data_Z3E
# 
_chem_comp.id                                    Z3E 
_chem_comp.name                                  O-benzyl-L-threonine 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H15 N O3" 
_chem_comp.mon_nstd_parent_comp_id               THR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-10-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        209.242 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z3E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2Z3E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z3E C    C    C 0 1 N N N Y N Y -17.098 2.099  -22.649 2.558  -1.185 -0.085 C    Z3E 1  
Z3E N    N    N 0 1 N N N Y Y N -17.921 4.334  -21.996 2.746  0.694  -1.615 N    Z3E 2  
Z3E O    O    O 0 1 N N N Y N Y -15.895 1.981  -22.400 2.026  -1.784 -0.989 O    Z3E 3  
Z3E C1   C1   C 0 1 Y N N N N N -17.054 7.862  -24.491 -1.914 0.241  0.503  C1   Z3E 4  
Z3E C2   C2   C 0 1 Y N N N N N -17.892 8.607  -23.639 -2.267 -1.095 0.549  C2   Z3E 5  
Z3E C3   C3   C 0 1 Y N N N N N -18.378 9.865  -24.047 -3.469 -1.510 0.005  C3   Z3E 6  
Z3E C4   C4   C 0 1 Y N N N N N -18.042 10.415 -25.303 -4.316 -0.590 -0.584 C4   Z3E 7  
Z3E C5   C5   C 0 1 Y N N N N N -17.203 9.681  -26.161 -3.963 0.745  -0.628 C5   Z3E 8  
Z3E C6   C6   C 0 1 Y N N N N N -16.718 8.408  -25.757 -2.761 1.161  -0.086 C6   Z3E 9  
Z3E C7   C7   C 0 1 N N N N N N -16.520 6.493  -24.063 -0.607 0.695  1.101  C7   Z3E 10 
Z3E CA   CA   C 0 1 N N S Y N N -17.715 3.444  -23.153 2.791  0.300  -0.200 CA   Z3E 11 
Z3E CB   CB   C 0 1 N N R N N N -16.822 4.128  -24.319 1.704  1.048  0.573  CB   Z3E 12 
Z3E OG1  OG1  O 0 1 N N N N N N -17.288 5.453  -24.677 0.418  0.636  0.107  OG1  Z3E 13 
Z3E CG2  CG2  C 0 1 N N N N N N -16.752 3.236  -25.565 1.867  2.554  0.355  CG2  Z3E 14 
Z3E OXT  OXT  O 0 1 N Y N Y N Y -17.956 0.969  -22.470 2.936  -1.840 1.024  OXT  Z3E 15 
Z3E H2   H2   H 0 1 N Y N Y Y N -18.316 5.199  -22.306 1.849  0.475  -2.022 H2   Z3E 16 
Z3E H    H    H 0 1 N N N Y Y N -18.544 3.897  -21.347 2.963  1.673  -1.724 H    Z3E 17 
Z3E H8   H8   H 0 1 N N N N N N -18.163 8.213  -22.671 -1.605 -1.813 1.008  H8   Z3E 18 
Z3E H3   H3   H 0 1 N N N N N N -19.023 10.422 -23.383 -3.745 -2.554 0.040  H3   Z3E 19 
Z3E H4   H4   H 0 1 N N N N N N -18.422 11.381 -25.600 -5.254 -0.915 -1.009 H4   Z3E 20 
Z3E H5   H5   H 0 1 N N N N N N -16.928 10.084 -27.125 -4.624 1.464  -1.089 H5   Z3E 21 
Z3E H6   H6   H 0 1 N N N N N N -16.082 7.846  -26.425 -2.484 2.204  -0.121 H6   Z3E 22 
Z3E H7   H7   H 0 1 N N N N N N -15.469 6.400  -24.373 -0.708 1.720  1.459  H7   Z3E 23 
Z3E H7A  H7A  H 0 1 N N N N N N -16.592 6.401  -22.969 -0.343 0.043  1.934  H7A  Z3E 24 
Z3E HA   HA   H 0 1 N N N Y N N -18.690 3.244  -23.622 3.768  0.547  0.214  HA   Z3E 25 
Z3E HB   HB   H 0 1 N N N N N N -15.809 4.238  -23.903 1.794  0.824  1.636  HB   Z3E 26 
