data_1TF
# 
_chem_comp.id                                    1TF 
_chem_comp.name                                  "palmitoyl adenylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H44 N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-06-25 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        585.630 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1TF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7R7G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1TF C15 C1  C 0 1 N N N -25.542 29.924 18.408 -1.693  -0.578 -0.445 C15 1TF 1  
1TF C17 C2  C 0 1 N N N -25.327 29.710 20.897 -4.169  -0.245 -0.457 C17 1TF 2  
1TF C20 C3  C 0 1 N N N -25.636 27.340 23.011 -7.956  -0.257 0.243  C20 1TF 3  
1TF C21 C4  C 0 1 N N N -24.829 26.355 23.840 -9.122  0.422  -0.479 C21 1TF 4  
1TF C22 C5  C 0 1 N N N -25.693 25.241 24.408 -10.432 0.076  0.231  C22 1TF 5  
1TF C24 C6  C 0 1 N N N -24.881 22.853 24.309 -12.908 0.410  0.220  C24 1TF 6  
1TF C26 C7  C 0 1 N N N -24.915 20.380 24.917 -15.384 0.743  0.209  C26 1TF 7  
1TF C28 C8  C 0 1 N N N -25.439 18.343 26.328 -17.860 1.077  0.198  C28 1TF 8  
1TF C02 C9  C 0 1 Y N N -28.796 35.178 23.382 9.998   3.717  0.301  C02 1TF 9  
1TF C03 C10 C 0 1 Y N N -28.379 34.777 22.105 8.924   2.819  0.416  C03 1TF 10 
1TF C04 C11 C 0 1 Y N N -28.733 35.555 21.033 8.912   1.689  -0.419 C04 1TF 11 
1TF C06 C12 C 0 1 N N R -28.367 35.495 18.590 7.321   -0.259 -0.709 C06 1TF 12 
1TF C08 C13 C 0 1 N N R -26.772 35.103 16.953 5.631   -1.841 -0.660 C08 1TF 13 
1TF C09 C14 C 0 1 N N N -25.940 33.940 16.474 4.496   -2.251 0.281  C09 1TF 14 
1TF C14 C15 C 0 1 N N N -26.325 30.638 17.325 -0.545  -1.247 0.265  C14 1TF 15 
1TF C16 C16 C 0 1 N N N -26.278 29.970 19.740 -3.003  -0.924 0.265  C16 1TF 16 
1TF C18 C17 C 0 1 N N N -25.988 29.700 22.264 -5.479  -0.590 0.254  C18 1TF 17 
1TF C19 C18 C 0 1 N N N -25.204 28.789 23.194 -6.645  0.089  -0.468 C19 1TF 18 
1TF C23 C19 C 0 1 N N N -25.625 23.964 23.586 -11.598 0.756  -0.490 C23 1TF 19 
1TF C25 C20 C 0 1 N N N -25.663 21.545 24.287 -14.074 1.089  -0.501 C25 1TF 20 
1TF C27 C21 C 0 1 N N N -25.807 19.157 25.093 -16.550 1.422  -0.512 C27 1TF 21 
1TF C29 C22 C 0 1 N N N -25.061 16.904 26.002 -19.026 1.756  -0.523 C29 1TF 22 
1TF C32 C23 C 0 1 N N S -26.135 35.728 17.874 6.925   -2.597 -0.287 C32 1TF 23 
1TF C34 C24 C 0 1 N N R -27.258 36.558 18.447 7.944   -1.474 0.023  C34 1TF 24 
1TF C36 C25 C 0 1 Y N N -27.570 33.880 20.336 7.133   1.689  0.884  C36 1TF 25 
1TF C39 C26 C 0 1 Y N N -29.830 37.001 22.443 10.894  2.381  -1.355 C39 1TF 26 
1TF N01 N1  N 0 1 N N N -28.453 34.407 24.551 10.068  4.844  1.101  N01 1TF 27 
1TF N05 N2  N 0 1 Y N N -28.224 34.962 19.961 7.771   0.996  -0.101 N05 1TF 28 
1TF N37 N3  N 0 1 Y N N -27.660 33.750 21.640 7.811   2.758  1.186  N37 1TF 29 
