data_YRE
# 
_chem_comp.id                                    YRE 
_chem_comp.name                                  "(7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H47 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-16 
_chem_comp.pdbx_modified_date                    2023-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        597.745 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YRE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G6E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YRE C10 C1  C 0 1 N N N N N N 190.434 146.129 152.054 6.444  -2.575 1.750  C10 YRE 1  
YRE C11 C2  C 0 1 N N N N N N 190.689 147.400 152.469 4.955  -2.902 1.955  C11 YRE 2  
YRE C13 C3  C 0 1 N N S N N N 187.197 148.750 157.735 -1.456 -1.473 1.609  C13 YRE 3  
YRE C15 C4  C 0 1 N N N N N N 185.007 148.925 158.974 -1.214 0.864  1.064  C15 YRE 4  
YRE C16 C5  C 0 1 N N S N N N 183.954 148.226 159.831 -0.941 2.299  1.435  C16 YRE 5  
YRE C17 C6  C 0 1 N N N N N N 183.118 147.207 159.035 -1.499 3.222  0.350  C17 YRE 6  
YRE C02 C7  C 0 1 N N N N N N 186.817 148.757 156.263 -0.228 -1.995 0.908  C02 YRE 7  
YRE C04 C8  C 0 1 N N S N N N 186.860 149.858 154.024 0.878  -3.358 -0.729 C04 YRE 8  
YRE C05 C9  C 0 1 N N N N N N 188.138 149.678 153.229 2.014  -2.491 -0.252 C05 YRE 9  
YRE C07 C10 C 0 1 N N N N N N 189.604 148.384 151.690 4.189  -2.208 0.809  C07 YRE 10 
YRE C08 C11 C 0 1 N N N N N N 189.367 147.817 150.477 5.249  -2.040 -0.308 C08 YRE 11 
YRE C09 C12 C 0 1 N N N N N N 189.695 146.271 150.652 6.532  -1.693 0.487  C09 YRE 12 
YRE C18 C13 C 0 1 Y N N N N N 182.073 147.698 158.031 -0.474 3.393  -0.741 C18 YRE 13 
YRE C19 C14 C 0 1 Y N N N N N 182.401 148.608 157.042 -0.170 2.334  -1.574 C19 YRE 14 
YRE C20 C15 C 0 1 Y N N N N N 181.433 149.035 156.148 0.773  2.492  -2.579 C20 YRE 15 
YRE C22 C16 C 0 1 N N N N N N 182.849 150.769 155.441 1.680  0.306  -2.793 C22 YRE 16 
YRE C23 C17 C 0 1 N N N N N N 183.860 150.642 154.305 0.973  -0.962 -3.276 C23 YRE 17 
YRE C24 C18 C 0 1 N N N N N N 185.054 151.563 154.521 1.729  -2.192 -2.768 C24 YRE 18 
YRE C25 C19 C 0 1 N N N N N N 186.242 151.195 153.642 0.729  -3.225 -2.246 C25 YRE 19 
YRE C26 C20 C 0 1 Y N N N N N 180.144 148.546 156.241 1.409  3.713  -2.745 C26 YRE 20 
YRE C27 C21 C 0 1 Y N N N N N 179.817 147.631 157.226 1.103  4.769  -1.909 C27 YRE 21 
YRE C28 C22 C 0 1 Y N N N N N 180.783 147.207 158.122 0.162  4.610  -0.908 C28 YRE 22 
YRE C30 C23 C 0 1 N N N N N N 183.638 149.723 162.036 1.074  3.648  1.979  C30 YRE 23 
YRE C31 C24 C 0 1 N N N N N N 182.564 150.795 162.450 2.580  3.511  1.971  C31 YRE 24 
YRE C32 C25 C 0 1 N N N N N N 182.120 151.215 161.352 2.844  2.273  1.084  C32 YRE 25 
