data_V9E
# 
_chem_comp.id                                    V9E 
_chem_comp.name                                  "4-chloranyl-6-[1-methyl-4-(thiophen-2-ylmethyl)pyrazol-3-yl]pyrimidin-2-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H12 Cl N5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-27 
_chem_comp.pdbx_modified_date                    2023-12-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        305.786 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V9E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CO7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V9E C01  C1  C  0 1 Y N N N N N -15.098 -26.201 2.100  3.775  -0.803 0.142  C01  V9E 1  
V9E C02  C2  C  0 1 Y N N N N N -14.106 -25.722 3.254  4.102  -1.810 -0.749 C02  V9E 2  
V9E C03  C3  C  0 1 Y N N N N N -13.715 -24.354 2.993  3.091  -2.612 -1.087 C03  V9E 3  
V9E C05  C4  C  0 1 Y N N N N N -15.255 -25.115 1.176  2.500  -0.789 0.532  C05  V9E 4  
V9E C06  C5  C  0 1 Y N N N N N -18.422 -24.265 0.697  0.115  1.498  0.114  C06  V9E 5  
V9E C07  C6  C  0 1 Y N N N N N -17.599 -25.284 0.337  1.378  1.392  0.729  C07  V9E 6  
V9E C08  C7  C  0 1 Y N N N N N -18.316 -26.413 0.447  2.043  2.548  0.513  C08  V9E 7  
V9E C12  C8  C  0 1 Y N N N N N -16.535 -20.836 0.517  -1.562 -1.761 0.229  C12  V9E 8  
V9E C14  C9  C  0 1 Y N N N N N -18.086 -22.776 0.774  -0.940 0.457  0.103  C14  V9E 9  
V9E C15  C10 C  0 1 Y N N N N N -19.130 -21.882 1.276  -2.283 0.810  -0.051 C15  V9E 10 
V9E C16  C11 C  0 1 Y N N N N N -18.846 -20.458 1.376  -3.234 -0.198 -0.055 C16  V9E 11 
V9E C17  C12 C  0 1 N N N N N N -16.127 -25.140 -0.075 1.895  0.201  1.494  C17  V9E 12 
V9E C18  C13 C  0 1 N N N N N N -20.678 -27.033 1.048  1.574  4.713  -0.663 C18  V9E 13 
V9E N09  N1  N  0 1 Y N N N N N -19.549 -26.101 0.817  1.242  3.361  -0.210 N09  V9E 14 
V9E N10  N2  N  0 1 Y N N N N N -19.614 -24.764 1.018  0.036  2.688  -0.446 N10  V9E 15 
V9E N11  N3  N  0 1 Y N N N N N -17.583 -19.931 1.005  -2.844 -1.456 0.085  N11  V9E 16 
V9E N13  N4  N  0 1 Y N N N N N -16.803 -22.239 0.420  -0.623 -0.829 0.239  N13  V9E 17 
V9E N19  N5  N  0 1 N N N N N N -15.258 -20.288 0.204  -1.198 -3.088 0.378  N19  V9E 18 
V9E S04  S1  S  0 1 Y N N N N N -14.402 -23.897 1.671  1.629  -2.099 -0.255 S04  V9E 19 
V9E CL20 CL1 CL 0 0 N N N N N N -20.068 -19.371 1.916  -4.917 0.185  -0.242 CL20 V9E 20 
V9E H011 H1  H  0 0 N N N N N N -15.568 -27.171 2.027  4.499  -0.085 0.498  H011 V9E 21 
V9E H021 H2  H  0 0 N N N N N N -13.780 -26.320 4.092  5.100  -1.937 -1.142 H021 V9E 22 
V9E H031 H3  H  0 0 N N N N N N -13.061 -23.754 3.608  3.160  -3.448 -1.768 H031 V9E 23 
V9E H081 H4  H  0 0 N N N N N N -17.948 -27.412 0.264  3.039  2.781  0.858  H081 V9E 24 
V9E H151 H5  H  0 0 N N N N N N -20.094 -22.272 1.567  -2.573 1.844  -0.162 H151 V9E 25 
