data_PKE
#

_chem_comp.id                                   PKE
_chem_comp.name                                 "~{N}-methyl-~{N}-[3-[[[2-[(2-oxidanylidene-1,3-dihydroindol-5-yl)amino]pyrimidin-4-yl]amino]methyl]pyridin-2-yl]methanesulfonamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H21 N7 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-24
_chem_comp.pdbx_modified_date                   2021-02-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       439.491
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PKE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YT6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PKE  C2   C1   C  0  1  Y  N  N  -1.718   -3.806  18.916  -1.729   0.607   0.049  C2   PKE   1  
PKE  C9   C2   C  0  1  N  N  N  -0.047   -6.545  21.499   2.932   1.124  -0.843  C9   PKE   2  
PKE  C10  C3   C  0  1  Y  N  N  -0.899   -7.761  21.238   4.208   1.418  -0.097  C10  PKE   3  
PKE  C11  C4   C  0  1  Y  N  N  -0.773   -8.516  20.077   4.746   2.692  -0.101  C11  PKE   4  
PKE  C12  C5   C  0  1  Y  N  N  -1.597   -9.606  19.862   5.923   2.917   0.600  C12  PKE   5  
PKE  C13  C6   C  0  1  Y  N  N  -2.537   -9.922  20.816   6.519   1.871   1.275  C13  PKE   6  
PKE  C15  C7   C  0  1  Y  N  N  -1.887   -8.188  22.145   4.859   0.411   0.610  C15  PKE   7  
PKE  C20  C8   C  0  1  N  N  N  -2.023   -9.342  25.343   6.250  -2.815   0.380  C20  PKE   8  
PKE  C22  C9   C  0  1  Y  N  N  -3.654   -3.041  20.385  -4.094   0.467   0.500  C22  PKE   9  
PKE  C24  C10  C  0  1  Y  N  N  -4.553   -3.949  22.437  -5.771   0.902  -1.161  C24  PKE  10  
PKE  C27  C11  C  0  1  Y  N  N  -5.195   -1.737  21.687  -6.325  -0.343   0.813  C27  PKE  11  
PKE  N1   N1   N  0  1  Y  N  N  -1.147   -4.633  19.808  -0.500   0.842   0.484  N1   PKE  12  
PKE  N3   N2   N  0  1  Y  N  N  -1.259   -3.514  17.691  -1.980   0.374  -1.231  N3   PKE  13  
PKE  C4   C12  C  0  1  Y  N  N  -0.111   -4.111  17.351  -1.004   0.373  -2.127  C4   PKE  14  
PKE  C5   C13  C  0  1  Y  N  N   0.575   -4.973  18.178   0.292   0.618  -1.716  C5   PKE  15  
PKE  C6   C14  C  0  1  Y  N  N   0.001   -5.207  19.423   0.526   0.856  -0.360  C6   PKE  16  
PKE  N7   N3   N  0  1  N  N  N   0.608   -6.040  20.308   1.810   1.106   0.098  N7   PKE  17  
PKE  N8   N4   N  0  1  N  N  N  -2.854   -3.131  19.236  -2.776   0.599   0.955  N8   PKE  18  
PKE  N14  N5   N  0  1  Y  N  N  -2.700   -9.235  21.955   5.984   0.665   1.262  N14  PKE  19  
PKE  N16  N6   N  0  1  N  N  N  -2.056   -7.457  23.375   4.327  -0.873   0.627  N16  PKE  20  
PKE  S17  S1   S  0  1  N  N  N  -1.202   -7.944  24.680   4.860  -2.005  -0.457  S17  PKE  21  
PKE  C18  C15  C  0  1  N  N  N  -3.388   -6.892  23.613   3.294  -1.224   1.605  C18  PKE  22  
PKE  O19  O1   O  0  1  N  N  N  -1.274   -6.885  25.633   5.321  -1.241  -1.563  O19  PKE  23  
PKE  O21  O2   O  0  1  N  N  N   0.078   -8.359  24.206   3.767  -2.903  -0.592  O21  PKE  24  
PKE  C23  C16  C  0  1  Y  N  N  -4.383   -1.870  20.572  -5.030  -0.221   1.263  C23  PKE  25  
PKE  C25  C17  C  0  1  Y  N  N  -3.742   -4.074  21.318  -4.473   1.027  -0.713  C25  PKE  26  
