data_S8E
# 
_chem_comp.id                                    S8E 
_chem_comp.name                                  "5-[[(2-bromoethylamino)-(ethylamino)phosphoryl]oxymethyl]-1-methyl-~{N},~{N}-bis(oxidanyl)imidazol-2-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H19 Br N5 O4 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-11 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S8E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7AWS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S8E C10  C1  C  0 1 N N N N N N 8.993  0.765  22.620 -1.742 -0.566 -0.721 C10  S8E 1  
S8E C15  C2  C  0 1 N N N N N N 5.089  -0.445 20.938 3.348  -0.030 0.362  C15  S8E 2  
S8E C20  C3  C  0 1 N N N N N N 7.738  -2.818 18.452 -0.277 -3.661 0.980  C20  S8E 3  
S8E C01  C4  C  0 1 N N N N N N 11.814 1.973  22.937 -4.712 -1.350 -1.393 C01  S8E 4  
S8E C03  C5  C  0 1 Y N N N N N 10.308 -0.006 22.601 -2.994 0.130  -0.254 C03  S8E 5  
S8E C04  C6  C  0 1 Y N N N N N 10.477 -1.373 22.444 -3.059 1.218  0.533  C04  S8E 6  
S8E C06  C7  C  0 1 Y N N N N N 12.495 -0.485 22.680 -5.103 0.668  0.070  C06  S8E 7  
S8E C16  C8  C  0 1 N N N N N N 5.365  1.056  20.900 4.256  1.201  0.403  C16  S8E 8  
S8E C19  C9  C  0 1 N N N N N N 8.096  -1.788 19.520 0.656  -2.451 1.047  C19  S8E 9  
S8E N02  N1  N  0 1 Y N N N N N 11.553 0.557  22.753 -4.290 -0.225 -0.556 N02  S8E 10 
S8E N05  N2  N  0 1 Y N N N N N 11.835 -1.658 22.497 -4.353 1.528  0.719  N05  S8E 11 
S8E N07  N3  N  0 1 N N N N N N 13.929 -0.401 22.793 -6.487 0.672  0.026  N07  S8E 12 
S8E N14  N4  N  0 1 N N N N N N 5.712  -1.017 22.112 1.957  0.379  0.602  N14  S8E 13 
S8E N18  N5  N  0 1 N N N N N N 7.850  -2.319 20.850 1.021  -2.037 -0.314 N18  S8E 14 
S8E O08  O1  O  0 1 N N N N N N 14.518 0.587  23.584 -7.049 -0.133 1.111  O08  S8E 15 
S8E O09  O2  O  0 1 N N N N N N 14.708 -1.354 22.133 -7.009 2.039  0.063  O09  S8E 16 
S8E O11  O3  O  0 1 N N N N N N 8.091  0.202  21.717 -0.598 0.107  -0.191 O11  S8E 17 
S8E O13  O4  O  0 1 N N N N N N 7.841  -1.717 23.393 1.287  0.012  -1.867 O13  S8E 18 
S8E P12  P1  P  0 1 N N R N N N 7.391  -1.241 22.086 0.913  -0.366 -0.486 P12  S8E 19 
S8E BR1  BR1 BR 0 0 N N N N N N 4.066  1.890  19.724 6.116  0.653  0.081  BR1  S8E 20 
S8E H102 H1  H  0 0 N N N N N N 9.182  1.812  22.340 -1.749 -1.599 -0.373 H102 S8E 21 
S8E H101 H2  H  0 0 N N N N N N 8.565  0.728  23.632 -1.701 -0.549 -1.810 H101 S8E 22 
S8E H152 H3  H  0 0 N N N N N N 4.003  -0.618 20.977 3.423  -0.505 -0.616 H152 S8E 23 
S8E H151 H4  H  0 0 N N N N N N 5.503  -0.918 20.035 3.657  -0.736 1.133  H151 S8E 24 
S8E H203 H5  H  0 0 N N N N N N 7.932  -2.396 17.455 -1.178 -3.396 0.427  H203 S8E 25 
S8E H1   H6  H  0 1 N N N N N N 8.351  -3.720 18.593 0.231  -4.483 0.474  H1   S8E 26 
S8E H201 H7  H  0 0 N N N N N N 6.673  -3.081 18.538 -0.548 -3.968 1.990  H201 S8E 27 
S8E H012 H8  H  0 0 N N N N N N 12.898 2.137  23.031 -4.845 -2.236 -0.772 H012 S8E 28 
S8E H013 H9  H  0 0 N N N N N N 11.432 2.532  22.070 -5.655 -1.105 -1.882 H013 S8E 29 
S8E H011 H10 H  0 0 N N N N N N 11.309 2.323  23.850 -3.951 -1.546 -2.149 H011 S8E 30 
S8E H041 H11 H  0 0 N N N N N N 9.686  -2.095 22.304 -2.216 1.752  0.945  H041 S8E 31 
