data_Y2E
# 
_chem_comp.id                                    Y2E 
_chem_comp.name                                  "3,3,3-trifluoropropyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 Cl F4 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-27 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        587.954 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FM5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2E C17  C1  C  0 1 N N S -26.416 -1.391 -75.719 0.124  -0.874 -1.101 C17  Y2E 1  
Y2E C20  C2  C  0 1 N N N -25.021 2.184  -75.824 -3.494 -0.125 -0.150 C20  Y2E 2  
Y2E C22  C3  C  0 1 Y N N -23.690 4.231  -76.376 -5.839 0.247  -0.034 C22  Y2E 3  
Y2E C24  C4  C  0 1 Y N N -23.998 6.393  -75.470 -8.003 1.243  0.262  C24  Y2E 4  
Y2E C26  C5  C  0 1 Y N N -23.260 6.931  -76.488 -8.170 0.526  1.436  C26  Y2E 5  
Y2E C28  C6  C  0 1 Y N N -22.761 6.143  -77.501 -7.174 -0.329 1.875  C28  Y2E 6  
Y2E C02  C7  C  0 1 N N N -29.983 -1.617 -76.581 3.474  -0.977 0.460  C02  Y2E 7  
Y2E C04  C8  C  0 1 N N N -31.374 -0.859 -78.311 5.650  -0.389 1.246  C04  Y2E 8  
Y2E C05  C9  C  0 1 N N N -32.071 -1.985 -79.064 6.622  0.792  1.214  C05  Y2E 9  
Y2E C06  C10 C  0 1 N N N -31.126 -2.811 -79.940 7.898  0.423  1.972  C06  Y2E 10 
Y2E C11  C11 C  0 1 N N R -27.486 -1.553 -76.769 1.166  -1.612 -0.246 C11  Y2E 11 
Y2E C12  C12 C  0 1 N N N -27.218 -2.704 -77.799 1.551  -2.939 -0.905 C12  Y2E 12 
Y2E C14  C13 C  0 1 N N N -24.931 -2.948 -78.780 0.559  -5.159 -1.278 C14  Y2E 13 
Y2E C19  C14 C  0 1 N N N -25.166 0.691  -76.051 -2.259 -0.389 -0.947 C19  Y2E 14 
Y2E C23  C15 C  0 1 Y N N -24.246 5.038  -75.404 -6.839 1.105  -0.474 C23  Y2E 15 
Y2E C29  C16 C  0 1 Y N N -22.993 4.768  -77.443 -6.011 -0.470 1.144  C29  Y2E 16 
Y2E C32  C17 C  0 1 Y N N -28.447 -2.125 -74.638 2.062  0.449  -0.921 C32  Y2E 17 
Y2E C33  C18 C  0 1 Y N N -27.076 -1.910 -74.381 0.795  0.427  -1.480 C33  Y2E 18 
Y2E C34  C19 C  0 1 Y N N -26.558 -2.126 -73.108 0.345  1.491  -2.239 C34  Y2E 19 
Y2E C35  C20 C  0 1 Y N N -27.401 -2.591 -72.091 1.160  2.588  -2.447 C35  Y2E 20 
Y2E C36  C21 C  0 1 Y N N -28.772 -2.824 -72.321 2.427  2.620  -1.894 C36  Y2E 21 
Y2E C37  C22 C  0 1 N N N -29.673 -3.328 -71.169 3.315  3.816  -2.120 C37  Y2E 22 
Y2E C39  C23 C  0 1 N N N -31.263 -1.626 -70.665 3.943  5.983  -1.241 C39  Y2E 23 
Y2E C40  C24 C  0 1 Y N N -29.281 -2.589 -73.597 2.879  1.561  -1.136 C40  Y2E 24 
Y2E F07  F1  F  0 1 N N N -31.789 -3.930 -80.312 7.580  0.117  3.300  F07  Y2E 25 
Y2E F08  F2  F  0 1 N N N -29.996 -3.128 -79.257 8.495  -0.688 1.368  F08  Y2E 26 
Y2E F09  F3  F  0 1 N N N -30.834 -2.159 -81.103 8.787  1.503  1.943  F09  Y2E 27 
Y2E F25  F4  F  0 1 N N N -24.487 7.217  -74.517 -8.977 2.076  -0.165 F25  Y2E 28 
Y2E N10  N1  N  0 1 N N N -28.656 -1.798 -76.012 2.325  -0.716 -0.194 N10  Y2E 29 
Y2E N13  N2  N  0 1 N N N -26.189 -2.238 -78.727 0.417  -3.864 -0.838 N13  Y2E 30 
Y2E N15  N3  N  0 1 N N N -23.899 -2.457 -79.647 1.702  -5.562 -1.756 N15  Y2E 31 
Y2E N16  N4  N  0 1 N N N -24.737 -3.989 -78.093 -0.505 -6.027 -1.215 N16  Y2E 32 
Y2E N18  N5  N  0 1 N N N -26.280 -0.026 -75.494 -1.088 -0.615 -0.319 N18  Y2E 33 
Y2E N21  N6  N  0 1 N N N -23.906 2.816  -76.464 -4.665 0.101  -0.777 N21  Y2E 34 
Y2E N38  N7  N  0 1 N N N -29.993 -2.221 -70.285 3.091  4.800  -1.053 N38  Y2E 35 
