data_NYF
# 
_chem_comp.id                                    NYF 
_chem_comp.name                                  "N-(2-oxo-2-{[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]amino}ethyl)pyridine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H37 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-13 
_chem_comp.pdbx_modified_date                    2022-07-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        595.754 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NYF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UFF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NYF C13 C1  C 0 1 N N N 169.602 -14.906 9.348  2.449   2.409  -0.887 C13 NYF 1  
NYF C11 C2  C 0 1 N N N 173.353 -10.978 7.847  -3.664  0.219  0.405  C11 NYF 2  
NYF C17 C3  C 0 1 Y N N 168.666 -18.596 9.775  6.202   2.720  -1.150 C17 NYF 3  
NYF C16 C4  C 0 1 Y N N 169.358 -19.185 8.713  6.507   3.383  0.024  C16 NYF 4  
NYF C15 C5  C 0 1 Y N N 170.129 -18.390 7.855  5.499   3.731  0.903  C15 NYF 5  
NYF C14 C6  C 0 1 Y N N 169.514 -16.418 9.123  3.881   2.753  -0.566 C14 NYF 6  
NYF C24 C7  C 0 1 Y N N 176.141 -15.664 12.337 -5.991  3.861  -0.647 C24 NYF 7  
NYF C23 C8  C 0 1 Y N N 175.654 -14.421 11.927 -4.637  3.868  -0.369 C23 NYF 8  
NYF C22 C9  C 0 1 Y N N 176.384 -14.866 9.664  -5.024  2.494  1.553  C22 NYF 9  
NYF C25 C10 C 0 1 Y N N 176.754 -16.514 11.408 -6.863  3.176  0.179  C25 NYF 10 
NYF C20 C11 C 0 1 N N N 175.246 -12.635 10.181 -2.676  3.185  1.030  C20 NYF 11 
NYF C19 C12 C 0 1 Y N N 170.208 -17.007 8.060  4.186   3.416  0.608  C19 NYF 12 
NYF C01 C13 C 0 1 N N N 173.374 -19.654 12.321 7.081   -2.606 -0.768 C01 NYF 13 
NYF C02 C14 C 0 1 N N N 172.670 -18.666 11.381 6.259   -1.461 -0.173 C02 NYF 14 
NYF C03 C15 C 0 1 N N N 173.088 -17.216 11.683 4.905   -1.384 -0.881 C03 NYF 15 
NYF C05 C16 C 0 1 N N N 171.547 -15.461 10.803 2.881   -0.030 -0.782 C05 NYF 16 
NYF C06 C17 C 0 1 N N R 171.052 -14.529 9.685  2.071   1.097  -0.196 C06 NYF 17 
NYF C08 C18 C 0 1 N N N 172.844 -12.765 11.024 -0.496  2.079  0.518  C08 NYF 18 
NYF C09 C19 C 0 1 N N S 173.762 -12.600 9.803  -2.011  2.006  0.317  C09 NYF 19 
NYF C18 C20 C 0 1 Y N N 168.747 -17.213 9.982  4.889   2.404  -1.445 C18 NYF 20 
NYF C21 C21 C 0 1 Y N N 175.770 -14.023 10.595 -4.153  3.184  0.730  C21 NYF 21 
NYF C26 C22 C 0 1 Y N N 176.875 -16.113 10.071 -6.379  2.493  1.279  C26 NYF 22 
NYF C28 C23 C 0 1 Y N N 174.846 -19.822 11.910 8.415   -2.682 -0.071 C28 NYF 23 
NYF C30 C24 C 0 1 Y N N 175.833 -20.064 12.873 8.572   -3.466 1.056  C30 NYF 24 
NYF C31 C25 C 0 1 Y N N 175.208 -19.725 10.562 9.502   -1.970 -0.555 C31 NYF 25 
NYF C32 C26 C 0 1 Y N N 176.557 -19.879 10.228 10.709  -2.069 0.119  C32 NYF 26 
NYF C33 C27 C 0 1 Y N N 177.489 -20.123 11.244 10.789  -2.870 1.243  C33 NYF 27 
NYF C34 C28 C 0 1 N N N 173.025 -9.545  7.391  -4.186  -1.074 0.978  C34 NYF 28 
NYF C36 C29 C 0 1 N N N 173.488 -8.182  5.291  -6.087  -2.564 0.656  C36 NYF 29 
