data_XXF
# 
_chem_comp.id                                    XXF 
_chem_comp.name                                  "(3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H23 Cl N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-14 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.911 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XXF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FH4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XXF N1  N1  N  0 1 Y N N 42.629 -13.121 -74.449 0.361  3.360  0.583  N1  XXF 1  
XXF C7  C1  C  0 1 N N N 42.169 -10.990 -70.852 -2.966 0.885  0.233  C7  XXF 2  
XXF C8  C2  C  0 1 N N N 42.480 -11.545 -72.239 -1.818 1.897  0.210  C8  XXF 3  
XXF N2  N2  N  0 1 Y N N 43.127 -15.102 -75.727 2.599  3.816  0.212  N2  XXF 4  
XXF C9  C3  C  0 1 N N N 41.100 -11.834 -70.172 -2.819 -0.082 -0.944 C9  XXF 5  
XXF O1  O1  O  0 1 N N N 43.363 -11.032 -70.036 -2.929 0.153  1.460  O1  XXF 6  
XXF C1  C4  C  0 1 Y N N 42.683 -13.855 -75.566 1.379  4.200  0.521  C1  XXF 7  
XXF C5  C5  C  0 1 N N N 44.385 -12.804 -71.413 -0.540 0.448  1.667  C5  XXF 8  
XXF C6  C6  C  0 1 N N N 44.102 -12.274 -70.026 -1.701 -0.550 1.673  C6  XXF 9  
XXF N3  N3  N  0 1 N N N 43.142 -12.849 -72.194 -0.543 1.188  0.397  N3  XXF 10 
XXF C4  C7  C  0 1 Y N N 43.076 -13.701 -73.316 0.526  2.065  0.332  C4  XXF 11 
XXF C3  C8  C  0 1 Y N N 43.531 -15.055 -73.320 1.808  1.609  -0.002 C3  XXF 12 
XXF C2  C9  C  0 1 Y N N 43.546 -15.660 -74.584 2.862  2.537  -0.056 C2  XXF 13 
XXF N4  N4  N  0 1 N N N 40.246 -9.851  -68.941 -5.256 -0.299 -1.064 N4  XXF 14 
XXF CL1 CL1 CL 0 0 N N N 44.757 -18.767 -72.759 4.867  -0.699 -1.004 CL1 XXF 15 
XXF N5  N5  N  0 1 Y N N 44.017 -16.934 -74.448 3.996  1.850  -0.400 N5  XXF 16 
XXF N6  N6  N  0 1 N N N 46.638 -17.778 -67.362 1.875  -5.117 2.054  N6  XXF 17 
XXF C10 C10 C  0 1 N N N 40.747 -11.253 -68.809 -4.001 -1.054 -0.950 C10 XXF 18 
XXF C11 C11 C  0 1 N N N 41.291 -8.978  -69.564 -5.441 0.602  0.081  C11 XXF 19 
XXF C12 C12 C  0 1 N N N 41.733 -9.531  -70.919 -4.301 1.623  0.118  C12 XXF 20 
XXF C13 C13 C  0 1 N N N 39.782 -9.310  -67.631 -6.403 -1.204 -1.212 C13 XXF 21 
XXF C14 C14 C  0 1 Y N N 43.976 -16.077 -72.374 2.393  0.305  -0.339 C14 XXF 22 
XXF C15 C15 C  0 1 Y N N 44.269 -17.179 -73.130 3.714  0.522  -0.567 C15 XXF 23 
XXF C16 C16 C  0 1 Y N N 43.902 -16.010 -70.888 1.682  -0.993 -0.415 C16 XXF 24 
XXF C17 C17 C  0 1 Y N N 44.942 -16.517 -70.114 1.990  -2.011 0.483  C17 XXF 25 
XXF C18 C18 C  0 1 Y N N 44.837 -16.528 -68.725 1.316  -3.229 0.406  C18 XXF 26 
XXF C19 C19 C  0 1 Y N N 43.715 -15.987 -68.102 0.336  -3.419 -0.572 C19 XXF 27 
XXF C20 C20 C  0 1 Y N N 42.686 -15.469 -68.871 0.036  -2.405 -1.459 C20 XXF 28 
