data_XNE
# 
_chem_comp.id                                    XNE 
_chem_comp.name                                  "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H30 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XNE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PAC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XNE O19  O1  O 0 1 N N N N N N -22.405 -8.387  10.511 0.922   -4.879 0.536  O19  XNE 1  
XNE C15  C1  C 0 1 Y N N N N N -22.416 -12.215 12.142 -0.633  -1.014 -0.474 C15  XNE 2  
XNE C13  C2  C 0 1 Y N N N N N -26.686 -13.843 15.807 -7.622  -0.316 0.837  C13  XNE 3  
XNE C12  C3  C 0 1 Y N N N N N -27.808 -14.532 16.249 -8.699  0.509  1.086  C12  XNE 4  
XNE C17  C4  C 0 1 Y N N N N N -22.284 -10.736 10.476 0.989   -2.485 0.080  C17  XNE 5  
XNE C10  C5  C 0 1 N N N N N N -30.339 -14.986 16.290 -9.828  2.740  1.006  C10  XNE 6  
XNE C01  C6  C 0 1 N N N N N N -22.348 -12.343 15.798 -3.273  -1.734 -2.240 C01  XNE 7  
XNE C02  C7  C 0 1 N N S N N N -23.222 -12.116 14.603 -3.115  -1.093 -0.859 C02  XNE 8  
XNE C04  C8  C 0 1 N N N N N N -25.554 -12.168 14.265 -5.318  -0.676 -0.040 C04  XNE 9  
XNE C06  C9  C 0 1 Y N N N N N -26.827 -12.859 14.800 -6.475  0.202  0.230  C06  XNE 10 
XNE C07  C10 C 0 1 Y N N N N N -28.074 -12.579 14.286 -6.428  1.553  -0.120 C07  XNE 11 
XNE C08  C11 C 0 1 Y N N N N N -29.206 -13.230 14.830 -7.512  2.366  0.135  C08  XNE 12 
XNE C09  C12 C 0 1 Y N N N N N -29.081 -14.254 15.782 -8.647  1.845  0.731  C09  XNE 13 
XNE C14  C13 C 0 1 Y N N N N N -22.699 -12.884 13.358 -1.810  -0.343 -0.799 C14  XNE 14 
XNE C18  C14 C 0 1 N N N N N N -22.503 -9.447  9.833  1.646   -3.745 0.434  C18  XNE 15 
XNE C21  C15 C 0 1 Y N N N N N -21.858 -11.970 9.929  1.619   -1.261 -0.061 C21  XNE 16 
XNE C22  C16 C 0 1 Y N N N N N -21.331 -12.191 8.573  3.061   -0.982 0.119  C22  XNE 17 
XNE C23  C17 C 0 1 Y N N N N N -20.366 -11.321 8.005  4.009   -1.550 -0.741 C23  XNE 18 
XNE C24  C18 C 0 1 Y N N N N N -19.908 -11.613 6.735  5.344   -1.256 -0.530 C24  XNE 19 
XNE C25  C19 C 0 1 Y N N N N N -20.435 -12.695 6.044  5.698   -0.420 0.514  C25  XNE 20 
XNE C26  C20 C 0 1 N N N N N N -19.968 -13.016 4.640  7.152   -0.103 0.750  C26  XNE 21 
XNE C28  C21 C 0 1 N N N N N N -19.522 -15.336 4.647  6.787   2.292  0.713  C28  XNE 22 
XNE C29  C22 C 0 1 N N N N N N -18.600 -16.519 4.482  7.121   3.579  -0.045 C29  XNE 23 
XNE C31  C23 C 0 1 N N N N N N -17.690 -15.234 2.655  9.257   2.686  -0.661 C31  XNE 24 
XNE C32  C24 C 0 1 N N N N N N -18.284 -13.976 3.251  8.944   1.387  0.091  C32  XNE 25 
XNE C34  C25 C 0 1 Y N N N N N -21.777 -13.255 7.848  3.499   -0.144 1.145  C34  XNE 26 
XNE C35  C26 C 0 1 Y N N N N N -21.936 -12.887 10.981 0.576   -0.295 -0.423 C35  XNE 27 
XNE C36  C27 C 0 1 Y N N N N N -21.678 -14.273 11.085 0.585   1.075  -0.697 C36  XNE 28 
XNE C37  C28 C 0 1 Y N N N N N -21.964 -14.933 12.283 -0.581  1.712  -1.013 C37  XNE 29 
XNE C38  C29 C 0 1 Y N N N N N -22.498 -14.254 13.391 -1.777  1.008  -1.065 C38  XNE 30 
XNE N11  N1  N 0 1 N N N N N N -30.562 -14.565 17.634 -10.730 2.731  -0.153 N11  XNE 31 
XNE N16  N2  N 0 1 Y N N N N N -22.604 -10.897 11.789 -0.359  -2.327 -0.173 N16  XNE 32 
XNE N27  N3  N 0 1 N N N N N N -18.939 -14.048 4.508  7.491   1.163  0.086  N27  XNE 33 