Y2E O01  O1  O  0 1 N N N -30.972 -1.722 -75.936 3.641  -2.058 0.989  O01  Y2E 36 
Y2E O03  O2  O  0 1 N N N -30.111 -1.318 -77.920 4.439  -0.040 0.526  O03  Y2E 37 
Y2E O30  O3  O  0 1 N N N -25.783 2.772  -75.131 -3.443 -0.115 1.063  O30  Y2E 38 
Y2E O31  O4  O  0 1 N N N -24.352 0.131  -76.697 -2.310 -0.399 -2.159 O31  Y2E 39 
Y2E CL27 CL1 CL 0 0 N N N -23.012 8.689  -76.522 -9.630 0.701  2.358  CL27 Y2E 40 
Y2E H1   H1  H  0 1 N N N -25.485 -1.926 -75.959 -0.116 -1.452 -1.994 H1   Y2E 41 
Y2E H2   H2  H  0 1 N N N -22.205 6.577  -78.319 -7.306 -0.886 2.791  H2   Y2E 42 
Y2E H3   H3  H  0 1 N N N -31.266 0.018  -78.966 6.115  -1.255 0.775  H3   Y2E 43 
Y2E H4   H4  H  0 1 N N N -31.962 -0.583 -77.423 5.402  -0.628 2.280  H4   Y2E 44 
Y2E H5   H5  H  0 1 N N N -32.847 -1.545 -79.708 6.870  1.030  0.179  H5   Y2E 45 
Y2E H6   H6  H  0 1 N N N -32.541 -2.656 -78.330 6.156  1.658  1.685  H6   Y2E 46 
Y2E H7   H7  H  0 1 N N N -27.584 -0.610 -77.326 0.778  -1.787 0.757  H7   Y2E 47 
Y2E H8   H8  H  0 1 N N N -28.141 -2.937 -78.349 1.815  -2.763 -1.948 H8   Y2E 48 
Y2E H9   H9  H  0 1 N N N -26.868 -3.604 -77.272 2.404  -3.371 -0.382 H9   Y2E 49 
Y2E H10  H10 H  0 1 N N N -24.856 4.621  -74.616 -6.709 1.663  -1.389 H10  Y2E 50 
Y2E H11  H11 H  0 1 N N N -22.629 4.124  -78.230 -5.235 -1.137 1.488  H11  Y2E 51 
Y2E H12  H12 H  0 1 N N N -25.514 -1.937 -72.906 -0.645 1.465  -2.670 H12  Y2E 52 
Y2E H13  H13 H  0 1 N N N -26.992 -2.775 -71.109 0.807  3.419  -3.041 H13  Y2E 53 
Y2E H14  H14 H  0 1 N N N -30.602 -3.745 -71.585 4.359  3.500  -2.110 H14  Y2E 54 
Y2E H15  H15 H  0 1 N N N -29.143 -4.108 -70.603 3.081  4.265  -3.085 H15  Y2E 55 
Y2E H16  H16 H  0 1 N N N -31.494 -0.790 -69.989 4.990  5.682  -1.225 H16  Y2E 56 
Y2E H17  H17 H  0 1 N N N -31.199 -1.255 -71.698 3.713  6.447  -2.200 H17  Y2E 57 
Y2E H18  H18 H  0 1 N N N -32.058 -2.383 -70.596 3.757  6.696  -0.438 H18  Y2E 58 
Y2E H19  H19 H  0 1 N N N -30.329 -2.764 -73.793 3.869  1.592  -0.706 H19  Y2E 59 
Y2E H20  H20 H  0 1 N N N -26.352 -1.444 -79.313 -0.434 -3.563 -0.482 H20  Y2E 60 
Y2E H21  H21 H  0 1 N N N -23.079 -3.029 -79.615 1.803  -6.476 -2.067 H21  Y2E 61 
Y2E H22  H22 H  0 1 N N N -25.461 -4.337 -77.498 -1.356 -5.726 -0.860 H22  Y2E 62 
Y2E H23  H23 H  0 1 N N N -23.859 -4.465 -78.144 -0.405 -6.940 -1.526 H23  Y2E 63 
Y2E H24  H24 H  0 1 N N N -26.959 0.459  -74.943 -1.047 -0.607 0.650  H24  Y2E 64 
Y2E H25  H25 H  0 1 N N N -23.262 2.256  -76.985 -4.693 0.163  -1.745 H25  Y2E 65 
Y2E H26  H26 H  0 1 N N N -30.053 -2.556 -69.345 2.118  5.061  -1.000 H26  Y2E 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2E F09  C06 SING N N 1  
Y2E F07  C06 SING N N 2  
Y2E C06  F08 SING N N 3  
Y2E C06  C05 SING N N 4  
Y2E N15  C14 DOUB N N 5  
Y2E C05  C04 SING N N 6  
Y2E C14  N13 SING N N 7  
Y2E C14  N16 SING N N 8  
Y2E N13  C12 SING N N 9  
Y2E C04  O03 SING N N 10 
Y2E O03  C02 SING N N 11 
Y2E C12  C11 SING N N 12 
Y2E C28  C29 DOUB Y N 13 
Y2E C28  C26 SING Y N 14 
Y2E C29  C22 SING Y N 15 
Y2E C11  N10 SING N N 16 
Y2E C11  C17 SING N N 17 
Y2E O31  C19 DOUB N N 18 
Y2E C02  N10 SING N N 19 
Y2E C02  O01 DOUB N N 20 
Y2E CL27 C26 SING N N 21 
Y2E C26  C24 DOUB Y N 22 
Y2E N21  C22 SING N N 23 
Y2E N21  C20 SING N N 24 
Y2E C22  C23 DOUB Y N 25 
Y2E C19  C20 SING N N 26 
Y2E C19  N18 SING N N 27 
Y2E N10  C32 SING N N 28 
Y2E C20  O30 DOUB N N 29 