XXF C21 C21 C  0 1 Y N N 42.772 -15.488 -70.255 0.697  -1.195 -1.383 C21 XXF 29 
XXF C22 C22 C  0 1 N N N 45.836 -17.214 -67.946 1.628  -4.281 1.325  C22 XXF 30 
XXF H1  H1  H  0 1 N N N 43.138 -10.835 -72.762 -1.809 2.415  -0.749 H1  XXF 31 
XXF H2  H2  H  0 1 N N N 41.537 -11.649 -72.795 -1.954 2.620  1.014  H2  XXF 32 
XXF H3  H3  H  0 1 N N N 40.198 -11.852 -70.802 -2.806 0.481  -1.878 H3  XXF 33 
XXF H4  H4  H  0 1 N N N 41.477 -12.859 -70.042 -1.889 -0.641 -0.842 H4  XXF 34 
XXF H5  H5  H  0 1 N N N 42.317 -13.372 -76.460 1.203  5.244  0.732  H5  XXF 35 
XXF H6  H6  H  0 1 N N N 44.805 -13.818 -71.337 -0.657 1.147  2.496  H6  XXF 36 
XXF H7  H7  H  0 1 N N N 45.108 -12.144 -71.915 0.402  -0.089 1.774  H7  XXF 37 
XXF H8  H8  H  0 1 N N N 43.517 -13.026 -69.476 -1.737 -1.061 2.636  H8  XXF 38 
XXF H9  H9  H  0 1 N N N 45.060 -12.108 -69.512 -1.557 -1.281 0.878  H9  XXF 39 
XXF H11 H11 H  0 1 N N N 44.155 -17.584 -75.195 4.874  2.248  -0.509 H11 XXF 40 
XXF H12 H12 H  0 1 N N N 39.966 -11.873 -68.345 -3.908 -1.734 -1.796 H12 XXF 41 
XXF H13 H13 H  0 1 N N N 41.644 -11.257 -68.173 -4.005 -1.626 -0.022 H13 XXF 42 
XXF H14 H14 H  0 1 N N N 42.163 -8.927  -68.895 -6.393 1.123  -0.017 H14 XXF 43 
XXF H15 H15 H  0 1 N N N 40.878 -7.968  -69.705 -5.438 0.021  1.004  H15 XXF 44 
XXF H16 H16 H  0 1 N N N 42.578 -8.929  -71.285 -4.430 2.280  0.978  H16 XXF 45 
XXF H17 H17 H  0 1 N N N 40.892 -9.448  -71.623 -4.313 2.214  -0.798 H17 XXF 46 
XXF H18 H18 H  0 1 N N N 39.017 -9.978  -67.208 -6.466 -1.857 -0.342 H18 XXF 47 
XXF H19 H19 H  0 1 N N N 40.635 -9.244  -66.939 -7.319 -0.619 -1.294 H19 XXF 48 
XXF H20 H20 H  0 1 N N N 39.352 -8.309  -67.780 -6.275 -1.808 -2.111 H20 XXF 49 
XXF H21 H21 H  0 1 N N N 45.831 -16.902 -70.591 2.749  -1.858 1.237  H21 XXF 50 
XXF H22 H22 H  0 1 N N N 43.648 -15.971 -67.024 -0.187 -4.362 -0.634 H22 XXF 51 
XXF H23 H23 H  0 1 N N N 41.814 -15.049 -68.391 -0.722 -2.557 -2.213 H23 XXF 52 
XXF H24 H24 H  0 1 N N N 41.959 -15.096 -70.848 0.454  -0.404 -2.077 H24 XXF 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XXF N2  C1  DOUB Y N 1  
XXF N2  C2  SING Y N 2  
XXF C1  N1  SING Y N 3  
XXF C2  N5  SING Y N 4  
XXF C2  C3  DOUB Y N 5  
XXF N1  C4  DOUB Y N 6  
XXF N5  C15 SING Y N 7  
XXF C3  C4  SING Y N 8  
XXF C3  C14 SING Y N 9  
XXF C4  N3  SING N N 10 
XXF C15 CL1 SING N N 11 
XXF C15 C14 DOUB Y N 12 
XXF C14 C16 SING N N 13 
XXF C8  N3  SING N N 14 
XXF C8  C7  SING N N 15 
XXF N3  C5  SING N N 16 
XXF C5  C6  SING N N 17 
XXF C12 C7  SING N N 18 
XXF C12 C11 SING N N 19 
XXF C16 C21 DOUB Y N 20 
XXF C16 C17 SING Y N 21 
XXF C7  C9  SING N N 22 
XXF C7  O1  SING N N 23 
XXF C21 C20 SING Y N 24 
XXF C9  C10 SING N N 25 