1TF N38 N4  N 0 1 Y N N -29.458 36.651 21.237 9.908   1.512  -1.281 N38 1TF 30 
1TF N40 N5  N 0 1 Y N N -29.509 36.278 23.496 10.949  3.457  -0.591 N40 1TF 31 
1TF O07 O1  O 0 1 N N N -28.109 34.610 17.705 5.901   -0.436 -0.516 O07 1TF 32 
1TF O10 O2  O 0 1 N N N -26.738 33.153 15.646 3.282   -1.623 -0.135 O10 1TF 33 
1TF O12 O3  O 0 1 N N N -26.933 31.372 13.821 1.576   -3.277 0.716  O12 1TF 34 
1TF O13 O4  O 0 1 N N N -25.908 30.571 15.984 0.709   -1.084 -0.184 O13 1TF 35 
1TF O30 O5  O 0 1 N N N -27.287 31.235 17.651 -0.753  -1.930 1.240  O30 1TF 36 
1TF O31 O6  O 0 1 N N N -24.704 32.234 14.395 1.981   -1.214 2.113  O31 1TF 37 
1TF O33 O7  O 0 1 N N N -25.062 36.571 17.268 7.375   -3.391 -1.386 O33 1TF 38 
1TF O35 O8  O 0 1 N N N -27.648 37.515 17.572 9.230   -1.789 -0.515 O35 1TF 39 
1TF P11 P1  P 0 1 N N N -26.048 31.845 14.935 1.881   -1.831 0.629  P11 1TF 40 
1TF H1  H1  H 0 1 N N N -25.398 28.874 18.114 -1.548  0.502  -0.434 H1  1TF 41 
1TF H2  H2  H 0 1 N N N -24.562 30.411 18.522 -1.736  -0.928 -1.477 H2  1TF 42 
1TF H3  H3  H 0 1 N N N -24.852 28.731 20.738 -4.024  0.835  -0.445 H3  1TF 43 
1TF H4  H4  H 0 1 N N N -24.558 30.496 20.893 -4.212  -0.595 -1.488 H4  1TF 44 
1TF H5  H5  H 0 1 N N N -26.694 27.253 23.300 -7.913  0.093  1.274  H5  1TF 45 
1TF H6  H6  H 0 1 N N N -25.523 27.075 21.949 -8.101  -1.337 0.231  H6  1TF 46 
1TF H7  H7  H 0 1 N N N -24.050 25.910 23.203 -8.976  1.502  -0.468 H7  1TF 47 
1TF H8  H8  H 0 1 N N N -24.356 26.896 24.673 -9.164  0.072  -1.510 H8  1TF 48 
1TF H9  H9  H 0 1 N N N -26.737 25.586 24.436 -10.577 -1.004 0.220  H9  1TF 49 
1TF H10 H10 H 0 1 N N N -25.353 25.019 25.430 -10.389 0.427  1.263  H10 1TF 50 
1TF H11 H11 H 0 1 N N N -23.909 22.696 23.818 -13.053 -0.670 0.209  H11 1TF 51 
1TF H12 H12 H 0 1 N N N -24.719 23.154 25.355 -12.865 0.760  1.252  H12 1TF 52 
1TF H13 H13 H 0 1 N N N -24.067 20.111 24.270 -15.529 -0.337 0.198  H13 1TF 53 
1TF H14 H14 H 0 1 N N N -24.540 20.691 25.903 -15.341 1.094  1.241  H14 1TF 54 
1TF H15 H15 H 0 1 N N N -24.584 18.826 26.824 -18.006 -0.004 0.187  H15 1TF 55 
1TF H16 H16 H 0 1 N N N -26.301 18.333 27.011 -17.817 1.427  1.229  H16 1TF 56 
1TF H17 H17 H 0 1 N N N -29.350 35.972 18.465 7.570   -0.281 -1.770 H17 1TF 57 
1TF H18 H18 H 0 1 N N N -27.059 35.738 16.102 5.358   -2.062 -1.692 H18 1TF 58 
1TF H19 H19 H 0 1 N N N -25.596 33.347 17.335 4.374   -3.334 0.251  H19 1TF 59 
1TF H20 H20 H 0 1 N N N -25.070 34.310 15.912 4.737   -1.940 1.297  H20 1TF 60 
1TF H21 H21 H 0 1 N N N -26.734 30.963 19.865 -3.149  -2.004 0.254  H21 1TF 61 
1TF H22 H22 H 0 1 N N N -27.066 29.202 19.742 -2.961  -0.574 1.296  H22 1TF 62 
1TF H23 H23 H 0 1 N N N -26.000 30.721 22.674 -5.625  -1.671 0.243  H23 1TF 63 