YRE C33 C26 C 0 1 N N N N N N 182.163 149.884 160.311 1.516  1.497  1.223  C33 YRE 26 
YRE C36 C27 C 0 1 N N N N N N 188.422 147.867 157.910 -2.646 -1.497 0.648  C36 YRE 27 
YRE C37 C28 C 0 1 N N N N N N 189.631 148.670 158.366 -3.885 -0.946 1.356  C37 YRE 28 
YRE C39 C29 C 0 1 N N N N N N 189.958 147.491 160.167 -5.408 -2.349 0.100  C39 YRE 29 
YRE C40 C30 C 0 1 N N N N N N 191.009 146.713 160.950 -6.561 -2.327 -0.907 C40 YRE 30 
YRE C42 C31 C 0 1 N N N N N N 192.063 146.189 158.930 -7.316 -0.232 -0.026 C42 YRE 31 
YRE C43 C32 C 0 1 N N N N N N 190.951 146.933 158.200 -6.171 -0.233 0.991  C43 YRE 32 
YRE N03 N1  N 0 1 N N N N N N 187.212 149.864 155.426 -0.388 -2.918 -0.092 N03 YRE 33 
YRE N06 N2  N 0 1 N N N N N N 188.366 148.491 152.432 3.085  -3.051 0.346  N06 YRE 34 
YRE N14 N3  N 0 1 N N N N N N 186.153 148.159 158.533 -1.198 -0.084 2.044  N14 YRE 35 
YRE N29 N4  N 0 1 N N N N N N 183.216 149.225 160.597 0.504  2.506  1.556  N29 YRE 36 
YRE N38 N5  N 0 1 N N N N N N 190.474 147.959 158.982 -5.027 -0.969 0.433  N38 YRE 37 
YRE O01 O1  O 0 1 N N N N N N 186.210 147.858 155.799 0.877  -1.607 1.222  O01 YRE 38 
YRE O12 O2  O 0 1 N N N N N N 188.960 150.520 153.265 1.966  -1.289 -0.406 O12 YRE 39 
YRE O21 O3  O 0 1 N N N N N N 181.755 149.957 155.145 1.074  1.450  -3.398 O21 YRE 40 
YRE O34 O4  O 0 1 N N N N N N 184.572 149.359 162.661 0.468  4.641  2.323  O34 YRE 41 
YRE O35 O5  O 0 1 N N N N N N 184.902 150.066 158.686 -1.443 0.558  -0.086 O35 YRE 42 
YRE O41 O6  O 0 1 N N N N N N 192.195 146.562 160.257 -7.651 -1.581 -0.360 O41 YRE 43 
YRE H1  H1  H 0 1 N N N N N N 189.786 145.612 152.778 6.829  -2.031 2.612  H1  YRE 44 
YRE H2  H2  H 0 1 N N N N N N 191.373 145.569 151.937 7.012  -3.494 1.605  H2  YRE 45 
YRE H3  H3  H 0 1 N N N N N N 191.718 147.686 152.204 4.799  -3.980 1.908  H3  YRE 46 
YRE H4  H4  H 0 1 N N N N N N 190.556 147.477 153.558 4.617  -2.517 2.917  H4  YRE 47 
YRE H5  H5  H 0 1 N N N N N N 187.421 149.774 158.070 -1.675 -2.094 2.478  H5  YRE 48 
YRE H6  H6  H 0 1 N N N N N N 184.519 147.631 160.564 -1.422 2.526  2.387  H6  YRE 49 
YRE H7  H7  H 0 1 N N N N N N 182.585 146.588 159.772 -2.405 2.785  -0.068 H7  YRE 50 
YRE H8  H8  H 0 1 N N N N N N 183.828 146.581 158.475 -1.732 4.194  0.785  H8  YRE 51 
YRE H9  H9  H 0 1 N N N N N N 186.158 149.042 153.797 1.076  -4.398 -0.470 H9  YRE 52 
YRE H10 H10 H 0 1 N N N N N N 190.071 149.375 151.588 3.816  -1.236 1.133  H10 YRE 53 
YRE H11 H11 H 0 1 N N N N N N 190.019 148.263 149.711 5.377  -2.970 -0.862 H11 YRE 54 
YRE H12 H12 H 0 1 N N N N N N 188.315 147.955 150.188 4.978  -1.224 -0.978 H12 YRE 55 