S8E H161 H12 H  0 0 N N N N N N 6.381  1.237  20.519 3.946  1.906  -0.368 H161 S8E 32 
S8E H162 H13 H  0 0 N N N N N N 5.273  1.476  21.912 4.181  1.675  1.381  H162 S8E 33 
S8E H191 H14 H  0 0 N N N N N N 9.160  -1.527 19.427 0.149  -1.629 1.553  H191 S8E 34 
S8E H192 H15 H  0 0 N N N N N N 7.483  -0.887 19.372 1.557  -2.716 1.600  H192 S8E 35 
S8E H141 H16 H  0 0 N N N N N N 5.503  -0.416 22.883 1.684  0.188  1.555  H141 S8E 36 
S8E H181 H17 H  0 0 N N N N N N 7.121  -2.999 20.766 1.943  -2.366 -0.557 H181 S8E 37 
S8E H081 H18 H  0 0 N N N N N N 13.842 1.143  23.952 -8.015 -0.160 1.121  H081 S8E 38 
S8E H091 H19 H  0 0 N N N N N N 15.628 -1.178 22.294 -7.974 2.092  0.034  H091 S8E 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S8E C20 C19  SING N N 1  
S8E C19 N18  SING N N 2  
S8E BR1 C16  SING N N 3  
S8E N18 P12  SING N N 4  
S8E C16 C15  SING N N 5  
S8E C15 N14  SING N N 6  
S8E O11 P12  SING N N 7  
S8E O11 C10  SING N N 8  
S8E P12 N14  SING N N 9  
S8E P12 O13  DOUB N N 10 
S8E O09 N07  SING N N 11 
S8E C04 N05  SING Y N 12 
S8E C04 C03  DOUB Y N 13 
S8E N05 C06  DOUB Y N 14 
S8E C03 C10  SING N N 15 
S8E C03 N02  SING Y N 16 
S8E C06 N02  SING Y N 17 
S8E C06 N07  SING N N 18 
S8E N02 C01  SING N N 19 
S8E N07 O08  SING N N 20 
S8E C10 H102 SING N N 21 
S8E C10 H101 SING N N 22 
S8E C15 H152 SING N N 23 
S8E C15 H151 SING N N 24 
S8E C20 H203 SING N N 25 
S8E C20 H1   SING N N 26 
S8E C20 H201 SING N N 27 
S8E C01 H012 SING N N 28 
S8E C01 H013 SING N N 29 
S8E C01 H011 SING N N 30 
S8E C04 H041 SING N N 31 
S8E C16 H161 SING N N 32 
S8E C16 H162 SING N N 33 
S8E C19 H191 SING N N 34 
S8E C19 H192 SING N N 35 
S8E N14 H141 SING N N 36 
S8E N18 H181 SING N N 37 
S8E O08 H081 SING N N 38 
S8E O09 H091 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S8E InChI            InChI                1.03  "InChI=1S/C9H19BrN5O4P/c1-3-12-20(18,13-5-4-10)19-7-8-6-11-9(14(8)2)15(16)17/h6,16-17H,3-5,7H2,1-2H3,(H2,12,13,18)/t20-/m1/s1" 
S8E InChIKey         InChI                1.03  GTMVCVDSEXJDHD-HXUWFJFHSA-N                                                                                                    
S8E SMILES_CANONICAL CACTVS               3.385 "CCN[P@](=O)(NCCBr)OCc1cnc(N(O)O)n1C"                                                                                          
S8E SMILES           CACTVS               3.385 "CCN[P](=O)(NCCBr)OCc1cnc(N(O)O)n1C"                                                                                           
S8E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN[P@](=O)(NCCBr)OCc1cnc(n1C)N(O)O"                                                                                          
S8E SMILES           "OpenEye OEToolkits" 2.0.7 "CCNP(=O)(NCCBr)OCc1cnc(n1C)N(O)O"                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           S8E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[[(2-bromoethylamino)-(ethylamino)phosphoryl]oxymethyl]-1-methyl-~{N},~{N}-bis(oxidanyl)imidazol-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S8E "Create component" 2020-11-11 PDBE 
S8E "Initial release"  2020-12-02 RCSB 
S8E "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S8E 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