1TF H24 H24 H 0 1 N N N -27.020 29.330 22.171 -5.437  -0.240 1.285  H24 1TF 64 
1TF H25 H25 H 0 1 N N N -24.131 28.878 22.968 -6.688  -0.262 -1.499 H25 1TF 65 
1TF H26 H26 H 0 1 N N N -25.386 29.092 24.236 -6.500  1.169  -0.456 H26 1TF 66 
1TF H27 H27 H 0 1 N N N -25.107 24.179 22.640 -11.452 1.836  -0.479 H27 1TF 67 
1TF H28 H28 H 0 1 N N N -26.650 23.624 23.374 -11.640 0.405  -1.521 H28 1TF 68 
1TF H29 H29 H 0 1 N N N -26.604 21.693 24.837 -13.928 2.169  -0.490 H29 1TF 69 
1TF H30 H30 H 0 1 N N N -25.886 21.290 23.240 -14.116 0.739  -1.533 H30 1TF 70 
1TF H31 H31 H 0 1 N N N -26.851 19.492 25.188 -16.404 2.503  -0.501 H31 1TF 71 
1TF H32 H32 H 0 1 N N N -25.707 18.516 24.205 -16.592 1.072  -1.544 H32 1TF 72 
1TF H33 H33 H 0 1 N N N -24.807 16.372 26.931 -19.068 1.406  -1.555 H33 1TF 73 
1TF H34 H34 H 0 1 N N N -25.910 16.404 25.513 -19.959 1.510  -0.017 H34 1TF 74 
1TF H35 H35 H 0 1 N N N -24.193 16.897 25.327 -18.881 2.836  -0.512 H35 1TF 75 
1TF H36 H36 H 0 1 N N N -25.714 35.072 18.650 6.763   -3.219 0.593  H36 1TF 76 
1TF H37 H37 H 0 1 N N N -26.983 36.958 19.434 8.007   -1.291 1.096  H37 1TF 77 
1TF H38 H38 H 0 1 N N N -27.044 33.207 19.675 6.203   1.395  1.346  H38 1TF 78 
1TF H39 H39 H 0 1 N N N -30.412 37.901 22.577 11.687  2.208  -2.067 H39 1TF 79 
1TF H40 H40 H 0 1 N N N -28.834 34.846 25.364 10.816  5.455  1.014  H40 1TF 80 
1TF H41 H41 H 0 1 N N N -28.829 33.484 24.464 9.368   5.023  1.748  H41 1TF 81 
1TF H42 H42 H 0 1 N N N -24.689 32.100 13.455 2.179   -0.267 2.132  H42 1TF 82 
1TF H43 H43 H 0 1 N N N -24.594 37.031 17.955 8.185   -3.888 -1.207 H43 1TF 83 
1TF H44 H44 H 0 1 N N N -28.354 38.024 17.953 9.622   -2.595 -0.151 H44 1TF 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1TF O12 P11 DOUB N N 1  
1TF O31 P11 SING N N 2  
1TF P11 O10 SING N N 3  
1TF P11 O13 SING N N 4  
1TF O10 C09 SING N N 5  
1TF O13 C14 SING N N 6  
1TF C09 C08 SING N N 7  
1TF C08 O07 SING N N 8  
1TF C08 C32 SING N N 9  
1TF O33 C32 SING N N 10 
1TF C14 O30 DOUB N N 11 
1TF C14 C15 SING N N 12 
1TF O35 C34 SING N N 13 
1TF O07 C06 SING N N 14 
1TF C32 C34 SING N N 15 
1TF C15 C16 SING N N 16 
1TF C34 C06 SING N N 17 
1TF C06 N05 SING N N 18 
1TF C16 C17 SING N N 19 
1TF N05 C36 SING Y N 20 
1TF N05 C04 SING Y N 21 
1TF C36 N37 DOUB Y N 22 
1TF C17 C18 SING N N 23 
1TF C04 N38 DOUB Y N 24 
1TF C04 C03 SING Y N 25 
1TF N38 C39 SING Y N 26 
1TF N37 C03 SING Y N 27 
1TF C03 C02 DOUB Y N 28 
1TF C18 C19 SING N N 29 
1TF C39 N40 DOUB Y N 30 
1TF C20 C19 SING N N 31 
1TF C20 C21 SING N N 32 
1TF C02 N40 SING Y N 33 
1TF C02 N01 SING N N 34 
1TF C23 C24 SING N N 35 
1TF C23 C22 SING N N 36 
1TF C21 C22 SING N N 37 
1TF C25 C24 SING N N 38 
1TF C25 C26 SING N N 39 
1TF C26 C27 SING N N 40 
1TF C27 C28 SING N N 41 
1TF C29 C28 SING N N 42 
