data_18G
#

_chem_comp.id                                   18G
_chem_comp.name                                 "5-[3-(2,5-dimethoxy-4-phenylphenyl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H24 N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-[(3S)-3-(2,5-dimethoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-11-01
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.462
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    18G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4HOE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
18G  N2   N2   N  0  1  N  N  N  -1.967   1.309  26.291   7.020  -2.375  -0.908  N2   18G   1  
18G  C14  C14  C  0  1  Y  N  N  -1.318   2.002  27.234   5.927  -1.574  -0.632  C14  18G   2  
18G  N1   N1   N  0  1  Y  N  N   0.018   1.822  27.328   6.129  -0.330  -0.223  N1   18G   3  
18G  C13  C13  C  0  1  Y  N  N   0.671   2.539  28.266   5.106   0.469   0.052  C13  18G   4  
18G  N    N    N  0  1  N  N  N   1.997   2.383  28.328   5.321   1.767   0.478  N    18G   5  
18G  N3   N3   N  0  1  Y  N  N  -2.051   2.832  28.004   4.709  -2.072  -0.789  N3   18G   6  
18G  C15  C15  C  0  1  Y  N  N  -1.402   3.541  28.940   3.635  -1.343  -0.536  C15  18G   7  
18G  C16  C16  C  0  1  N  N  N  -2.241   4.446  29.793   2.257  -1.924  -0.719  C16  18G   8  
18G  C12  C12  C  0  1  Y  N  N  -0.008   3.441  29.130   3.795  -0.028  -0.098  C12  18G   9  
18G  C11  C11  C  0  1  N  N  N   0.747   4.151  30.117   2.659   0.797   0.186  C11  18G  10  
18G  C10  C10  C  0  1  N  N  N   1.440   4.702  30.910   1.728   1.472   0.420  C10  18G  11  
18G  C8   C8   C  0  1  N  N  S   2.274   5.386  31.890   0.560   2.319   0.712  C8   18G  12  
18G  C9   C9   C  0  1  N  N  N   3.294   4.400  32.495   0.608   2.766   2.175  C9   18G  13  
18G  C7   C7   C  0  1  Y  N  N   1.505   6.041  33.000  -0.703   1.535   0.467  C7   18G  14  
18G  C1   C1   C  0  1  Y  N  N   1.899   7.259  33.556  -1.619   1.977  -0.478  C1   18G  15  
18G  O    O    O  0  1  N  N  N   2.984   7.845  32.961  -1.373   3.116  -1.180  O    18G  16  
18G  C    C    C  0  1  N  N  N   3.598   8.946  33.627  -2.358   3.513  -2.136  C    18G  17  
18G  C6   C6   C  0  1  Y  N  N   0.393   5.403  33.545  -0.943   0.376   1.180  C6   18G  18  
18G  C4   C4   C  0  1  Y  N  N  -0.288   5.944  34.618  -2.103  -0.349   0.958  C4   18G  19  
18G  O1   O1   O  0  1  N  N  N  -1.391   5.361  35.181  -2.338  -1.488   1.660  O1   18G  20  
18G  C5   C5   C  0  1  N  N  N  -1.850   4.134  34.621  -1.346  -1.881   2.611  C5   18G  21  
18G  C3   C3   C  0  1  Y  N  N   0.125   7.150  35.192  -3.031   0.095   0.012  C3   18G  22  
18G  C2   C2   C  0  1  Y  N  N   1.222   7.805  34.633  -2.781   1.261  -0.707  C2   18G  23  
18G  C17  C17  C  0  1  Y  N  N  -0.530   7.722  36.403  -4.274  -0.677  -0.229  C17  18G  24  
18G  C22  C22  C  0  1  Y  N  N  -0.928   9.057  36.440  -5.510  -0.032  -0.224  C22  18G  25  
