data_VPE
# 
_chem_comp.id                                    VPE 
_chem_comp.name                                  "(3S)-3-methyl-5-oxo-5-[(1,3-thiazol-2-yl)amino]pentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 N2 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        228.268 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VPE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FNP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VPE N1  N1  N 0 1 Y N N -1.794 11.868 -34.630 3.886  -1.177 0.008  N1  VPE 1  
VPE C7  C1  C 0 1 N N N -6.896 16.129 -33.121 -3.444 -0.893 -0.045 C7  VPE 2  
VPE C8  C2  C 0 1 N N N -7.387 14.701 -32.694 -4.543 0.123  -0.222 C8  VPE 3  
VPE O1  O1  O 0 1 N N N -7.217 13.772 -33.512 -4.273 1.298  -0.291 O1  VPE 4  
VPE C1  C3  C 0 1 N N S -5.606 16.003 -33.930 -2.093 -0.178 0.017  C1  VPE 5  
VPE C5  C4  C 0 1 Y N N -0.817 11.613 -35.593 4.956  -0.406 -0.056 C5  VPE 6  
VPE C6  C5  C 0 1 Y N N -0.075 12.686 -35.970 4.695  0.900  -0.138 C6  VPE 7  
VPE C4  C6  C 0 1 Y N N -1.746 13.171 -34.310 2.734  -0.584 -0.017 C4  VPE 8  
VPE C3  C7  C 0 1 N N N -3.245 14.992 -33.842 0.364  -0.513 0.008  C3  VPE 9  
VPE C2  C8  C 0 1 N N N -4.478 15.415 -33.087 -0.969 -1.214 0.071  C2  VPE 10 
VPE O2  O2  O 0 1 N N N -7.920 14.604 -31.548 -5.821 -0.279 -0.303 O2  VPE 11 
VPE C   C9  C 0 1 N N N -5.162 17.383 -34.416 -2.038 0.700  1.269  C   VPE 12 
VPE O   O3  O 0 1 N N N -2.821 15.632 -34.777 0.410  0.696  -0.072 O   VPE 13 
VPE N   N2  N 0 1 N N N -2.579 13.821 -33.432 1.504  -1.230 0.041  N   VPE 14 
VPE S   S1  S 0 1 Y N N -0.512 14.127 -35.170 2.946  1.109  -0.130 S   VPE 15 
VPE H1  H1  H 0 1 N N N -6.708 16.736 -32.223 -3.605 -1.446 0.880  H1  VPE 16 
VPE H2  H2  H 0 1 N N N -7.669 16.614 -33.736 -3.450 -1.585 -0.887 H2  VPE 17 
VPE H3  H3  H 0 1 N N N -5.786 15.353 -34.799 -1.971 0.445  -0.869 H3  VPE 18 
VPE H4  H4  H 0 1 N N N -0.661 10.629 -36.010 5.961  -0.801 -0.042 H4  VPE 19 
VPE H5  H5  H 0 1 N N N 0.715  12.632 -36.705 5.428  1.691  -0.199 H5  VPE 20 
VPE H6  H6  H 0 1 N N N -4.178 16.174 -32.349 -1.039 -1.778 1.001  H6  VPE 21 
VPE H7  H7  H 0 1 N N N -4.873 14.531 -32.564 -1.062 -1.895 -0.775 H7  VPE 22 
VPE H8  H8  H 0 1 N N N -8.179 13.703 -31.394 -6.491 0.409  -0.416 H8  VPE 23 
VPE H9  H9  H 0 1 N N N -4.233 17.286 -34.998 -1.076 1.210  1.313  H9  VPE 24 
VPE H10 H10 H 0 1 N N N -5.948 17.819 -35.050 -2.839 1.439  1.230  H10 VPE 25 
VPE H11 H11 H 0 1 N N N -4.985 18.037 -33.550 -2.160 0.078  2.155  H11 VPE 26 
VPE H12 H12 H 0 1 N N N -2.712 13.465 -32.507 1.467  -2.197 0.105  H12 VPE 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VPE C6 C5  DOUB Y N 1  
VPE C6 S   SING Y N 2  
VPE C5 N1  SING Y N 3  
VPE S  C4  SING Y N 4  
VPE O  C3  DOUB N N 5  
VPE N1 C4  DOUB Y N 6  
VPE C  C1  SING N N 7  
VPE C4 N   SING N N 8  
VPE C1 C7  SING N N 9  
VPE C1 C2  SING N N 10 
VPE C3 N   SING N N 11 
VPE C3 C2  SING N N 12 
VPE O1 C8  DOUB N N 13 
VPE C7 C8  SING N N 14 
VPE C8 O2  SING N N 15 
VPE C7 H1  SING N N 16 
VPE C7 H2  SING N N 17 
VPE C1 H3  SING N N 18 
VPE C5 H4  SING N N 19 
VPE C6 H5  SING N N 20 
VPE C2 H6  SING N N 21 
VPE C2 H7  SING N N 22 
VPE O2 H8  SING N N 23 
VPE C  H9  SING N N 24 
VPE C  H10 SING N N 25 
VPE C  H11 SING N N 26 
VPE N  H12 SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VPE SMILES           ACDLabs              12.01 "O=C(CC(C)CC(=O)O)Nc1nccs1"                                                                                    
VPE InChI            InChI                1.06  "InChI=1S/C9H12N2O3S/c1-6(5-8(13)14)4-7(12)11-9-10-2-3-15-9/h2-3,6H,4-5H2,1H3,(H,13,14)(H,10,11,12)/t6-/m0/s1" 
VPE InChIKey         InChI                1.06  XBVSCWDDCLBNGM-LURJTMIESA-N                                                                                    
VPE SMILES_CANONICAL CACTVS               3.385 "C[C@H](CC(O)=O)CC(=O)Nc1sccn1"                                                                                
VPE SMILES           CACTVS               3.385 "C[CH](CC(O)=O)CC(=O)Nc1sccn1"                                                                                 
VPE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CC(=O)Nc1nccs1)CC(=O)O"                                                                               
VPE SMILES           "OpenEye OEToolkits" 2.0.7 "CC(CC(=O)Nc1nccs1)CC(=O)O"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VPE "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-methyl-5-oxo-5-[(1,3-thiazol-2-yl)amino]pentanoic acid"            
VPE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-methyl-5-oxidanylidene-5-(1,3-thiazol-2-ylamino)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VPE "Create component" 2022-09-02 RCSB 
VPE "Initial release"  2022-11-02 RCSB 
# 