NYF C37 C30 C 0 1 Y N N 174.428 -7.868  4.131  -7.348  -2.930 -0.022 C37 NYF 30 
NYF C39 C31 C 0 1 Y N N 173.947 -7.714  2.827  -8.037  -4.095 0.337  C39 NYF 31 
NYF C40 C32 C 0 1 Y N N 174.875 -7.423  1.820  -9.216  -4.390 -0.325 C40 NYF 32 
NYF C41 C33 C 0 1 Y N N 176.230 -7.301  2.152  -9.672  -3.533 -1.311 C41 NYF 33 
NYF C43 C34 C 0 1 Y N N 175.792 -7.740  4.392  -7.875  -2.118 -1.028 C43 NYF 34 
NYF N04 N1  N 0 1 N N N 172.676 -16.359 10.568 4.117   -0.288 -0.311 N04 NYF 35 
NYF N10 N2  N 0 1 N N N 173.464 -11.263 9.282  -2.518  0.750  0.874  N10 NYF 36 
NYF N29 N3  N 0 1 Y N N 177.120 -20.209 12.531 9.736   -3.537 1.672  N29 NYF 37 
NYF N35 N4  N 0 1 N N N 173.892 -9.209  6.259  -5.435  -1.437 0.306  N35 NYF 38 
NYF N42 N5  N 0 1 Y N N 176.655 -7.461  3.410  -9.001  -2.442 -1.628 N42 NYF 39 
NYF O12 O1  O 0 1 N N N 171.013 -15.459 11.888 2.421   -0.706 -1.678 O12 NYF 40 
NYF O27 O2  O 0 1 N N N 173.532 -11.853 7.031  -4.276  0.781  -0.478 O27 NYF 41 
NYF O38 O3  O 0 1 N N N 172.449 -7.578  5.403  -5.637  -3.279 1.531  O38 NYF 42 
NYF S07 S1  S 0 1 N N N 171.187 -12.828 10.298 0.305   0.768  -0.447 S07 NYF 43 
NYF H1  H1  H 0 1 N N N 169.288 -14.379 8.435  1.796   3.207  -0.534 H1  NYF 44 
NYF H2  H2  H 0 1 N N N 168.944 -14.619 10.182 2.336   2.298  -1.965 H2  NYF 45 
NYF H3  H3  H 0 1 N N N 168.069 -19.207 10.436 6.990   2.451  -1.839 H3  NYF 46 
NYF H4  H4  H 0 1 N N N 169.298 -20.252 8.554  7.533   3.629  0.254  H4  NYF 47 
NYF H5  H5  H 0 1 N N N 170.663 -18.845 7.034  5.737   4.249  1.820  H5  NYF 48 
NYF H6  H6  H 0 1 N N N 176.045 -15.969 13.369 -6.368  4.395  -1.507 H6  NYF 49 
NYF H7  H7  H 0 1 N N N 175.185 -13.764 12.645 -3.956  4.406  -1.012 H7  NYF 50 
NYF H8  H8  H 0 1 N N N 176.479 -14.557 8.634  -4.647  1.960  2.412  H8  NYF 51 
NYF H9  H9  H 0 1 N N N 177.132 -17.476 11.721 -7.921  3.175  -0.035 H9  NYF 52 
NYF H10 H10 H 0 1 N N N 175.829 -12.293 9.313  -2.523  3.093  2.105  H10 NYF 53 
NYF H11 H11 H 0 1 N N N 175.402 -11.944 11.023 -2.236  4.118  0.678  H11 NYF 54 
NYF H12 H12 H 0 1 N N N 170.804 -16.396 7.399  3.398   3.688  1.295  H12 NYF 55 
NYF H13 H13 H 0 1 N N N 173.326 -19.272 13.351 6.546   -3.546 -0.632 H13 NYF 56 
NYF H14 H14 H 0 1 N N N 172.868 -20.629 12.268 7.237   -2.427 -1.832 H14 NYF 57 
NYF H15 H15 H 0 1 N N N 171.582 -18.760 11.511 6.103   -1.640 0.891  H15 NYF 58 
NYF H16 H16 H 0 1 N N N 172.937 -18.907 10.342 6.794   -0.521 -0.309 H16 NYF 59 
NYF H17 H17 H 0 1 N N N 174.180 -17.165 11.804 5.060   -1.205 -1.945 H17 NYF 60 
NYF H18 H18 H 0 1 N N N 172.600 -16.877 12.609 4.370   -2.324 -0.745 H18 NYF 61 
NYF H19 H19 H 0 1 N N N 171.694 -14.612 8.795  2.278   1.176  0.871  H19 NYF 62 
NYF H20 H20 H 0 1 N N N 173.072 -13.695 11.565 -0.131  3.050  0.184  H20 NYF 63 
NYF H21 H21 H 0 1 N N N 172.942 -11.909 11.708 -0.262  1.946  1.574  H21 NYF 64 
NYF H22 H22 H 0 1 N N N 173.542 -13.376 9.055  -2.239  2.050  -0.748 H22 NYF 65 