Y2E C17  N18 SING N N 30 
Y2E C17  C33 SING N N 31 
Y2E C24  C23 SING Y N 32 
Y2E C24  F25 SING N N 33 
Y2E C32  C33 DOUB Y N 34 
Y2E C32  C40 SING Y N 35 
Y2E C33  C34 SING Y N 36 
Y2E C40  C36 DOUB Y N 37 
Y2E C34  C35 DOUB Y N 38 
Y2E C36  C35 SING Y N 39 
Y2E C36  C37 SING N N 40 
Y2E C37  N38 SING N N 41 
Y2E C39  N38 SING N N 42 
Y2E C17  H1  SING N N 43 
Y2E C28  H2  SING N N 44 
Y2E C04  H3  SING N N 45 
Y2E C04  H4  SING N N 46 
Y2E C05  H5  SING N N 47 
Y2E C05  H6  SING N N 48 
Y2E C11  H7  SING N N 49 
Y2E C12  H8  SING N N 50 
Y2E C12  H9  SING N N 51 
Y2E C23  H10 SING N N 52 
Y2E C29  H11 SING N N 53 
Y2E C34  H12 SING N N 54 
Y2E C35  H13 SING N N 55 
Y2E C37  H14 SING N N 56 
Y2E C37  H15 SING N N 57 
Y2E C39  H16 SING N N 58 
Y2E C39  H17 SING N N 59 
Y2E C39  H18 SING N N 60 
Y2E C40  H19 SING N N 61 
Y2E N13  H20 SING N N 62 
Y2E N15  H21 SING N N 63 
Y2E N16  H22 SING N N 64 
Y2E N16  H23 SING N N 65 
Y2E N18  H24 SING N N 66 
Y2E N21  H25 SING N N 67 
Y2E N38  H26 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2E SMILES           ACDLabs              12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCCC(F)(F)F)CNC"                                                                                                                                                              
Y2E InChI            InChI                1.06  "InChI=1S/C24H26ClF4N7O4/c1-32-10-12-2-4-14-17(8-12)36(23(39)40-7-6-24(27,28)29)18(11-33-22(30)31)19(14)35-21(38)20(37)34-13-3-5-15(25)16(26)9-13/h2-5,8-9,18-19,32H,6-7,10-11H2,1H3,(H,34,37)(H,35,38)(H4,30,31,33)/t18-,19+/m1/s1" 
Y2E InChIKey         InChI                1.06  PUALTKTUZNGQRL-MOPGFXCFSA-N                                                                                                                                                                                                          
Y2E SMILES_CANONICAL CACTVS               3.385 "CNCc1ccc2[C@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[C@@H](CNC(N)=N)N(C(=O)OCCC(F)(F)F)c2c1"                                                                                                                                                 
Y2E SMILES           CACTVS               3.385 "CNCc1ccc2[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[CH](CNC(N)=N)N(C(=O)OCCC(F)(F)F)c2c1"                                                                                                                                                    
Y2E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCCC(F)(F)F)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl"                                                                                                                                             
Y2E SMILES           "OpenEye OEToolkits" 2.0.7 "CNCc1ccc2c(c1)N(C(C2NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC(=N)N)C(=O)OCCC(F)(F)F"                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2E "SYSTEMATIC NAME" ACDLabs              12.01 "3,3,3-trifluoropropyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate"                                      
Y2E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3,3,3-tris(fluoranyl)propyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2E "Create component" 2022-12-27 RCSB 
Y2E "Initial release"  2023-04-05 RCSB 
# 