YRE H13 H13 H 0 1 N N N N N N 188.766 145.682 150.649 6.540  -0.638 0.758  H13 YRE 56 
YRE H14 H14 H 0 1 N N N N N N 190.351 145.926 149.839 7.420  -1.946 -0.093 H14 YRE 57 
YRE H15 H15 H 0 1 N N N N N N 183.410 148.985 156.967 -0.667 1.384  -1.444 H15 YRE 58 
YRE H16 H16 H 0 1 N N N N N N 183.309 150.444 156.386 1.594  0.379  -1.709 H16 YRE 59 
YRE H17 H17 H 0 1 N N N N N N 182.522 151.815 155.533 2.733  0.262  -3.072 H17 YRE 60 
YRE H18 H18 H 0 1 N N N N N N 183.369 150.908 153.357 -0.047 -0.978 -2.893 H18 YRE 61 
YRE H19 H19 H 0 1 N N N N N N 184.214 149.602 154.255 0.952  -0.974 -4.366 H19 YRE 62 
YRE H20 H20 H 0 1 N N N N N N 185.362 151.499 155.575 2.307  -2.626 -3.584 H20 YRE 63 
YRE H21 H21 H 0 1 N N N N N N 184.750 152.594 154.289 2.401  -1.898 -1.963 H21 YRE 64 
YRE H22 H22 H 0 1 N N N N N N 187.008 151.978 153.739 0.923  -4.189 -2.716 H22 YRE 65 
YRE H23 H23 H 0 1 N N N N N N 185.904 151.141 152.597 -0.285 -2.903 -2.484 H23 YRE 66 
YRE H24 H24 H 0 1 N N N N N N 179.390 148.879 155.543 2.144  3.838  -3.526 H24 YRE 67 
YRE H25 H25 H 0 1 N N N N N N 178.810 147.248 157.296 1.598  5.720  -2.037 H25 YRE 68 
YRE H26 H26 H 0 1 N N N N N N 180.530 146.493 158.892 -0.076 5.436  -0.255 H26 YRE 69 
YRE H27 H27 H 0 1 N N N N N N 183.027 151.612 163.024 3.041  4.398  1.535  H27 YRE 70 
YRE H28 H28 H 0 1 N N N N N N 181.762 150.336 163.047 2.954  3.346  2.981  H28 YRE 71 
YRE H29 H29 H 0 1 N N N N N N 182.754 152.026 160.966 3.018  2.565  0.048  H29 YRE 72 
YRE H30 H30 H 0 1 N N N N N N 181.089 151.579 161.468 3.680  1.689  1.468  H30 YRE 73 
YRE H31 H31 H 0 1 N N N N N N 182.201 150.223 159.265 1.261  1.003  0.286  H31 YRE 74 
YRE H32 H32 H 0 1 N N N N N N 181.272 149.257 160.461 1.597  0.764  2.026  H32 YRE 75 
YRE H33 H33 H 0 1 N N N N N N 188.201 147.096 158.663 -2.421 -0.882 -0.224 H33 YRE 76 
YRE H34 H34 H 0 1 N N N N N N 188.655 147.386 156.949 -2.835 -2.523 0.330  H34 YRE 77 
YRE H35 H35 H 0 1 N N N N N N 190.117 149.110 157.483 -4.109 -1.561 2.227  H35 YRE 78 
YRE H36 H36 H 0 1 N N N N N N 189.290 149.474 159.035 -3.695 0.080  1.674  H36 YRE 79 
YRE H37 H37 H 0 1 N N N N N N 189.616 148.344 160.772 -5.726 -2.867 1.005  H37 YRE 80 
YRE H38 H38 H 0 1 N N N N N N 189.106 146.829 159.952 -4.554 -2.868 -0.335 H38 YRE 81 
YRE H39 H39 H 0 1 N N N N N N 191.216 147.250 161.888 -6.226 -1.857 -1.832 H39 YRE 82 
YRE H40 H40 H 0 1 N N N N N N 190.608 145.715 161.180 -6.884 -3.347 -1.114 H40 YRE 83 
YRE H41 H41 H 0 1 N N N N N N 191.846 145.111 158.891 -8.186 0.263  0.406  H41 YRE 84 
YRE H42 H42 H 0 1 N N N N N N 193.014 146.390 158.415 -7.004 0.299  -0.925 H42 YRE 85 
YRE H43 H43 H 0 1 N N N N N N 191.346 147.346 157.260 -5.874 0.793  1.206  H43 YRE 86 
