data_PPE
#

_chem_comp.id                                   PPE
_chem_comp.name                                 "4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H20 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       379.280
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PPE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       1AKC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PPE  N1    N1    N  1  1  Y  N  N  43.690  15.780  44.946   2.672   3.074   1.048  N1    PPE   1  
PPE  C2    C2    C  0  1  Y  N  N  44.982  15.456  45.262   1.598   3.807   0.825  C2    PPE   2  
PPE  C2A   C2A   C  0  1  N  N  N  45.385  16.208  46.515   1.571   5.244   1.276  C2A   PPE   3  
PPE  C3    C3    C  0  1  Y  N  N  45.684  14.520  44.414   0.492   3.266   0.187  C3    PPE   4  
PPE  O3    O3    O  0  1  N  N  N  46.951  14.302  44.857  -0.612   4.025  -0.040  O3    PPE   5  
PPE  C4    C4    C  0  1  Y  N  N  45.127  13.953  43.271   0.533   1.939  -0.229  C4    PPE   6  
PPE  C4A   C4A   C  0  1  N  N  N  45.910  12.991  42.388  -0.644   1.313  -0.932  C4A   PPE   7  
PPE  C5    C5    C  0  1  Y  N  N  43.783  14.383  43.069   1.680   1.205   0.025  C5    PPE   8  
PPE  C6    C6    C  0  1  Y  N  N  43.078  15.263  43.863   2.741   1.812   0.673  C6    PPE   9  
PPE  C5A   C5A   C  0  1  N  N  N  42.944  13.928  41.870   1.771  -0.238  -0.399  C5A   PPE  10  
PPE  OP4   OP4   O  0  1  N  N  N  43.304  12.764  41.224   3.046  -0.766  -0.024  OP4   PPE  11  
PPE  P     P     P  0  1  N  N  N  42.356  12.019  40.166   3.073  -2.302  -0.505  P     PPE  12  
PPE  OP1   OP1   O  0  1  N  N  N  41.215  11.392  40.783   4.533  -2.924  -0.231  OP1   PPE  13  
PPE  OP2   OP2   O  0  1  N  N  N  43.312  11.235  39.288   1.970  -3.141   0.315  OP2   PPE  14  
PPE  OP3   OP3   O  0  1  N  N  N  41.745  13.164  39.392   2.771  -2.372  -1.952  OP3   PPE  15  
PPE  NA    NA    N  0  1  N  N  N  47.335  13.514  42.508  -1.548   0.718   0.062  NA    PPE  16  
PPE  CAA   CAA   C  0  1  N  N  S  48.314  12.379  42.400  -2.667   0.129  -0.686  CAA   PPE  17  
PPE  CBA   CBA   C  0  1  N  N  N  48.049  11.541  41.157  -3.292  -0.999   0.138  CBA   PPE  18  
PPE  CGA   CGA   C  0  1  N  N  N  48.620  12.120  39.873  -2.277  -2.131   0.306  CGA   PPE  19  
PPE  CDA   CDA   C  0  1  N  N  N  47.909  13.411  39.512  -2.894  -3.242   1.117  CDA   PPE  20  
PPE  OE1   OE1   O  0  1  N  N  N  48.432  14.428  39.910  -2.182  -4.346   1.392  OE1   PPE  21  
PPE  OE2   OE2   O  0  1  N  N  N  46.893  13.248  38.812  -4.028  -3.138   1.519  OE2   PPE  22  
PPE  CA    CA    C  0  1  N  N  N  49.757  12.909  42.428  -3.704   1.188  -0.956  CA    PPE  23  
PPE  OA    OA    O  0  1  N  N  N  49.822  14.084  43.116  -4.822   0.877  -1.629  OA    PPE  24  
PPE  OXT   OXT   O  0  1  N  N  N  50.793  12.290  41.896  -3.528   2.318  -0.566  OXT   PPE  25  
PPE  HN1   HN1   H  0  1  N  N  N  43.166  16.427  45.536   3.431   3.474   1.500  HN1   PPE  26  
PPE  H2A1  1H2A  H  0  0  N  N  N  46.437  15.944  46.772   1.951   5.882   0.478  H2A1  PPE  27  
PPE  H2A2  2H2A  H  0  0  N  N  N  45.234  17.308  46.417   0.546   5.531   1.514  H2A2  PPE  28  
PPE  H2A3  3H2A  H  0  0  N  N  N  44.682  16.029  47.362   2.195   5.360   2.162  H2A3  PPE  29  
PPE  HO3   HO3   H  0  1  N  N  N  47.412  13.686  44.299  -1.189   3.916   0.728  HO3   PPE  30  
PPE  H4A1  1H4A  H  0  0  N  N  N  45.784  11.913  42.643  -1.178   2.077  -1.497  H4A1  PPE  31  
PPE  H4A2  2H4A  H  0  0  N  N  N  45.531  12.900  41.343  -0.291   0.538  -1.612  H4A2  PPE  32  
PPE  H6    H6    H  0  1  N  N  N  42.037  15.549  43.634   3.637   1.245   0.873  H6    PPE  33  
PPE  H5A1  1H5A  H  0  0  N  N  N  41.875  13.855  42.180   0.983  -0.811   0.090  H5A1  PPE  34  
PPE  H5A2  2H5A  H  0  0  N  N  N  42.894  14.756  41.125   1.653  -0.308  -1.480  H5A2  PPE  35  
