data_A1AAF
# 
_chem_comp.id                                    A1AAF 
_chem_comp.name                                  "methyl (1S,2R,3S,4R,5R)-4-{2-[(5-chlorothiophen-2-yl)ethynyl]-6-(methylamino)-9H-purin-9-yl}-2,3-dihydroxybicyclo[3.1.0]hexane-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H18 Cl N5 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-13 
_chem_comp.pdbx_modified_date                    2024-08-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.906 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AAF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8VBY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AAF C1  C1  C  0 1 N N N N N N 77.227 88.561 98.328  1.772  5.452  -0.132 C1  A1AAF 1  
A1AAF O1  O1  O  0 1 N N N N N N 83.780 94.427 94.940  -2.900 -0.829 2.655  O1  A1AAF 2  
A1AAF C2  C2  C  0 1 Y N N N N N 79.097 90.093 97.917  0.385  3.415  -0.009 C2  A1AAF 3  
A1AAF C13 C3  C  0 1 N N R N N N 82.570 93.262 96.743  -2.744 -0.352 0.256  C13 A1AAF 4  
A1AAF C3  C4  C  0 1 Y N N N N N 79.647 91.238 97.312  -0.863 2.770  0.070  C3  A1AAF 5  
A1AAF C4  C5  C  0 1 Y N N N N N 80.089 93.042 96.250  -2.942 2.163  0.185  C4  A1AAF 6  
A1AAF C5  C6  C  0 1 Y N N N N N 80.996 91.472 97.507  -0.888 1.364  0.115  C5  A1AAF 7  
A1AAF C6  C7  C  0 1 Y N N N N N 81.222 89.658 98.747  1.416  1.342  0.008  C6  A1AAF 8  
A1AAF C7  C8  C  0 1 N N N N N N 82.029 88.782 99.527  2.631  0.585  -0.024 C7  A1AAF 9  
A1AAF C8  C9  C  0 1 N N N N N N 82.702 88.035 100.184 3.628  -0.036 -0.051 C8  A1AAF 10 
A1AAF C9  C10 C  0 1 Y N N N N N 83.488 87.143 100.968 4.843  -0.793 -0.083 C9  A1AAF 11 
A1AAF C10 C11 C  0 1 Y N N N N N 84.843 87.270 101.188 4.926  -2.155 -0.044 C10 A1AAF 12 
A1AAF C11 C12 C  0 1 Y N N N N N 85.356 86.223 102.012 6.209  -2.648 -0.088 C11 A1AAF 13 
A1AAF C12 C13 C  0 1 Y N N N N N 84.362 85.355 102.375 7.174  -1.721 -0.162 C12 A1AAF 14 
A1AAF C14 C14 C  0 1 N N S N N N 83.034 93.897 98.032  -3.670 -0.631 -0.946 C14 A1AAF 15 
A1AAF C15 C15 C  0 1 N N N N N N 84.288 94.730 98.112  -3.830 -2.079 -1.415 C15 A1AAF 16 
A1AAF C16 C16 C  0 1 N N S N N N 82.936 95.398 97.919  -4.831 -1.492 -0.417 C16 A1AAF 17 
A1AAF C17 C17 C  0 1 N N R N N N 82.442 95.714 96.525  -4.569 -1.706 1.089  C17 A1AAF 18 
A1AAF C18 C18 C  0 1 N N S N N N 82.556 94.405 95.702  -3.665 -0.514 1.490  C18 A1AAF 19 
A1AAF C19 C19 C  0 1 N N N N N N 82.324 96.145 99.045  -6.252 -1.246 -0.855 C19 A1AAF 20 
A1AAF C20 C20 C  0 1 N N N N N N 82.956 96.701 101.217 -8.587 -1.719 -0.841 C20 A1AAF 21 
A1AAF N1  N1  N  0 1 Y N N N N N 79.093 92.226 96.526  -2.149 3.193  0.116  N1  A1AAF 22 
A1AAF N2  N2  N  0 1 N N N N N N 77.764 89.776 97.781  0.465  4.796  -0.051 N2  A1AAF 23 
A1AAF N3  N3  N  0 1 Y N N N N N 81.261 92.630 96.819  -2.212 1.011  0.188  N3  A1AAF 24 
A1AAF N4  N4  N  0 1 Y N N N N N 81.857 90.725 98.215  0.257  0.695  0.083  N4  A1AAF 25 