V9E H172 H6  H  0 0 N N N N N N -15.837 -25.992 -0.708 1.073  -0.271 2.032  H172 V9E 26 
V9E H171 H7  H  0 0 N N N N N N -15.992 -24.203 -0.636 2.655  0.527  2.204  H171 V9E 27 
V9E H181 H8  H  0 0 N N N N N N -21.554 -26.469 1.401  2.047  4.662  -1.644 H181 V9E 28 
V9E H182 H9  H  0 0 N N N N N N -20.928 -27.547 0.108  0.663  5.308  -0.730 H182 V9E 29 
V9E H183 H10 H  0 0 N N N N N N -20.391 -27.776 1.807  2.259  5.176  0.047  H183 V9E 30 
V9E H191 H11 H  0 0 N N N N N N -14.639 -21.022 -0.074 -1.877 -3.780 0.377  H191 V9E 31 
V9E H192 H12 H  0 0 N N N N N N -15.352 -19.630 -0.543 -0.263 -3.325 0.484  H192 V9E 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V9E C17 C07  SING N N 1  
V9E C17 C05  SING N N 2  
V9E N19 C12  SING N N 3  
V9E C07 C08  DOUB Y N 4  
V9E C07 C06  SING Y N 5  
V9E N13 C12  DOUB Y N 6  
V9E N13 C14  SING Y N 7  
V9E C08 N09  SING Y N 8  
V9E C12 N11  SING Y N 9  
V9E C06 C14  SING N N 10 
V9E C06 N10  DOUB Y N 11 
V9E C14 C15  DOUB Y N 12 
V9E N09 N10  SING Y N 13 
V9E N09 C18  SING N N 14 
V9E N11 C16  DOUB Y N 15 
V9E C05 S04  SING Y N 16 
V9E C05 C01  DOUB Y N 17 
V9E C15 C16  SING Y N 18 
V9E C16 CL20 SING N N 19 
V9E S04 C03  SING Y N 20 
V9E C01 C02  SING Y N 21 
V9E C03 C02  DOUB Y N 22 
V9E C01 H011 SING N N 23 
V9E C02 H021 SING N N 24 
V9E C03 H031 SING N N 25 
V9E C08 H081 SING N N 26 
V9E C15 H151 SING N N 27 
V9E C17 H172 SING N N 28 
V9E C17 H171 SING N N 29 
V9E C18 H181 SING N N 30 
V9E C18 H182 SING N N 31 
V9E C18 H183 SING N N 32 
V9E N19 H191 SING N N 33 
V9E N19 H192 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V9E InChI            InChI                1.06  "InChI=1S/C13H12ClN5S/c1-19-7-8(5-9-3-2-4-20-9)12(18-19)10-6-11(14)17-13(15)16-10/h2-4,6-7H,5H2,1H3,(H2,15,16,17)" 
V9E InChIKey         InChI                1.06  VPCGXMWBHSCODI-UHFFFAOYSA-N                                                                                        
V9E SMILES_CANONICAL CACTVS               3.385 "Cn1cc(Cc2sccc2)c(n1)c3cc(Cl)nc(N)n3"                                                                              
V9E SMILES           CACTVS               3.385 "Cn1cc(Cc2sccc2)c(n1)c3cc(Cl)nc(N)n3"                                                                              
V9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc(c(n1)c2cc(nc(n2)N)Cl)Cc3cccs3"                                                                              
V9E SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1cc(c(n1)c2cc(nc(n2)N)Cl)Cc3cccs3"                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           V9E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-chloranyl-6-[1-methyl-4-(thiophen-2-ylmethyl)pyrazol-3-yl]pyrimidin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V9E "Create component" 2023-02-27 PDBE 
V9E "Initial release"  2024-01-03 RCSB 
# 
