28)24-19)7-10(21-15)2-1-3-11-6-9(8-31-11)16(27)22-13(18(29)30)4-5-14(25)26/h6-8,13H,1-5H2,(H,22,27)(H,25,26)(H,29,30)(H4,20,21,23,24,28)/t13-/m0/s1" 
3YG InChIKey         InChI                1.03  RMEHPWHLFJJYTB-ZDUSSCGKSA-N                                                                                                                                                                   
3YG SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2[nH]c(CCCc3scc(c3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                            
3YG SMILES           CACTVS               3.385 "NC1=Nc2[nH]c(CCCc3scc(c3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                              
3YG SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(csc1CCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                            
3YG SMILES           "OpenEye OEToolkits" 1.9.2 "c1c(csc1CCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3YG "SYSTEMATIC NAME" ACDLabs              12.01 "N-({5-[3-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-3-yl}carbonyl)-L-glutamic acid"                   
3YG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[5-[3-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)propyl]thiophen-3-yl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3YG "Create component" 2014-12-10 RCSB 
3YG "Modify name"      2015-06-09 RCSB 
3YG "Initial release"  2015-12-16 RCSB 
# 