NYF H23 H23 H 0 1 N N N 168.216 -16.759 10.806 4.650   1.890  -2.364 H23 NYF 66 
NYF H24 H24 H 0 1 N N N 177.348 -16.767 9.353  -7.060  1.954  1.921  H24 NYF 67 
NYF H25 H25 H 0 1 N N N 175.551 -20.135 13.913 7.732   -4.028 1.437  H25 NYF 68 
NYF H26 H26 H 0 1 N N N 174.466 -19.536 9.800  9.410   -1.352 -1.436 H26 NYF 69 
NYF H27 H27 H 0 1 N N N 176.876 -19.811 9.199  11.577  -1.529 -0.231 H27 NYF 70 
NYF H28 H28 H 0 1 N N N 178.530 -20.245 10.985 11.726  -2.953 1.773  H28 NYF 71 
NYF H29 H29 H 0 1 N N N 173.205 -8.842  8.218  -3.449  -1.862 0.826  H29 NYF 72 
NYF H30 H30 H 0 1 N N N 171.971 -9.486  7.082  -4.370  -0.950 2.045  H30 NYF 73 
NYF H31 H31 H 0 1 N N N 172.895 -7.816  2.604  -7.658  -4.746 1.110  H31 NYF 74 
NYF H32 H32 H 0 1 N N N 174.549 -7.294  0.798  -9.774  -5.280 -0.075 H32 NYF 75 
NYF H33 H33 H 0 1 N N N 176.946 -7.073  1.377  -10.591 -3.761 -1.829 H33 NYF 76 
NYF H34 H34 H 0 1 N N N 176.156 -7.868  5.401  -7.356  -1.215 -1.313 H34 NYF 77 
NYF H35 H35 H 0 1 N N N 173.146 -16.387 9.686  4.486   0.252  0.405  H35 NYF 78 
NYF H36 H36 H 0 1 N N N 173.331 -10.514 9.931  -2.028  0.300  1.580  H36 NYF 79 
NYF H37 H37 H 0 1 N N N 174.765 -9.683  6.145  -5.794  -0.867 -0.392 H37 NYF 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NYF C40 C41 DOUB Y N 1  
NYF C40 C39 SING Y N 2  
NYF C41 N42 SING Y N 3  
NYF C39 C37 DOUB Y N 4  
NYF N42 C43 DOUB Y N 5  
NYF C37 C43 SING Y N 6  
NYF C37 C36 SING N N 7  
NYF C36 O38 DOUB N N 8  
NYF C36 N35 SING N N 9  
NYF N35 C34 SING N N 10 
NYF O27 C11 DOUB N N 11 
NYF C34 C11 SING N N 12 
NYF C11 N10 SING N N 13 
NYF C15 C19 DOUB Y N 14 
NYF C15 C16 SING Y N 15 
NYF C19 C14 SING Y N 16 
NYF C16 C17 DOUB Y N 17 
NYF C14 C13 SING N N 18 
NYF C14 C18 DOUB Y N 19 
NYF N10 C09 SING N N 20 
NYF C13 C06 SING N N 21 
NYF C22 C26 DOUB Y N 22 
NYF C22 C21 SING Y N 23 
NYF C06 S07 SING N N 24 
NYF C06 C05 SING N N 25 
NYF C17 C18 SING Y N 26 
NYF C09 C20 SING N N 27 
NYF C09 C08 SING N N 28 
NYF C26 C25 SING Y N 29 
NYF C20 C21 SING N N 30 
NYF C32 C31 DOUB Y N 31 
NYF C32 C33 SING Y N 32 
NYF S07 C08 SING N N 33 
NYF C31 C28 SING Y N 34 
NYF N04 C05 SING N N 35 
NYF N04 C03 SING N N 36 
NYF C21 C23 DOUB Y N 37 
NYF C05 O12 DOUB N N 38 
NYF C33 N29 DOUB Y N 39 
NYF C02 C03 SING N N 40 
NYF C02 C01 SING N N 41 
NYF C25 C24 DOUB Y N 42 
NYF C28 C01 SING N N 43 
NYF C28 C30 DOUB Y N 44 
NYF C23 C24 SING Y N 45 
NYF N29 C30 SING Y N 46 
NYF C13 H1  SING N N 47 
NYF C13 H2  SING N N 48 
NYF C17 H3  SING N N 49 
NYF C16 H4  SING N N 50 
NYF C15 H5  SING N N 51 
NYF C24 H6  SING N N 52 
NYF C23 H7  SING N N 53 
NYF C22 H8  SING N N 54 
NYF C25 H9  SING N N 55 
NYF C20 H10 SING N N 56 
NYF C20 H11 SING N N 57 
NYF C19 H12 SING N N 58 
NYF C01 H13 SING N N 59 
NYF C01 H14 SING N N 60 
NYF C02 H15 SING N N 61 
NYF C02 H16 SING N N 62 
NYF C03 H17 SING N N 63 
NYF C03 H18 SING N N 64 
NYF C06 H19 SING N N 65 
NYF C08 H20 SING N N 66 
NYF C08 H21 SING N N 67 