YRE H44 H44 H 0 1 N N N N N N 190.131 146.234 157.978 -6.501 -0.717 1.910  H44 YRE 87 
YRE H45 H45 H 0 1 N N N N N N 187.726 150.630 155.813 -1.257 -3.255 -0.362 H45 YRE 88 
YRE H46 H46 H 0 1 N N N N N N 187.683 147.761 152.395 3.124  -4.012 0.469  H46 YRE 89 
YRE H47 H47 H 0 1 N N N N N N 186.222 147.195 158.789 -1.027 0.140  2.972  H47 YRE 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YRE C08 C09 SING N N 1  
YRE C08 C07 SING N N 2  
YRE C09 C10 SING N N 3  
YRE C07 N06 SING N N 4  
YRE C07 C11 SING N N 5  
YRE C10 C11 SING N N 6  
YRE N06 C05 SING N N 7  
YRE C05 O12 DOUB N N 8  
YRE C05 C04 SING N N 9  
YRE C25 C04 SING N N 10 
YRE C25 C24 SING N N 11 
YRE C04 N03 SING N N 12 
YRE C23 C24 SING N N 13 
YRE C23 C22 SING N N 14 
YRE O21 C22 SING N N 15 
YRE O21 C20 SING N N 16 
YRE N03 C02 SING N N 17 
YRE O01 C02 DOUB N N 18 
YRE C20 C26 DOUB Y N 19 
YRE C20 C19 SING Y N 20 
YRE C26 C27 SING Y N 21 
YRE C02 C13 SING N N 22 
YRE C19 C18 DOUB Y N 23 
YRE C27 C28 DOUB Y N 24 
YRE C13 C36 SING N N 25 
YRE C13 N14 SING N N 26 
YRE C36 C37 SING N N 27 
YRE C18 C28 SING Y N 28 
YRE C18 C17 SING N N 29 
YRE C43 C42 SING N N 30 
YRE C43 N38 SING N N 31 
YRE C37 N38 SING N N 32 
YRE N14 C15 SING N N 33 
YRE O35 C15 DOUB N N 34 
YRE C42 O41 SING N N 35 
YRE C15 C16 SING N N 36 
YRE N38 C39 SING N N 37 
YRE C17 C16 SING N N 38 
YRE C16 N29 SING N N 39 
YRE C39 C40 SING N N 40 
YRE O41 C40 SING N N 41 
YRE C33 N29 SING N N 42 
YRE C33 C32 SING N N 43 
YRE N29 C30 SING N N 44 
YRE C32 C31 SING N N 45 
YRE C30 C31 SING N N 46 
YRE C30 O34 DOUB N N 47 
YRE C10 H1  SING N N 48 
YRE C10 H2  SING N N 49 
YRE C11 H3  SING N N 50 
YRE C11 H4  SING N N 51 
YRE C13 H5  SING N N 52 
YRE C16 H6  SING N N 53 
YRE C17 H7  SING N N 54 
YRE C17 H8  SING N N 55 
YRE C04 H9  SING N N 56 
YRE C07 H10 SING N N 57 
YRE C08 H11 SING N N 58 
YRE C08 H12 SING N N 59 
YRE C09 H13 SING N N 60 
YRE C09 H14 SING N N 61 
YRE C19 H15 SING N N 62 
YRE C22 H16 SING N N 63 
YRE C22 H17 SING N N 64 
YRE C23 H18 SING N N 65 
YRE C23 H19 SING N N 66 
YRE C24 H20 SING N N 67 
YRE C24 H21 SING N N 68 
YRE C25 H22 SING N N 69 
YRE C25 H23 SING N N 70 
YRE C26 H24 SING N N 71 
YRE C27 H25 SING N N 72 
YRE C28 H26 SING N N 73 
YRE C31 H27 SING N N 74 
YRE C31 H28 SING N N 75 
YRE C32 H29 SING N N 76 
YRE C32 H30 SING N N 77 
YRE C33 H31 SING N N 78 
YRE C33 H32 SING N N 79 
YRE C36 H33 SING N N 80 
YRE C36 H34 SING N N 81 
YRE C37 H35 SING N N 82 
YRE C37 H36 SING N N 83 
YRE C39 H37 SING N N 84 
YRE C39 H38 SING N N 85 
YRE C40 H39 SING N N 86 
YRE C40 H40 SING N N 87 
YRE C42 H41 SING N N 88 
YRE C42 H42 SING N N 89 
