data_R7E
# 
_chem_comp.id                                    R7E 
_chem_comp.name                                  "5-[3-(aminomethyl)phenyl]-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]furan-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H22 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(5-(3'-aminomethyl)phenyl)furan-2-carboxamido-b-L-fucopyranose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-23 
_chem_comp.pdbx_modified_date                    2023-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        362.377 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R7E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BRO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R7E N1  N1  N 0 1 N N N 30.004 0.593  9.940  -1.364 -0.642 -0.089 N1  R7E 1  
R7E C4  C1  C 0 1 N N S 27.445 2.358  7.175  -5.220 0.997  0.365  C4  R7E 2  
R7E C5  C2  C 0 1 N N S 27.472 0.853  7.384  -4.713 -0.096 1.310  C5  R7E 3  
R7E C6  C3  C 0 1 N N N 26.071 0.289  7.417  -5.094 0.257  2.749  C6  R7E 4  
R7E C7  C4  C 0 1 N N N 30.265 -0.692 10.183 -0.770 -1.849 -0.008 C7  R7E 5  
R7E C8  C5  C 0 1 Y N N 30.670 -1.058 11.521 0.692  -1.946 0.010  C8  R7E 6  
R7E C10 C6  C 0 1 Y N N 31.344 -2.001 13.390 2.773  -2.740 0.075  C10 R7E 7  
R7E C13 C7  C 0 1 Y N N 32.099 -0.197 15.801 3.948  0.837  -0.127 C13 R7E 8  
R7E C15 C8  C 0 1 Y N N 31.477 1.650  17.173 6.338  0.989  -0.118 C15 R7E 9  
R7E C17 C9  C 0 1 Y N N 30.416 1.229  15.018 5.296  -1.163 -0.004 C17 R7E 10 
R7E C1  C10 C 0 1 N N S 29.444 0.979  8.710  -2.826 -0.544 -0.101 C1  R7E 11 
R7E O5  O1  O 0 1 N N N 28.116 0.605  8.653  -3.291 -0.192 1.203  O5  R7E 12 
R7E C3  C11 C 0 1 N N R 28.837 2.933  7.247  -4.783 0.668  -1.065 C3  R7E 13 
R7E O3  O2  O 0 1 N N N 28.837 4.352  7.105  -5.189 1.720  -1.943 O3  R7E 14 
R7E C2  C12 C 0 1 N N S 29.571 2.501  8.509  -3.258 0.530  -1.102 C2  R7E 15 
R7E O2  O3  O 0 1 N N N 30.939 2.939  8.492  -2.845 0.152  -2.417 O2  R7E 16 
R7E O4  O4  O 0 1 N N N 26.691 3.007  8.204  -4.671 2.258  0.754  O4  R7E 17 
R7E O7  O5  O 0 1 N N N 30.165 -1.571 9.293  -1.448 -2.858 0.051  O7  R7E 18 
R7E O8  O6  O 0 1 Y N N 30.748 -0.089 12.472 1.556  -0.910 -0.043 O8  R7E 19 
R7E C11 C13 C 0 1 Y N N 31.115 -0.709 13.626 2.815  -1.377 -0.004 C11 R7E 20 
R7E C9  C14 C 0 1 Y N N 31.032 -2.232 12.041 1.424  -3.110 0.090  C9  R7E 21 
R7E C12 C15 C 0 1 Y N N 31.177 0.110  14.835 4.040  -0.554 -0.046 C12 R7E 22 
R7E C16 C16 C 0 1 Y N N 30.565 2.009  16.167 6.437  -0.388 -0.032 C16 R7E 23 
R7E C14 C17 C 0 1 Y N N 32.262 0.541  16.970 5.097  1.599  -0.165 C14 R7E 24 
R7E C18 C18 C 0 1 N N N 33.241 -0.001 17.975 5.000  3.101  -0.259 C18 R7E 25 
R7E N2  N2  N 0 1 N N N 32.751 -1.233 18.804 4.958  3.674  1.093  N2  R7E 26 
R7E H1  H1  H 0 1 N N N 30.207 1.283  10.634 -0.824 0.162  -0.136 H1  R7E 27 
R7E H2  H2  H 0 1 N N N 27.012 2.577  6.188  -6.308 1.042  0.412  H2  R7E 28 
R7E H3  H3  H 0 1 N N N 28.038 0.381  6.567  -5.164 -1.050 1.038  H3  R7E 29 
R7E H4  H4  H 0 1 N N N 26.117 -0.799 7.569  -6.178 0.331  2.830  H4  R7E 30 
R7E H5  H5  H 0 1 N N N 25.509 0.751  8.242  -4.732 -0.521 3.421  H5  R7E 31 
R7E H6  H6  H 0 1 N N N 25.566 0.505  6.464  -4.643 1.211  3.021  H6  R7E 32 
R7E H7  H7  H 0 1 N N N 31.701 -2.731 14.101 3.622  -3.406 0.121  H7  R7E 33 
R7E H8  H8  H 0 1 N N N 32.733 -1.058 15.647 2.980  1.314  -0.164 H8  R7E 34 
R7E H9  H9  H 0 1 N N N 31.559 2.230  18.081 7.234  1.591  -0.148 H9  R7E 35 
R7E H10 H10 H 0 1 N N N 29.693 1.513  14.268 5.374  -2.239 0.063  H10 R7E 36 
R7E H11 H11 H 0 1 N N N 29.997 0.492  7.893  -3.252 -1.505 -0.392 H11 R7E 37 
R7E H12 H12 H 0 1 N N N 29.397 2.512  6.399  -5.242 -0.269 -1.380 H12 R7E 38 
R7E H13 H13 H 0 1 N N N 29.729 4.676  7.156  -4.945 1.577  -2.868 H13 R7E 39 