Z3E HG2  HG2  H 0 1 N N N N N N -16.140 3.728  -26.335 1.777  2.778  -0.708 HG2  Z3E 27 
Z3E HG2A HG2A H 0 0 N N N N N N -16.299 2.270  -25.299 1.093  3.087  0.906  HG2A Z3E 28 
Z3E HG2B HG2B H 0 0 N N N N N N -17.767 3.070  -25.954 2.849  2.868  0.710  HG2B Z3E 29 
Z3E HXT  HXT  H 0 1 N Y N Y N Y -17.446 0.229  -22.162 2.761  -2.790 1.053  HXT  Z3E 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z3E C   O    DOUB N N 1  
Z3E C   CA   SING N N 2  
Z3E C   OXT  SING N N 3  
Z3E N   CA   SING N N 4  
Z3E N   H2   SING N N 5  
Z3E N   H    SING N N 6  
Z3E C1  C2   DOUB Y N 7  
Z3E C1  C6   SING Y N 8  
Z3E C1  C7   SING N N 9  
Z3E C2  C3   SING Y N 10 
Z3E C2  H8   SING N N 11 
Z3E C3  C4   DOUB Y N 12 
Z3E C3  H3   SING N N 13 
Z3E C4  C5   SING Y N 14 
Z3E C4  H4   SING N N 15 
Z3E C5  C6   DOUB Y N 16 
Z3E C5  H5   SING N N 17 
Z3E C6  H6   SING N N 18 
Z3E C7  OG1  SING N N 19 
Z3E C7  H7   SING N N 20 
Z3E C7  H7A  SING N N 21 
Z3E CA  CB   SING N N 22 
Z3E CA  HA   SING N N 23 
Z3E CB  OG1  SING N N 24 
Z3E CB  CG2  SING N N 25 
Z3E CB  HB   SING N N 26 
Z3E CG2 HG2  SING N N 27 
Z3E CG2 HG2A SING N N 28 
Z3E CG2 HG2B SING N N 29 
Z3E OXT HXT  SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z3E SMILES           ACDLabs              12.01 "O=C(O)C(N)C(OCc1ccccc1)C"                                                                                
Z3E SMILES_CANONICAL CACTVS               3.370 "C[C@@H](OCc1ccccc1)[C@H](N)C(O)=O"                                                                       
Z3E SMILES           CACTVS               3.370 "C[CH](OCc1ccccc1)[CH](N)C(O)=O"                                                                          
Z3E SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H]([C@@H](C(=O)O)N)OCc1ccccc1"                                                                       
Z3E SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C(C(=O)O)N)OCc1ccccc1"                                                                                
Z3E InChI            InChI                1.03  "InChI=1S/C11H15NO3/c1-8(10(12)11(13)14)15-7-9-5-3-2-4-6-9/h2-6,8,10H,7,12H2,1H3,(H,13,14)/t8-,10+/m1/s1" 
Z3E InChIKey         InChI                1.03  ONOURAAVVKGJNM-SCZZXKLOSA-N                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Z3E "SYSTEMATIC NAME" ACDLabs              12.01 O-benzyl-L-threonine                             
Z3E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-2-azanyl-3-phenylmethoxy-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z3E "Create component"  2010-10-27 RCSB 
Z3E "Modify descriptor" 2011-06-04 RCSB 
Z3E "Modify backbone"   2023-11-03 PDBE 
Z3E "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Z3E 
_pdbx_chem_comp_pcm.modified_residue_id                THR 
_pdbx_chem_comp_pcm.type                               Benzylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
