data_VBE
#

_chem_comp.id                                   VBE
_chem_comp.name                                 "1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-N-[(2S)-2-phenylpropyl]pyridine-3-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-04
_chem_comp.pdbx_modified_date                   2021-07-16
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       355.431
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VBE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7OES
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VBE  C10  C1   C  0  1  Y  N  N  41.443  18.701  10.358   4.128  -0.479   0.262  C10  VBE   1  
VBE  C13  C2   C  0  1  Y  N  N  44.155  18.443   9.763   6.824  -0.098  -0.216  C13  VBE   2  
VBE  C15  C3   C  0  1  Y  N  N  42.030  17.447  10.248   4.960  -0.071   1.286  C15  VBE   3  
VBE  C20  C4   C  0  1  N  N  N  39.992  15.681   6.157  -3.652  -1.780   0.776  C20  VBE   4  
VBE  C21  C5   C  0  1  N  N  N  39.097  14.529   5.778  -4.230  -2.744   1.780  C21  VBE   5  
VBE  C22  C6   C  0  1  N  N  N  41.429  15.446   6.194  -4.494  -0.898   0.073  C22  VBE   6  
VBE  C26  C7   C  0  1  N  N  N  41.706  17.758   6.843  -2.660   0.014  -1.064  C26  VBE   7  
VBE  C01  C8   C  0  1  N  N  N  35.514  22.599   7.305  -1.519   4.549   0.499  C01  VBE   8  
VBE  N02  N1   N  0  1  N  N  N  36.797  22.281   7.904  -1.128   3.276   1.110  N02  VBE   9  
VBE  C03  C9   C  0  1  N  N  N  37.298  21.052   7.907  -0.564   2.312   0.355  C03  VBE  10  
VBE  O04  O1   O  0  1  N  N  N  36.715  20.096   7.404  -0.382   2.498  -0.829  O04  VBE  11  
VBE  C05  C10  C  0  1  N  N  N  38.646  20.869   8.572  -0.162   1.003   0.983  C05  VBE  12  
VBE  N06  N2   N  0  1  N  N  N  39.235  19.567   8.337   0.422   0.130  -0.038  N06  VBE  13  
VBE  C07  C11  C  0  1  N  N  N  39.131  18.577   9.412   1.844   0.246  -0.375  C07  VBE  14  
VBE  C08  C12  C  0  1  N  N  S  39.963  18.853  10.677   2.658  -0.688   0.522  C08  VBE  15  
VBE  C09  C13  C  0  1  N  N  N  39.527  17.955  11.834   2.287  -2.140   0.217  C09  VBE  16  
VBE  C11  C14  C  0  1  Y  N  N  42.234  19.822  10.153   4.642  -0.692  -1.004  C11  VBE  17  
VBE  C12  C15  C  0  1  Y  N  N  43.581  19.694   9.859   5.990  -0.501  -1.243  C12  VBE  18  
VBE  C14  C16  C  0  1  Y  N  N  43.380  17.320   9.960   6.308   0.121   1.047  C14  VBE  19  
VBE  C16  C17  C  0  1  N  N  N  39.755  19.332   7.119  -0.348  -0.779  -0.669  C16  VBE  20  
VBE  O17  O2   O  0  1  N  N  N  39.782  20.180   6.237   0.152  -1.555  -1.460  O17  VBE  21  
VBE  C18  C18  C  0  1  N  N  N  40.370  17.989   6.829  -1.796  -0.832  -0.398  C18  VBE  22  
VBE  C19  C19  C  0  1  N  N  N  39.510  16.907   6.458  -2.312  -1.752   0.547  C19  VBE  23  
