data_Y4E
# 
_chem_comp.id                                    Y4E 
_chem_comp.name                                  "[(1~{R},3~{a}~{R})-1,3,3~{a},4-tetrahydro-[1,3]thiazolo[3,4-a]benzimidazol-1-yl]methanethiol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 N2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-20 
_chem_comp.pdbx_modified_date                    2024-04-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        224.346 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y4E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R5U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y4E C10  C1  C 0 1 Y N N N N N -27.202 3.087 60.759 3.034  1.774  0.422  C10  Y4E 1  
Y4E C11  C2  C 0 1 Y N N N N N -28.219 2.868 61.660 3.895  0.707  0.242  C11  Y4E 2  
Y4E C12  C3  C 0 1 Y N N N N N -29.258 3.796 61.797 3.401  -0.529 -0.128 C12  Y4E 3  
Y4E C13  C4  C 0 1 Y N N N N N -29.282 4.961 61.014 2.036  -0.705 -0.322 C13  Y4E 4  
Y4E C02  C5  C 0 1 N N N N N N -27.080 7.850 57.613 -1.735 1.571  0.635  C02  Y4E 5  
Y4E C03  C6  C 0 1 N N R N N N -27.241 7.393 59.111 -0.991 0.245  0.805  C03  Y4E 6  
Y4E C05  C7  C 0 1 N N N N N N -29.022 8.412 60.813 -0.946 -2.364 0.141  C05  Y4E 7  
Y4E C06  C8  C 0 1 N N R N N N -29.553 7.140 60.100 -0.103 -1.449 -0.773 C06  Y4E 8  
Y4E C08  C9  C 0 1 Y N N N N N -28.221 5.188 60.071 1.169  0.369  -0.138 C08  Y4E 9  
Y4E C09  C10 C 0 1 Y N N N N N -27.198 4.241 59.964 1.675  1.607  0.238  C09  Y4E 10 
Y4E N07  N1  N 0 1 N N N N N N -28.407 6.459 59.343 -0.151 -0.041 -0.381 N07  Y4E 11 
Y4E N14  N2  N 0 1 N N N N N N -30.128 6.060 60.903 1.309  -1.844 -0.696 N14  Y4E 12 
Y4E S01  S1  S 0 1 N N N N N N -26.694 6.467 56.402 -2.801 1.483  -0.830 S01  Y4E 13 
Y4E S04  S2  S 0 1 N N N N N N -27.449 8.883 60.121 -2.171 -1.167 0.820  S04  Y4E 14 
Y4E H101 H1  H 0 0 N N N N N N -26.403 2.366 60.664 3.425  2.739  0.711  H101 Y4E 15 
Y4E H111 H2  H 0 0 N N N N N N -28.215 1.974 62.266 4.956  0.841  0.391  H111 Y4E 16 
Y4E H121 H3  H 0 0 N N N N N N -30.048 3.614 62.511 4.076  -1.360 -0.268 H121 Y4E 17 
Y4E H022 H4  H 0 0 N N N N N N -26.262 8.584 57.566 -2.345 1.761  1.518  H022 Y4E 18 
Y4E H021 H5  H 0 0 N N N N N N -28.020 8.327 57.298 -1.013 2.379  0.512  H021 Y4E 19 
Y4E H031 H6  H 0 0 N N N N N N -26.307 6.917 59.444 -0.386 0.256  1.712  H031 Y4E 20 
Y4E H051 H7  H 0 0 N N N N N N -29.741 9.233 60.677 -1.441 -3.145 -0.436 H051 Y4E 21 
Y4E H052 H8  H 0 0 N N N N N N -28.901 8.205 61.886 -0.336 -2.793 0.935  H052 Y4E 22 
Y4E H061 H9  H 0 0 N N N N N N -30.299 7.463 59.359 -0.450 -1.542 -1.802 H061 Y4E 23 
Y4E H091 H10 H 0 0 N N N N N N -26.395 4.401 59.260 1.005  2.442  0.380  H091 Y4E 24 
Y4E H141 H11 H 0 0 N N N N N N -30.318 6.410 61.820 1.671  -2.727 -0.871 H141 Y4E 25 
Y4E H011 H12 H 0 0 N N N N N N -26.616 7.109 55.274 -3.382 2.696  -0.854 H011 Y4E 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y4E S01 C02  SING N N 1  
Y4E C02 C03  SING N N 2  
Y4E C03 N07  SING N N 3  
Y4E C03 S04  SING N N 4  
Y4E N07 C08  SING N N 5  
Y4E N07 C06  SING N N 6  
Y4E C09 C08  DOUB Y N 7  
Y4E C09 C10  SING Y N 8  
Y4E C08 C13  SING Y N 9  
Y4E C06 C05  SING N N 10 
Y4E C06 N14  SING N N 11 
Y4E S04 C05  SING N N 12 
Y4E C10 C11  DOUB Y N 13 
Y4E N14 C13  SING N N 14 
Y4E C13 C12  DOUB Y N 15 
Y4E C11 C12  SING Y N 16 
Y4E C10 H101 SING N N 17 
Y4E C11 H111 SING N N 18 
Y4E C12 H121 SING N N 19 
Y4E C02 H022 SING N N 20 
Y4E C02 H021 SING N N 21 
Y4E C03 H031 SING N N 22 
Y4E C05 H051 SING N N 23 
Y4E C05 H052 SING N N 24 
Y4E C06 H061 SING N N 25 
Y4E C09 H091 SING N N 26 
Y4E N14 H141 SING N N 27 
Y4E S01 H011 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y4E InChI            InChI                1.06  "InChI=1S/C10H12N2S2/c13-5-10-12-8-4-2-1-3-7(8)11-9(12)6-14-10/h1-4,9-11,13H,5-6H2/t9-,10-/m1/s1" 
Y4E InChIKey         InChI                1.06  PBXWHODMWKJRIF-NXEZZACHSA-N                                                                       
Y4E SMILES_CANONICAL CACTVS               3.385 "SC[C@H]1SC[C@@H]2Nc3ccccc3N12"                                                                   
Y4E SMILES           CACTVS               3.385 "SC[CH]1SC[CH]2Nc3ccccc3N12"                                                                      
Y4E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)N[C@@H]3N2[C@H](SC3)CS"                                                               
Y4E SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC3N2C(SC3)CS"                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           Y4E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},3~{a}~{R})-1,3,3~{a},4-tetrahydro-[1,3]thiazolo[3,4-a]benzimidazol-1-yl]methanethiol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y4E "Create component" 2023-11-20 PDBE 
Y4E "Initial release"  2024-04-10 RCSB 
# 