18G  C21  C21  C  0  1  Y  N  N  -1.582   9.572  37.549  -6.663  -0.756  -0.450  C21  18G  26  
18G  C20  C20  C  0  1  Y  N  N  -1.844   8.766  38.637  -6.595  -2.117  -0.682  C20  18G  27  
18G  C19  C19  C  0  1  Y  N  N  -1.451   7.444  38.621  -5.371  -2.762  -0.688  C19  18G  28  
18G  C18  C18  C  0  1  Y  N  N  -0.796   6.924  37.515  -4.211  -2.048  -0.469  C18  18G  29  
18G  H1   H1   H  0  1  N  N  N  -1.316   0.742  25.786   7.918  -2.024  -0.802  H1   18G  30  
18G  H2   H2   H  0  1  N  N  N  -2.655   0.724  26.721   6.889  -3.290  -1.204  H2   18G  31  
18G  H3   H3   H  0  1  N  N  N   2.289   1.727  27.632   6.227   2.101   0.577  H3   18G  32  
18G  H4   H4   H  0  1  N  N  N   2.444   3.263  28.166   4.567   2.344   0.676  H4   18G  33  
18G  H5   H5   H  0  1  N  N  N  -3.295   4.366  29.487   1.932  -2.389   0.211  H5   18G  34  
18G  H6   H6   H  0  1  N  N  N  -2.142   4.151  30.848   1.561  -1.130  -0.990  H6   18G  35  
18G  H7   H7   H  0  1  N  N  N  -1.901   5.485  29.670   2.280  -2.672  -1.511  H7   18G  36  
18G  H8   H8   H  0  1  N  N  N   2.846   6.169  31.370   0.576   3.196   0.064  H8   18G  37  
18G  H9   H9   H  0  1  N  N  N   3.919   4.925  33.233   1.522   3.333   2.352  H9   18G  38  
18G  H10  H10  H  0  1  N  N  N   2.759   3.575  32.988  -0.257   3.393   2.391  H10  18G  39  
18G  H11  H11  H  0  1  N  N  N   3.932   3.996  31.695   0.592   1.890   2.823  H11  18G  40  
18G  H12  H12  H  0  1  N  N  N   4.449   9.307  33.031  -2.476   2.728  -2.883  H12  18G  41  
18G  H13  H13  H  0  1  N  N  N   2.865   9.757  33.747  -3.309   3.680  -1.631  H13  18G  42  
18G  H14  H14  H  0  1  N  N  N   3.954   8.624  34.617  -2.040   4.434  -2.625  H14  18G  43  
18G  H15  H15  H  0  1  N  N  N   0.057   4.468  33.121  -0.225   0.034   1.910  H15  18G  44  
18G  H16  H16  H  0  1  N  N  N  -2.737   3.788  35.172  -1.656  -2.804   3.100  H16  18G  45  
18G  H17  H17  H  0  1  N  N  N  -2.113   4.289  33.564  -0.396  -2.042   2.100  H17  18G  46  
18G  H18  H18  H  0  1  N  N  N  -1.055   3.378  34.694  -1.227  -1.096   3.358  H18  18G  47  
18G  H19  H19  H  0  1  N  N  N   1.547   8.749  35.045  -3.493   1.606  -1.443  H19  18G  48  
18G  H20  H20  H  0  1  N  N  N  -0.725   9.698  35.595  -5.565   1.031  -0.042  H20  18G  49  
18G  H21  H21  H  0  1  N  N  N  -1.887  10.608  37.561  -7.622  -0.257  -0.445  H21  18G  50  
18G  H22  H22  H  0  1  N  N  N  -2.355   9.169  39.499  -7.500  -2.679  -0.858  H22  18G  51  
18G  H23  H23  H  0  1  N  N  N  -1.654   6.812  39.473  -5.324  -3.826  -0.870  H23  18G  52  
18G  H24  H24  H  0  1  N  N  N  -0.488   5.889  37.515  -3.255  -2.552  -0.479  H24  18G  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
18G  N2   C14  SING  N  N   1  
18G  C14  N1   DOUB  Y  N   2  
18G  C14  N3   SING  Y  N   3  
18G  N1   C13  SING  Y  N   4  
18G  N3   C15  DOUB  Y  N   5  
18G  C13  N    SING  N  N   6  
18G  C13  C12  DOUB  Y  N   7  
18G  C15  C12  SING  Y  N   8  
18G  C15  C16  SING  N  N   9  