VBE  O23  O3   O  0  1  N  N  N  41.956  14.368   5.942  -5.696  -0.919   0.276  O23  VBE  24  
VBE  N24  N3   N  0  1  N  N  N  42.233  16.538   6.541  -3.983  -0.032  -0.820  N24  VBE  25  
VBE  C25  C20  C  0  1  N  N  N  43.682  16.329   6.584  -4.880   0.876  -1.539  C25  VBE  26  
VBE  H1   H1   H  0  1  N  N  N  45.206  18.344   9.535   7.877   0.051  -0.403  H1   VBE  27  
VBE  H2   H2   H  0  1  N  N  N  41.428  16.561  10.388   4.557   0.100   2.274  H2   VBE  28  
VBE  H3   H3   H  0  1  N  N  N  38.048  14.858   5.794  -5.311  -2.614   1.828  H3   VBE  29  
VBE  H4   H4   H  0  1  N  N  N  39.356  14.181   4.767  -4.000  -3.765   1.478  H4   VBE  30  
VBE  H5   H5   H  0  1  N  N  N  39.234  13.707   6.496  -3.797  -2.549   2.762  H5   VBE  31  
VBE  H6   H6   H  0  1  N  N  N  42.374  18.566   7.102  -2.271   0.717  -1.785  H6   VBE  32  
VBE  H7   H7   H  0  1  N  N  N  35.310  23.673   7.424  -0.641   5.031   0.069  H7   VBE  33  
VBE  H8   H8   H  0  1  N  N  N  35.536  22.346   6.235  -2.254   4.365  -0.285  H8   VBE  34  
VBE  H9   H9   H  0  1  N  N  N  34.723  22.018   7.803  -1.954   5.198   1.259  H9   VBE  35  
VBE  H10  H10  H  0  1  N  N  N  37.324  23.016   8.331  -1.274   3.128   2.057  H10  VBE  36  
VBE  H11  H11  H  0  1  N  N  N  39.332  21.636   8.185   0.573   1.187   1.767  H11  VBE  37  
VBE  H12  H12  H  0  1  N  N  N  38.520  21.003   9.656  -1.040   0.521   1.414  H12  VBE  38  
VBE  H13  H13  H  0  1  N  N  N  38.074  18.518   9.712   1.993  -0.031  -1.419  H13  VBE  39  
VBE  H14  H14  H  0  1  N  N  N  39.451  17.606   9.006   2.171   1.275  -0.222  H14  VBE  40  
VBE  H15  H15  H  0  1  N  N  N  39.785  19.897  10.974   2.440  -0.469   1.567  H15  VBE  41  
VBE  H16  H16  H  0  1  N  N  N  40.139  18.176  12.721   2.505  -2.359  -0.828  H16  VBE  42  
VBE  H17  H17  H  0  1  N  N  N  38.468  18.142  12.064   2.867  -2.806   0.856  H17  VBE  43  
VBE  H18  H18  H  0  1  N  N  N  39.660  16.901  11.550   1.224  -2.291   0.406  H18  VBE  44  
VBE  H19  H19  H  0  1  N  N  N  41.794  20.806  10.224   3.991  -1.007  -1.806  H19  VBE  45  
VBE  H20  H20  H  0  1  N  N  N  44.184  20.576   9.704   6.393  -0.672  -2.230  H20  VBE  46  
VBE  H21  H21  H  0  1  N  N  N  43.826  16.339   9.890   6.959   0.436   1.849  H21  VBE  47  
VBE  H22  H22  H  0  1  N  N  N  38.444  17.075   6.417  -1.651  -2.422   1.077  H22  VBE  48  
VBE  H23  H23  H  0  1  N  N  N  44.180  17.267   6.869  -5.907   0.701  -1.219  H23  VBE  49  
VBE  H24  H24  H  0  1  N  N  N  43.918  15.549   7.323  -4.602   1.908  -1.322  H24  VBE  50  
VBE  H25  H25  H  0  1  N  N  N  44.036  16.013   5.592  -4.797   0.695  -2.610  H25  VBE  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VBE  C21  C20  SING  N  N   1  
VBE  O23  C22  DOUB  N  N   2  
VBE  C20  C22  SING  N  N   3  