A1AAF N5  N5  N  0 1 Y N N N N N 79.926 89.304 98.644  1.484  2.672  -0.037 N5  A1AAF 26 
A1AAF O2  O2  O  0 1 N N N N N N 83.227 96.744 95.945  -3.891 -2.944 1.307  O2  A1AAF 27 
A1AAF O3  O3  O  0 1 N N N N N N 81.113 96.163 99.206  -6.498 -0.358 -1.637 O3  A1AAF 28 
A1AAF O4  O4  O  0 1 N N N N N N 83.252 96.753 99.822  -7.244 -2.013 -0.376 O4  A1AAF 29 
A1AAF S1  S1  S  0 1 Y N N N N N 82.845 85.766 101.753 6.462  -0.114 -0.187 S1  A1AAF 30 
A1AAF CL1 CL1 CL 0 0 N N N N N N 84.527 83.959 103.358 8.876  -2.058 -0.229 CL1 A1AAF 31 
A1AAF H1  H1  H  0 1 N N N N N N 76.151 88.504 98.108  1.636  6.533  -0.155 H1  A1AAF 32 
A1AAF H3  H2  H  0 1 N N N N N N 77.740 87.698 97.878  2.371  5.179  0.737  H3  A1AAF 33 
A1AAF H2  H3  H  0 1 N N N N N N 77.380 88.550 99.417  2.284  5.131  -1.040 H2  A1AAF 34 
A1AAF H14 H4  H  0 1 N N N N N N 83.748 95.136 94.309  -3.431 -0.941 3.456  H14 A1AAF 35 
A1AAF H8  H5  H  0 1 N N N N N N 83.317 92.519 96.428  -1.932 -1.078 0.288  H8  A1AAF 36 
A1AAF H5  H6  H  0 1 N N N N N N 79.991 93.932 95.645  -4.020 2.214  0.234  H5  A1AAF 37 
A1AAF H6  H7  H  0 1 N N N N N N 85.447 88.069 100.784 4.056  -2.793 0.017  H6  A1AAF 38 
A1AAF H7  H8  H  0 1 N N N N N N 86.390 86.129 102.309 6.424  -3.706 -0.064 H7  A1AAF 39 
A1AAF H9  H9  H  0 1 N N N N N N 82.676 93.443 98.968  -3.844 0.187  -1.646 H9  A1AAF 40 
A1AAF H10 H10 H  0 1 N N N N N N 84.821 94.832 99.069  -4.176 -2.241 -2.436 H10 A1AAF 41 
A1AAF H11 H11 H  0 1 N N N N N N 85.015 94.711 97.287  -3.116 -2.811 -1.039 H11 A1AAF 42 
A1AAF H12 H12 H  0 1 N N N N N N 81.384 96.012 96.573  -5.506 -1.681 1.645  H12 A1AAF 43 
A1AAF H13 H13 H  0 1 N N N N N N 81.679 94.301 95.046  -4.260 0.386  1.649  H13 A1AAF 44 
A1AAF H18 H14 H  0 1 N N N N N N 83.750 97.213 101.780 -9.291 -2.411 -0.378 H18 A1AAF 45 
A1AAF H16 H15 H  0 1 N N N N N N 81.994 97.199 101.406 -8.850 -0.697 -0.570 H16 A1AAF 46 
A1AAF H17 H16 H  0 1 N N N N N N 82.896 95.651 101.540 -8.629 -1.829 -1.925 H17 A1AAF 47 
A1AAF H4  H17 H  0 1 N N N N N N 77.578 89.751 96.799  -0.345 5.329  -0.025 H4  A1AAF 48 
A1AAF H15 H18 H  0 1 N N N N N N 82.907 96.933 95.071  -3.701 -3.130 2.237  H15 A1AAF 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AAF N1  C3  SING Y N 1  
A1AAF N1  C4  DOUB Y N 2  
A1AAF C1  N2  SING N N 3  
A1AAF N2  C2  SING N N 4  
A1AAF C2  C3  DOUB Y N 5  
A1AAF C2  N5  SING Y N 6  
A1AAF C3  C5  SING Y N 7  
A1AAF C4  N3  SING Y N 8  
A1AAF N3  C13 SING N N 9  
A1AAF N3  C5  SING Y N 10 
A1AAF C5  N4  DOUB Y N 11 
A1AAF N4  C6  SING Y N 12 
A1AAF C6  C7  SING N N 13 
A1AAF C6  N5  DOUB Y N 14 
A1AAF C7  C8  TRIP N N 15 
A1AAF C8  C9  SING N N 16 
A1AAF C9  C10 DOUB Y N 17 
A1AAF C9  S1  SING Y N 18 
A1AAF C10 C11 SING Y N 19 
A1AAF C11 C12 DOUB Y N 20 
A1AAF C12 CL1 SING N N 21 
A1AAF C12 S1  SING Y N 22 
A1AAF C13 C14 SING N N 23 
A1AAF C13 C18 SING N N 24 
A1AAF C14 C16 SING N N 25 
A1AAF C14 C15 SING N N 26 
A1AAF C15 C16 SING N N 27 
A1AAF C16 C19 SING N N 28 