18G  C12  C11  SING  N  N  10  
18G  C11  C10  TRIP  N  N  11  
18G  C10  C8   SING  N  N  12  
18G  C8   C9   SING  N  N  13  
18G  C8   C7   SING  N  N  14  
18G  O    C1   SING  N  N  15  
18G  O    C    SING  N  N  16  
18G  C7   C6   DOUB  Y  N  17  
18G  C7   C1   SING  Y  N  18  
18G  C6   C4   SING  Y  N  19  
18G  C1   C2   DOUB  Y  N  20  
18G  C4   O1   SING  N  N  21  
18G  C4   C3   DOUB  Y  N  22  
18G  C5   O1   SING  N  N  23  
18G  C2   C3   SING  Y  N  24  
18G  C3   C17  SING  N  N  25  
18G  C17  C22  DOUB  Y  N  26  
18G  C17  C18  SING  Y  N  27  
18G  C22  C21  SING  Y  N  28  
18G  C18  C19  DOUB  Y  N  29  
18G  C21  C20  DOUB  Y  N  30  
18G  C19  C20  SING  Y  N  31  
18G  N2   H1   SING  N  N  32  
18G  N2   H2   SING  N  N  33  
18G  N    H3   SING  N  N  34  
18G  N    H4   SING  N  N  35  
18G  C16  H5   SING  N  N  36  
18G  C16  H6   SING  N  N  37  
18G  C16  H7   SING  N  N  38  
18G  C8   H8   SING  N  N  39  
18G  C9   H9   SING  N  N  40  
18G  C9   H10  SING  N  N  41  
18G  C9   H11  SING  N  N  42  
18G  C    H12  SING  N  N  43  
18G  C    H13  SING  N  N  44  
18G  C    H14  SING  N  N  45  
18G  C6   H15  SING  N  N  46  
18G  C5   H16  SING  N  N  47  
18G  C5   H17  SING  N  N  48  
18G  C5   H18  SING  N  N  49  
18G  C2   H19  SING  N  N  50  
18G  C22  H20  SING  N  N  51  
18G  C21  H21  SING  N  N  52  
18G  C20  H22  SING  N  N  53  
18G  C19  H23  SING  N  N  54  
18G  C18  H24  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
18G  SMILES            ACDLabs               12.01  "C(#CC(c2cc(OC)c(c1ccccc1)cc2OC)C)c3c(nc(nc3C)N)N"  
18G  InChI             InChI                 1.03   "InChI=1S/C23H24N4O2/c1-14(10-11-17-15(2)26-23(25)27-22(17)24)18-12-21(29-4)19(13-20(18)28-3)16-8-6-5-7-9-16/h5-9,12-14H,1-4H3,(H4,24,25,26,27)/t14-/m0/s1"  
18G  InChIKey          InChI                 1.03   TWSMBNBBXDQFQK-AWEZNQCLSA-N  
18G  SMILES_CANONICAL  CACTVS                3.370  "COc1cc(c(OC)cc1[C@@H](C)C#Cc2c(C)nc(N)nc2N)c3ccccc3"  
18G  SMILES            CACTVS                3.370  "COc1cc(c(OC)cc1[CH](C)C#Cc2c(C)nc(N)nc2N)c3ccccc3"  
18G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1c(c(nc(n1)N)N)C#C[C@H](C)c2cc(c(cc2OC)c3ccccc3)OC"  
18G  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1c(c(nc(n1)N)N)C#CC(C)c2cc(c(cc2OC)c3ccccc3)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
18G  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-[(3S)-3-(2,5-dimethoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine"  
18G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "5-[(3S)-3-(2,5-dimethoxy-4-phenyl-phenyl)but-1-ynyl]-6-methyl-pyrimidine-2,4-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
18G  "Create component"  2012-11-01  RCSB  
18G  "Initial release"   2014-03-19  RCSB  
18G  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     18G
_pdbx_chem_comp_synonyms.name        "5-[(3S)-3-(2,5-dimethoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