VBE  C20  C19  DOUB  N  N   4  
VBE  C22  N24  SING  N  N   5  
VBE  O17  C16  DOUB  N  N   6  
VBE  C19  C18  SING  N  N   7  
VBE  N24  C25  SING  N  N   8  
VBE  N24  C26  SING  N  N   9  
VBE  C18  C26  DOUB  N  N  10  
VBE  C18  C16  SING  N  N  11  
VBE  C16  N06  SING  N  N  12  
VBE  C01  N02  SING  N  N  13  
VBE  O04  C03  DOUB  N  N  14  
VBE  N02  C03  SING  N  N  15  
VBE  C03  C05  SING  N  N  16  
VBE  N06  C05  SING  N  N  17  
VBE  N06  C07  SING  N  N  18  
VBE  C07  C08  SING  N  N  19  
VBE  C13  C12  DOUB  Y  N  20  
VBE  C13  C14  SING  Y  N  21  
VBE  C12  C11  SING  Y  N  22  
VBE  C14  C15  DOUB  Y  N  23  
VBE  C11  C10  DOUB  Y  N  24  
VBE  C15  C10  SING  Y  N  25  
VBE  C10  C08  SING  N  N  26  
VBE  C08  C09  SING  N  N  27  
VBE  C13  H1   SING  N  N  28  
VBE  C15  H2   SING  N  N  29  
VBE  C21  H3   SING  N  N  30  
VBE  C21  H4   SING  N  N  31  
VBE  C21  H5   SING  N  N  32  
VBE  C26  H6   SING  N  N  33  
VBE  C01  H7   SING  N  N  34  
VBE  C01  H8   SING  N  N  35  
VBE  C01  H9   SING  N  N  36  
VBE  N02  H10  SING  N  N  37  
VBE  C05  H11  SING  N  N  38  
VBE  C05  H12  SING  N  N  39  
VBE  C07  H13  SING  N  N  40  
VBE  C07  H14  SING  N  N  41  
VBE  C08  H15  SING  N  N  42  
VBE  C09  H16  SING  N  N  43  
VBE  C09  H17  SING  N  N  44  
VBE  C09  H18  SING  N  N  45  
VBE  C11  H19  SING  N  N  46  
VBE  C12  H20  SING  N  N  47  
VBE  C14  H21  SING  N  N  48  
VBE  C19  H22  SING  N  N  49  
VBE  C25  H23  SING  N  N  50  
VBE  C25  H24  SING  N  N  51  
VBE  C25  H25  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VBE  InChI             InChI                 1.03   "InChI=1S/C20H25N3O3/c1-14-10-17(12-22(4)19(14)25)20(26)23(13-18(24)21-3)11-15(2)16-8-6-5-7-9-16/h5-10,12,15H,11,13H2,1-4H3,(H,21,24)/t15-/m1/s1"  
VBE  InChIKey          InChI                 1.03   HZVLFNBTVSYMSI-OAHLLOKOSA-N  
VBE  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)CN(C[C@@H](C)c1ccccc1)C(=O)C2=CN(C)C(=O)C(=C2)C"  
VBE  SMILES            CACTVS                3.385  "CNC(=O)CN(C[CH](C)c1ccccc1)C(=O)C2=CN(C)C(=O)C(=C2)C"  
VBE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)C(=O)N(C[C@@H](C)c2ccccc2)CC(=O)NC"  
VBE  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1=CC(=CN(C1=O)C)C(=O)N(CC(C)c2ccccc2)CC(=O)NC"  
#
_pdbx_chem_comp_identifier.comp_id          VBE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1,5-dimethyl-~{N}-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-~{N}-[(2~{S})-2-phenylpropyl]pyridine-3-carboxamide"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VBE
_pdbx_chem_comp_synonyms.name        "1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VBE  "Create component"  2021-05-04  PDBE  
VBE  "Initial release"   2021-07-21  RCSB  
##