PPE  HOP2  2HOP  H  0  0  N  N  N  42.750  10.793  38.661   2.204  -3.070   1.251  HOP2  PPE  36  
PPE  HOP3  3HOP  H  0  0  N  N  N  41.183  12.722  38.765       ?       ?       ?  HOP3  PPE  37  
PPE  HNA   HNA   H  0  1  N  N  N  47.471  14.055  43.361  -1.047  -0.049   0.486  HNA   PPE  38  
PPE  HAA   HAA   H  0  1  N  N  N  48.176  11.711  43.282  -2.302  -0.272  -1.631  HAA   PPE  39  
PPE  HBA1  1HBA  H  0  0  N  N  N  48.412  10.497  41.307  -3.577  -0.618   1.118  HBA1  PPE  40  
PPE  HBA2  2HBA  H  0  0  N  N  N  46.956  11.348  41.044  -4.176  -1.377  -0.376  HBA2  PPE  41  
PPE  HGA1  1HGA  H  0  0  N  N  N  49.724  12.258  39.935  -1.993  -2.513  -0.675  HGA1  PPE  42  
PPE  HGA2  2HGA  H  0  0  N  N  N  48.591  11.382  39.036  -1.393  -1.754   0.820  HGA2  PPE  43  
PPE  HOE2  2HOE  H  0  0  N  N  N  46.447  14.056  38.586       ?       ?       ?  HOE2  PPE  44  
PPE  HXT   HXT   H  0  1  N  N  N  51.684  12.617  41.913       ?       ?       ?  HXT   PPE  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PPE  N1   C2    SING  Y  N   1  
PPE  N1   C6    DOUB  Y  N   2  
PPE  N1   HN1   SING  N  N   3  
PPE  C2   C2A   SING  N  N   4  
PPE  C2   C3    DOUB  Y  N   5  
PPE  C2A  H2A1  SING  N  N   6  
PPE  C2A  H2A2  SING  N  N   7  
PPE  C2A  H2A3  SING  N  N   8  
PPE  C3   O3    SING  N  N   9  
PPE  C3   C4    SING  Y  N  10  
PPE  O3   HO3   SING  N  N  11  
PPE  C4   C4A   SING  N  N  12  
PPE  C4   C5    DOUB  Y  N  13  
PPE  C4A  NA    SING  N  N  14  
PPE  C4A  H4A1  SING  N  N  15  
PPE  C4A  H4A2  SING  N  N  16  
PPE  C5   C6    SING  Y  N  17  
PPE  C5   C5A   SING  N  N  18  
PPE  C6   H6    SING  N  N  19  
PPE  C5A  OP4   SING  N  N  20  
PPE  C5A  H5A1  SING  N  N  21  
PPE  C5A  H5A2  SING  N  N  22  
PPE  OP4  P     SING  N  N  23  
PPE  P    OP1   DOUB  N  N  24  
PPE  P    OP2   SING  N  N  25  
PPE  P    OP3   SING  N  N  26  
PPE  OP2  HOP2  SING  N  N  27  
PPE  OP3  HOP3  SING  N  N  28  
PPE  NA   CAA   SING  N  N  29  
PPE  NA   HNA   SING  N  N  30  
PPE  CAA  CBA   SING  N  N  31  
PPE  CAA  CA    SING  N  N  32  
PPE  CAA  HAA   SING  N  N  33  
PPE  CBA  CGA   SING  N  N  34  
PPE  CBA  HBA1  SING  N  N  35  
PPE  CBA  HBA2  SING  N  N  36  
PPE  CGA  CDA   SING  N  N  37  
PPE  CGA  HGA1  SING  N  N  38  
PPE  CGA  HGA2  SING  N  N  39  
PPE  CDA  OE1   DOUB  N  N  40  
PPE  CDA  OE2   SING  N  N  41  
PPE  OE2  HOE2  SING  N  N  42  
PPE  CA   OA    DOUB  N  N  43  
PPE  CA   OXT   SING  N  N  44  
PPE  OXT  HXT   SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PPE  SMILES            ACDLabs               10.04  "O=C(O)C(NCc1c(c[nH+]c(c1O)C)COP(=O)(O)O)CCC(=O)O"  
PPE  SMILES_CANONICAL  CACTVS                3.341  "Cc1[nH+]cc(CO[P](O)(O)=O)c(CN[C@@H](CCC(O)=O)C(O)=O)c1O"  
PPE  SMILES            CACTVS                3.341  "Cc1[nH+]cc(CO[P](O)(O)=O)c(CN[CH](CCC(O)=O)C(O)=O)c1O"  
PPE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)CN[C@@H](CCC(=O)O)C(=O)O)O"  
PPE  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)CNC(CCC(=O)O)C(=O)O)O"  
PPE  InChI             InChI                 1.03   "InChI=1S/C13H19N2O9P/c1-7-12(18)9(8(4-14-7)6-24-25(21,22)23)5-15-10(13(19)20)2-3-11(16)17/h4,10,15,18H,2-3,5-6H2,1H3,(H,16,17)(H,19,20)(H2,21,22,23)/p+1/t10-/m0/s1"  
PPE  InChIKey          InChI                 1.03   JMRKOGDJNHPMHS-JTQLQIEISA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PPE  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridinium-4-yl}methyl)-L-glutamic acid"  
PPE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-1-ium-4-yl]methylamino]pentanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PPE  "Create component"   1999-07-08  RCSB  
PPE  "Modify descriptor"  2011-06-04  RCSB  
PPE  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PPE
_pdbx_chem_comp_synonyms.name        "PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