YRE C43 H43 SING N N 90 
YRE C43 H44 SING N N 91 
YRE N03 H45 SING N N 92 
YRE N06 H46 SING N N 93 
YRE N14 H47 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YRE SMILES           ACDLabs              12.01 "O=C1CCCN1C1Cc2cccc(OCCCCC(NC(=O)C(CCN3CCOCC3)NC1=O)C(=O)NC1CCCC1)c2"                                                                                                                                                                                  
YRE InChI            InChI                1.06  "InChI=1S/C32H47N5O6/c38-29-12-6-14-37(29)28-22-23-7-5-10-25(21-23)43-18-4-3-11-26(30(39)33-24-8-1-2-9-24)34-31(40)27(35-32(28)41)13-15-36-16-19-42-20-17-36/h5,7,10,21,24,26-28H,1-4,6,8-9,11-20,22H2,(H,33,39)(H,34,40)(H,35,41)/t26-,27-,28-/m0/s1" 
YRE InChIKey         InChI                1.06  UGEFECOTMZPOER-KCHLEUMXSA-N                                                                                                                                                                                                                            
YRE SMILES_CANONICAL CACTVS               3.385 "O=C1CCCN1[C@H]2Cc3cccc(OCCCC[C@H](NC(=O)[C@H](CCN4CCOCC4)NC2=O)C(=O)NC5CCCC5)c3"                                                                                                                                                                      
YRE SMILES           CACTVS               3.385 "O=C1CCCN1[CH]2Cc3cccc(OCCCC[CH](NC(=O)[CH](CCN4CCOCC4)NC2=O)C(=O)NC5CCCC5)c3"                                                                                                                                                                         
YRE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCC[C@H](NC(=O)[C@@H](NC(=O)[C@H](C2)N3CCCC3=O)CCN4CCOCC4)C(=O)NC5CCCC5"                                                                                                                                                                 
YRE SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)OCCCCC(NC(=O)C(NC(=O)C(C2)N3CCCC3=O)CCN4CCOCC4)C(=O)NC5CCCC5"                                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YRE "SYSTEMATIC NAME" ACDLabs              12.01 "(7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide"                                      
YRE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(7~{S},10~{S},13~{S})-~{N}-cyclopentyl-10-(2-morpholin-4-ylethyl)-9,12-bis(oxidanylidene)-13-(2-oxidanylidenepyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(18),15(19),16-triene-7-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YRE "Create component" 2023-02-16 RCSB 
YRE "Initial release"  2023-12-20 RCSB 
# 