R7E H14 H14 H 0 1 N N N 29.066 2.981  9.360  -2.800 1.482  -0.835 H14 R7E 40 
R7E H15 H15 H 0 1 N N N 31.372 2.657  9.289  -1.888 0.046  -2.513 H15 R7E 41 
R7E H16 H16 H 0 1 N N N 25.800 2.677  8.200  -4.908 2.530  1.652  H16 R7E 42 
R7E H17 H17 H 0 1 N N N 31.076 -3.179 11.523 1.033  -4.115 0.151  H17 R7E 43 
R7E H18 H18 H 0 1 N N N 29.969 2.902  16.284 7.408  -0.857 0.014  H18 R7E 44 
R7E H19 H19 H 0 1 N N N 34.151 -0.299 17.434 5.869  3.488  -0.791 H19 R7E 45 
R7E H20 H20 H 0 1 N N N 33.482 0.807  18.681 4.093  3.373  -0.798 H20 R7E 46 
R7E H21 H21 H 0 1 N N N 33.470 -1.515 19.439 5.758  3.382  1.634  H21 R7E 47 
R7E H22 H22 H 0 1 N N N 31.931 -0.983 19.319 4.893  4.680  1.057  H22 R7E 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R7E O3  C3  SING N N 1  
R7E C4  C3  SING N N 2  
R7E C4  C5  SING N N 3  
R7E C4  O4  SING N N 4  
R7E C3  C2  SING N N 5  
R7E C5  C6  SING N N 6  
R7E C5  O5  SING N N 7  
R7E O2  C2  SING N N 8  
R7E C2  C1  SING N N 9  
R7E O5  C1  SING N N 10 
R7E C1  N1  SING N N 11 
R7E O7  C7  DOUB N N 12 
R7E N1  C7  SING N N 13 
R7E C7  C8  SING N N 14 
R7E C8  C9  DOUB Y N 15 
R7E C8  O8  SING Y N 16 
R7E C9  C10 SING Y N 17 
R7E O8  C11 SING Y N 18 
R7E C10 C11 DOUB Y N 19 
R7E C11 C12 SING N N 20 
R7E C12 C17 DOUB Y N 21 
R7E C12 C13 SING Y N 22 
R7E C17 C16 SING Y N 23 
R7E C13 C14 DOUB Y N 24 
R7E C16 C15 DOUB Y N 25 
R7E C14 C15 SING Y N 26 
R7E C14 C18 SING N N 27 
R7E C18 N2  SING N N 28 
R7E N1  H1  SING N N 29 
R7E C4  H2  SING N N 30 
R7E C5  H3  SING N N 31 
R7E C6  H4  SING N N 32 
R7E C6  H5  SING N N 33 
R7E C6  H6  SING N N 34 
R7E C10 H7  SING N N 35 
R7E C13 H8  SING N N 36 
R7E C15 H9  SING N N 37 
R7E C17 H10 SING N N 38 
R7E C1  H11 SING N N 39 
R7E C3  H12 SING N N 40 
R7E O3  H13 SING N N 41 
R7E C2  H14 SING N N 42 
R7E O2  H15 SING N N 43 
R7E O4  H16 SING N N 44 
R7E C9  H17 SING N N 45 
R7E C16 H18 SING N N 46 
R7E C18 H19 SING N N 47 
R7E C18 H20 SING N N 48 
R7E N2  H21 SING N N 49 
R7E N2  H22 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R7E InChI            InChI                1.06    "InChI=1S/C18H22N2O6/c1-9-14(21)15(22)16(23)18(25-9)20-17(24)13-6-5-12(26-13)11-4-2-3-10(7-11)8-19/h2-7,9,14-16,18,21-23H,8,19H2,1H3,(H,20,24)/t9-,14+,15+,16-,18-/m0/s1" 
R7E InChIKey         InChI                1.06    NOVNWDXRBIJEJE-GUJIERIFSA-N                                                                                                                                               
R7E SMILES_CANONICAL CACTVS               3.385   "C[C@@H]1O[C@H](NC(=O)c2oc(cc2)c3cccc(CN)c3)[C@@H](O)[C@H](O)[C@@H]1O"                                                                                                    
R7E SMILES           CACTVS               3.385   "C[CH]1O[CH](NC(=O)c2oc(cc2)c3cccc(CN)c3)[CH](O)[CH](O)[CH]1O"                                                                                                            
R7E SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)NC(=O)c2ccc(o2)c3cccc(c3)CN)O)O)O"                                                                                                    
R7E SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC1C(C(C(C(O1)NC(=O)c2ccc(o2)c3cccc(c3)CN)O)O)O"                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           R7E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "5-[3-(aminomethyl)phenyl]-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]furan-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R7E "Create component" 2022-11-23 PDBE 
R7E "Initial release"  2023-02-08 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      R7E 
_pdbx_chem_comp_synonyms.name         "(5-(3'-aminomethyl)phenyl)furan-2-carboxamido-b-L-fucopyranose" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