XXF C17 C18 DOUB Y N 26 
XXF O1  C6  SING N N 27 
XXF C11 N4  SING N N 28 
XXF N4  C10 SING N N 29 
XXF N4  C13 SING N N 30 
XXF C20 C19 DOUB Y N 31 
XXF C18 C19 SING Y N 32 
XXF C18 C22 SING N N 33 
XXF C22 N6  TRIP N N 34 
XXF C8  H1  SING N N 35 
XXF C8  H2  SING N N 36 
XXF C9  H3  SING N N 37 
XXF C9  H4  SING N N 38 
XXF C1  H5  SING N N 39 
XXF C5  H6  SING N N 40 
XXF C5  H7  SING N N 41 
XXF C6  H8  SING N N 42 
XXF C6  H9  SING N N 43 
XXF N5  H11 SING N N 44 
XXF C10 H12 SING N N 45 
XXF C10 H13 SING N N 46 
XXF C11 H14 SING N N 47 
XXF C11 H15 SING N N 48 
XXF C12 H16 SING N N 49 
XXF C12 H17 SING N N 50 
XXF C13 H18 SING N N 51 
XXF C13 H19 SING N N 52 
XXF C13 H20 SING N N 53 
XXF C17 H21 SING N N 54 
XXF C19 H22 SING N N 55 
XXF C20 H23 SING N N 56 
XXF C21 H24 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XXF SMILES           ACDLabs              12.01 "N#Cc1cccc(c1)c1c2c([NH]c1Cl)ncnc2N1CC2(CCN(C)CC2)OCC1"                                                                                                        
XXF InChI            InChI                1.06  "InChI=1S/C22H23ClN6O/c1-28-7-5-22(6-8-28)13-29(9-10-30-22)21-18-17(16-4-2-3-15(11-16)12-24)19(23)27-20(18)25-14-26-21/h2-4,11,14H,5-10,13H2,1H3,(H,25,26,27)" 
XXF InChIKey         InChI                1.06  ZNRKSAWCBMXCBN-UHFFFAOYSA-N                                                                                                                                    
XXF SMILES_CANONICAL CACTVS               3.385 "CN1CCC2(CC1)CN(CCO2)c3ncnc4[nH]c(Cl)c(c5cccc(c5)C#N)c34"                                                                                                      
XXF SMILES           CACTVS               3.385 "CN1CCC2(CC1)CN(CCO2)c3ncnc4[nH]c(Cl)c(c5cccc(c5)C#N)c34"                                                                                                      
XXF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)CN(CCO2)c3c4c(c([nH]c4ncn3)Cl)c5cccc(c5)C#N"                                                                                                      
XXF SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)CN(CCO2)c3c4c(c([nH]c4ncn3)Cl)c5cccc(c5)C#N"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XXF "SYSTEMATIC NAME" ACDLabs              12.01 "(3P)-3-[6-chloro-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7H-pyrrolo[2,3-d]pyrimidin-5-yl]benzonitrile"         
XXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[6-chloranyl-4-(9-methyl-1-oxa-4,9-diazaspiro[5.5]undecan-4-yl)-7~{H}-pyrrolo[2,3-d]pyrimidin-5-yl]benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XXF "Create component" 2022-12-14 RCSB 
XXF "Initial release"  2023-04-05 RCSB 
# 