XNE N33  N4  N 0 1 Y N N N N N -21.373 -13.523 6.589  4.782   0.101  1.309  N33  XNE 34 
XNE O03  O2  O 0 1 N N N N N N -24.489 -12.629 14.967 -4.214  -0.173 -0.624 O03  XNE 35 
XNE O05  O3  O 0 1 N N N N N N -25.459 -11.392 13.355 -5.362  -1.851 0.266  O05  XNE 36 
XNE O20  O4  O 0 1 N N N N N N -22.915 -9.442  8.638  2.846   -3.770 0.635  O20  XNE 37 
XNE O30  O5  O 0 1 N N N N N N -17.642 -16.387 3.454  8.539   3.766  -0.056 O30  XNE 38 
XNE H1   H1  H 0 1 N N N N N N -22.681 -7.647  9.984  1.442   -5.658 0.774  H1   XNE 39 
XNE H131 H2  H 0 0 N N N N N N -25.715 -14.056 16.228 -7.663  -1.359 1.114  H131 XNE 40 
XNE H121 H3  H 0 0 N N N N N N -27.683 -15.313 16.984 -9.585  0.111  1.558  H121 XNE 41 
XNE H101 H4  H 0 0 N N N N N N -31.205 -14.724 15.665 -10.362 2.378  1.885  H101 XNE 42 
XNE H102 H5  H 0 0 N N N N N N -30.180 -16.074 16.258 -9.479  3.757  1.187  H102 XNE 43 
XNE H013 H6  H 0 0 N N N N N N -22.749 -11.785 16.657 -3.265  -0.956 -3.004 H013 XNE 44 
XNE H012 H7  H 0 0 N N N N N N -22.325 -13.417 16.037 -2.448  -2.424 -2.417 H012 XNE 45 
XNE H011 H8  H 0 0 N N N N N N -21.328 -11.994 15.578 -4.217  -2.276 -2.283 H011 XNE 46 
XNE H021 H9  H 0 0 N N N N N N -23.276 -11.042 14.373 -3.123  -1.871 -0.095 H021 XNE 47 
XNE H071 H10 H 0 0 N N N N N N -28.186 -11.871 13.478 -5.544  1.959  -0.588 H071 XNE 48 
XNE H081 H11 H 0 0 N N N N N N -30.192 -12.932 14.505 -7.477  3.411  -0.135 H081 XNE 49 
XNE H231 H12 H 0 0 N N N N N N -20.002 -10.460 8.546  3.705   -2.200 -1.548 H231 XNE 50 
XNE H241 H13 H 0 0 N N N N N N -19.142 -11.001 6.281  6.103   -1.676 -1.174 H241 XNE 51 
XNE H262 H14 H 0 0 N N N N N N -19.569 -12.089 4.202  7.334   -0.012 1.821  H262 XNE 52 
XNE H261 H15 H 0 0 N N N N N N -20.846 -13.345 4.064  7.769   -0.904 0.343  H261 XNE 53 
XNE H282 H16 H 0 0 N N N N N N -20.317 -15.425 3.892  7.105   2.387  1.751  H282 XNE 54 
XNE H281 H17 H 0 0 N N N N N N -19.963 -15.395 5.653  5.712   2.116  0.676  H281 XNE 55 
XNE H292 H18 H 0 0 N N N N N N -19.216 -17.404 4.264  6.756   3.504  -1.069 H292 XNE 56 
XNE H291 H19 H 0 0 N N N N N N -18.064 -16.670 5.431  6.646   4.426  0.450  H291 XNE 57 
XNE H311 H20 H 0 0 N N N N N N -18.280 -15.481 1.760  10.327  2.886  -0.611 H311 XNE 58 
XNE H312 H21 H 0 0 N N N N N N -16.657 -14.999 2.359  8.953   2.586  -1.702 H312 XNE 59 
XNE H321 H22 H 0 0 N N N N N N -17.463 -13.252 3.358  9.444   0.553  -0.400 H321 XNE 60 
XNE H322 H23 H 0 0 N N N N N N -19.019 -13.593 2.527  9.296   1.468  1.120  H322 XNE 61 
XNE H341 H24 H 0 0 N N N N N N -22.493 -13.921 8.307  2.779   0.305  1.814  H341 XNE 62 
XNE H361 H25 H 0 0 N N N N N N -21.264 -14.816 10.248 1.511   1.629  -0.658 H361 XNE 63 
XNE H371 H26 H 0 0 N N N N N N -21.769 -15.993 12.359 -0.573  2.771  -1.225 H371 XNE 64 
XNE H381 H27 H 0 0 N N N N N N -22.755 -14.808 14.281 -2.691  1.525  -1.317 H381 XNE 65 
XNE H111 H28 H 0 0 N N N N N N -31.374 -15.022 17.997 -11.017 1.791  -0.381 H111 XNE 66 
XNE H112 H30 H 0 0 N N N N N N -29.768 -14.802 18.194 -11.530 3.325  0.007  H112 XNE 67 
XNE H161 H31 H 0 0 N N N N N N -22.925 -10.173 12.400 -1.017  -3.039 -0.138 H161 XNE 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XNE C31 C32  SING N N 1  
XNE C31 O30  SING N N 2  
XNE C32 N27  SING N N 3  
XNE O30 C29  SING N N 4  
XNE C29 C28  SING N N 5  
XNE N27 C26  SING N N 6  
XNE N27 C28  SING N N 7  