NYF C09 H22 SING N N 68 
NYF C18 H23 SING N N 69 
NYF C26 H24 SING N N 70 
NYF C30 H25 SING N N 71 
NYF C31 H26 SING N N 72 
NYF C32 H27 SING N N 73 
NYF C33 H28 SING N N 74 
NYF C34 H29 SING N N 75 
NYF C34 H30 SING N N 76 
NYF C39 H31 SING N N 77 
NYF C40 H32 SING N N 78 
NYF C41 H33 SING N N 79 
NYF C43 H34 SING N N 80 
NYF N04 H35 SING N N 81 
NYF N10 H36 SING N N 82 
NYF N35 H37 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NYF SMILES           ACDLabs              12.01 "O=C(NCC(=O)NC(Cc1ccccc1)CSC(Cc1ccccc1)C(=O)NCCCc1cccnc1)c1cccnc1"                                                                                                                                                                                     
NYF InChI            InChI                1.03  "InChI=1S/C34H37N5O3S/c40-32(24-38-33(41)29-16-9-18-36-23-29)39-30(20-26-10-3-1-4-11-26)25-43-31(21-27-12-5-2-6-13-27)34(42)37-19-8-15-28-14-7-17-35-22-28/h1-7,9-14,16-18,22-23,30-31H,8,15,19-21,24-25H2,(H,37,42)(H,38,41)(H,39,40)/t30-,31+/m0/s1" 
NYF InChIKey         InChI                1.03  LKJAHHMUSXXSAP-IOWSJCHKSA-N                                                                                                                                                                                                                            
NYF SMILES_CANONICAL CACTVS               3.385 "O=C(CNC(=O)c1cccnc1)N[C@H](CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3)Cc4ccccc4"                                                                                                                                                                             
NYF SMILES           CACTVS               3.385 "O=C(CNC(=O)c1cccnc1)N[CH](CS[CH](Cc2ccccc2)C(=O)NCCCc3cccnc3)Cc4ccccc4"                                                                                                                                                                               
NYF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](CS[C@H](Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)c4cccnc4"                                                                                                                                                                          
NYF SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(CSC(Cc2ccccc2)C(=O)NCCCc3cccnc3)NC(=O)CNC(=O)c4cccnc4"                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NYF "SYSTEMATIC NAME" ACDLabs              12.01 "N-(2-oxo-2-{[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]amino}ethyl)pyridine-3-carboxamide"                         
NYF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-oxidanylidene-2-[[(2~{S})-1-[(2~{R})-1-oxidanylidene-3-phenyl-1-(3-pyridin-3-ylpropylamino)propan-2-yl]sulfanyl-3-phenyl-propan-2-yl]amino]ethyl]pyridine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NYF "Create component" 2022-04-13 RCSB 
NYF "Initial release"  2022-07-27 RCSB 
# 