1TF C15 H1  SING N N 43 
1TF C15 H2  SING N N 44 
1TF C17 H3  SING N N 45 
1TF C17 H4  SING N N 46 
1TF C20 H5  SING N N 47 
1TF C20 H6  SING N N 48 
1TF C21 H7  SING N N 49 
1TF C21 H8  SING N N 50 
1TF C22 H9  SING N N 51 
1TF C22 H10 SING N N 52 
1TF C24 H11 SING N N 53 
1TF C24 H12 SING N N 54 
1TF C26 H13 SING N N 55 
1TF C26 H14 SING N N 56 
1TF C28 H15 SING N N 57 
1TF C28 H16 SING N N 58 
1TF C06 H17 SING N N 59 
1TF C08 H18 SING N N 60 
1TF C09 H19 SING N N 61 
1TF C09 H20 SING N N 62 
1TF C16 H21 SING N N 63 
1TF C16 H22 SING N N 64 
1TF C18 H23 SING N N 65 
1TF C18 H24 SING N N 66 
1TF C19 H25 SING N N 67 
1TF C19 H26 SING N N 68 
1TF C23 H27 SING N N 69 
1TF C23 H28 SING N N 70 
1TF C25 H29 SING N N 71 
1TF C25 H30 SING N N 72 
1TF C27 H31 SING N N 73 
1TF C27 H32 SING N N 74 
1TF C29 H33 SING N N 75 
1TF C29 H34 SING N N 76 
1TF C29 H35 SING N N 77 
1TF C32 H36 SING N N 78 
1TF C34 H37 SING N N 79 
1TF C36 H38 SING N N 80 
1TF C39 H39 SING N N 81 
1TF N01 H40 SING N N 82 
1TF N01 H41 SING N N 83 
1TF O31 H42 SING N N 84 
1TF O33 H43 SING N N 85 
1TF O35 H44 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1TF SMILES           ACDLabs              12.01 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                                                  
1TF InChI            InChI                1.03  "InChI=1S/C26H44N5O8P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-20(32)39-40(35,36)37-16-19-22(33)23(34)26(38-19)31-18-30-21-24(27)28-17-29-25(21)31/h17-19,22-23,26,33-34H,2-16H2,1H3,(H,35,36)(H2,27,28,29)/t19-,22-,23-,26-/m1/s1" 
1TF InChIKey         InChI                1.03  CMRDSXPYXCUXMI-VJUOEERUSA-N                                                                                                                                                                                                     
1TF SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                                                               
1TF SMILES           CACTVS               3.385 "CCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                                                                    
1TF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                                
1TF SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1TF "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine"                                                                  
1TF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hexadecanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1TF "Create component" 2021-06-25 RCSB 
1TF "Initial release"  2022-07-06 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      1TF 
_pdbx_chem_comp_synonyms.name         "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