XNE C26 C25  SING N N 8  
XNE C25 N33  DOUB Y N 9  
XNE C25 C24  SING Y N 10 
XNE N33 C34  SING Y N 11 
XNE C24 C23  DOUB Y N 12 
XNE C34 C22  DOUB Y N 13 
XNE C23 C22  SING Y N 14 
XNE C22 C21  SING N N 15 
XNE O20 C18  DOUB N N 16 
XNE C18 C17  SING N N 17 
XNE C18 O19  SING N N 18 
XNE C21 C17  DOUB Y N 19 
XNE C21 C35  SING Y N 20 
XNE C17 N16  SING Y N 21 
XNE C35 C36  DOUB Y N 22 
XNE C35 C15  SING Y N 23 
XNE C36 C37  SING Y N 24 
XNE N16 C15  SING Y N 25 
XNE C15 C14  DOUB Y N 26 
XNE C37 C38  DOUB Y N 27 
XNE O05 C04  DOUB N N 28 
XNE C14 C38  SING Y N 29 
XNE C14 C02  SING N N 30 
XNE C04 C06  SING N N 31 
XNE C04 O03  SING N N 32 
XNE C07 C06  DOUB Y N 33 
XNE C07 C08  SING Y N 34 
XNE C02 O03  SING N N 35 
XNE C02 C01  SING N N 36 
XNE C06 C13  SING Y N 37 
XNE C08 C09  DOUB Y N 38 
XNE C09 C12  SING Y N 39 
XNE C09 C10  SING N N 40 
XNE C13 C12  DOUB Y N 41 
XNE C10 N11  SING N N 42 
XNE O19 H1   SING N N 43 
XNE C13 H131 SING N N 44 
XNE C12 H121 SING N N 45 
XNE C10 H101 SING N N 46 
XNE C10 H102 SING N N 47 
XNE C01 H013 SING N N 48 
XNE C01 H012 SING N N 49 
XNE C01 H011 SING N N 50 
XNE C02 H021 SING N N 51 
XNE C07 H071 SING N N 52 
XNE C08 H081 SING N N 53 
XNE C23 H231 SING N N 54 
XNE C24 H241 SING N N 55 
XNE C26 H262 SING N N 56 
XNE C26 H261 SING N N 57 
XNE C28 H282 SING N N 58 
XNE C28 H281 SING N N 59 
XNE C29 H292 SING N N 60 
XNE C29 H291 SING N N 61 
XNE C31 H311 SING N N 62 
XNE C31 H312 SING N N 63 
XNE C32 H321 SING N N 64 
XNE C32 H322 SING N N 65 
XNE C34 H341 SING N N 66 
XNE C36 H361 SING N N 67 
XNE C37 H371 SING N N 68 
XNE C38 H381 SING N N 69 
XNE N11 H111 SING N N 70 
XNE N11 H112 SING N N 71 
XNE N16 H161 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XNE InChI            InChI                1.06  "InChI=1S/C29H30N4O5/c1-18(38-29(36)20-7-5-19(15-30)6-8-20)23-3-2-4-24-25(27(28(34)35)32-26(23)24)21-9-10-22(31-16-21)17-33-11-13-37-14-12-33/h2-10,16,18,32H,11-15,17,30H2,1H3,(H,34,35)/t18-/m0/s1" 
XNE InChIKey         InChI                1.06  GGOSPUPUTKUIJH-SFHVURJKSA-N                                                                                                                                                                           
XNE SMILES_CANONICAL CACTVS               3.385 "C[C@H](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4"                                                                                                                               
XNE SMILES           CACTVS               3.385 "C[CH](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(CN5CCOCC5)nc4"                                                                                                                                
XNE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN"                                                                                                                              
XNE SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(nc3)CN4CCOCC4)C(=O)O)OC(=O)c5ccc(cc5)CN"                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           XNE 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[6-(morpholin-4-ylmethyl)pyridin-3-yl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XNE "Create component" 2023-06-08 PDBE 
XNE "Initial release"  2024-06-26 RCSB 
# 