A1AAF C16 C17 SING N N 29 
A1AAF C17 O2  SING N N 30 
A1AAF C17 C18 SING N N 31 
A1AAF C18 O1  SING N N 32 
A1AAF C19 O3  DOUB N N 33 
A1AAF C19 O4  SING N N 34 
A1AAF O4  C20 SING N N 35 
A1AAF C1  H1  SING N N 36 
A1AAF C1  H3  SING N N 37 
A1AAF C1  H2  SING N N 38 
A1AAF O1  H14 SING N N 39 
A1AAF C13 H8  SING N N 40 
A1AAF C4  H5  SING N N 41 
A1AAF C10 H6  SING N N 42 
A1AAF C11 H7  SING N N 43 
A1AAF C14 H9  SING N N 44 
A1AAF C15 H10 SING N N 45 
A1AAF C15 H11 SING N N 46 
A1AAF C17 H12 SING N N 47 
A1AAF C18 H13 SING N N 48 
A1AAF C20 H18 SING N N 49 
A1AAF C20 H16 SING N N 50 
A1AAF C20 H17 SING N N 51 
A1AAF N2  H4  SING N N 52 
A1AAF O2  H15 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AAF SMILES           ACDLabs              12.01 "Clc1ccc(C#Cc2nc(NC)c3ncn(C4C5CC5(C(=O)OC)C(O)C4O)c3n2)s1"                                                                                                                                           
A1AAF InChI            InChI                1.06  "InChI=1S/C20H18ClN5O4S/c1-22-17-13-18(25-12(24-17)6-4-9-3-5-11(21)31-9)26(8-23-13)14-10-7-20(10,19(29)30-2)16(28)15(14)27/h3,5,8,10,14-16,27-28H,7H2,1-2H3,(H,22,24,25)/t10?,14?,15?,16?,20-/m0/s1" 
A1AAF InChIKey         InChI                1.06  OXHKHNQYCDYUIU-LJARFEBYSA-N                                                                                                                                                                          
A1AAF SMILES_CANONICAL CACTVS               3.385 "CNc1nc(nc2n(cnc12)[C@H]3[C@H](O)[C@H](O)[C@@]4(C[C@H]34)C(=O)OC)C#Cc5sc(Cl)cc5"                                                                                                                     
A1AAF SMILES           CACTVS               3.385 "CNc1nc(nc2n(cnc12)[CH]3[CH](O)[CH](O)[C]4(C[CH]34)C(=O)OC)C#Cc5sc(Cl)cc5"                                                                                                                           
A1AAF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)C#Cc3ccc(s3)Cl)n(cn2)[C@@H]4[C@H]5C[C@]5([C@H]([C@H]4O)O)C(=O)OC"                                                                                                                     
A1AAF SMILES           "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)C#Cc3ccc(s3)Cl)n(cn2)C4C5CC5(C(C4O)O)C(=O)OC"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AAF "SYSTEMATIC NAME" ACDLabs              12.01 "methyl (1S,2R,3S,4R,5R)-4-{2-[(5-chlorothiophen-2-yl)ethynyl]-6-(methylamino)-9H-purin-9-yl}-2,3-dihydroxybicyclo[3.1.0]hexane-1-carboxylate"                     
A1AAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (1~{S},2~{R},3~{S},4~{R},5~{S})-4-[2-[2-(5-chloranylthiophen-2-yl)ethynyl]-6-(methylamino)purin-9-yl]-2,3-bis(oxidanyl)bicyclo[3.1.0]hexane-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AAF "Create component" 2023-12-13 RCSB 
A1AAF "Initial release"  2024-08-07 RCSB 
# 