PKE  C26  C18  C  0  1  Y  N  N  -5.271   -2.773  22.609  -6.713   0.214  -0.399  C26  PKE  27  
PKE  C28  C19  C  0  1  N  N  N  -6.086   -0.627  22.157  -7.553  -1.010   1.389  C28  PKE  28  
PKE  C29  C20  C  0  1  N  N  N  -6.641   -1.160  23.459  -8.631  -0.750   0.358  C29  PKE  29  
PKE  N30  N7   N  0  1  N  N  N  -6.124   -2.401  23.651  -8.067  -0.042  -0.635  N30  PKE  30  
PKE  O31  O3   O  0  1  N  N  N  -7.418   -0.589  24.217  -9.787  -1.112   0.418  O31  PKE  31  
PKE  H1   H1   H  0  1  N  N  N   0.725   -6.811  22.236   2.765   1.896  -1.594  H1   PKE  32  
PKE  H2   H2   H  0  1  N  N  N  -0.688   -5.751  21.909   3.012   0.153  -1.332  H2   PKE  33  
PKE  H3   H3   H  0  1  N  N  N  -0.029   -8.250  19.341   4.261   3.494  -0.637  H3   PKE  34  
PKE  H4   H4   H  0  1  N  N  N  -1.504  -10.197  18.963   6.369   3.901   0.617  H4   PKE  35  
PKE  H5   H5   H  0  1  N  N  N  -3.179  -10.771  20.637   7.435   2.041   1.822  H5   PKE  36  
PKE  H6   H6   H  0  1  N  N  N  -1.478   -9.703  26.228   5.901  -3.271   1.306  H6   PKE  37  
PKE  H7   H7   H  0  1  N  N  N  -3.047   -9.063  25.632   6.668  -3.584  -0.269  H7   PKE  38  
PKE  H8   H8   H  0  1  N  N  N  -2.060  -10.139  24.585   7.018  -2.075   0.608  H8   PKE  39  
PKE  H9   H9   H  0  1  N  N  N  -4.624   -4.749  23.159  -6.059   1.341  -2.105  H9   PKE  40  
PKE  H10  H10  H  0  1  N  N  N   0.301   -3.906  16.374  -1.219   0.181  -3.168  H10  PKE  41  
PKE  H11  H11  H  0  1  N  N  N   1.502   -5.439  17.878   1.105   0.623  -2.426  H11  PKE  42  
PKE  H12  H12  H  0  1  N  N  N   0.883   -6.846  19.783   1.965   1.270   1.041  H12  PKE  43  
PKE  H13  H13  H  0  1  N  N  N  -3.197   -2.572  18.481  -2.597   0.686   1.904  H13  PKE  44  
PKE  H14  H14  H  0  1  N  N  N  -3.395   -6.361  24.576   2.310  -1.105   1.153  H14  PKE  45  
PKE  H15  H15  H  0  1  N  N  N  -3.638   -6.189  22.805   3.427  -2.260   1.918  H15  PKE  46  
PKE  H16  H16  H  0  1  N  N  N  -4.131   -7.703  23.636   3.377  -0.570   2.473  H16  PKE  47  
PKE  H17  H17  H  0  1  N  N  N  -4.316   -1.069  19.851  -4.742  -0.659   2.207  H17  PKE  48  
PKE  H18  H18  H  0  1  N  N  N  -3.173   -4.980  21.168  -3.748   1.562  -1.308  H18  PKE  49  
PKE  H19  H19  H  0  1  N  N  N  -5.512    0.297  22.321  -7.386  -2.081   1.505  H19  PKE  50  
PKE  H20  H20  H  0  1  N  N  N  -6.892   -0.435  21.434  -7.821  -0.558   2.344  H20  PKE  51  
PKE  H21  H21  H  0  1  N  N  N  -6.329   -2.978  24.442  -8.544   0.257  -1.425  H21  PKE  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PKE  C4   N3   DOUB  Y  N   1  
PKE  C4   C5   SING  Y  N   2  
PKE  N3   C2   SING  Y  N   3  
PKE  C5   C6   DOUB  Y  N   4  
PKE  C2   N8   SING  N  N   5  
PKE  C2   N1   DOUB  Y  N   6  
PKE  N8   C22  SING  N  N   7  
PKE  C6   N1   SING  Y  N   8  
PKE  C6   N7   SING  N  N   9  
PKE  C12  C11  DOUB  Y  N  10  
PKE  C12  C13  SING  Y  N  11  
PKE  C11  C10  SING  Y  N  12  
PKE  N7   C9   SING  N  N  13  
PKE  C22  C23  DOUB  Y  N  14  
PKE  C22  C25  SING  Y  N  15  
PKE  C23  C27  SING  Y  N  16  
PKE  C13  N14  DOUB  Y  N  17  
PKE  C10  C9   SING  N  N  18  
PKE  C10  C15  DOUB  Y  N  19  
PKE  C25  C24  DOUB  Y  N  20  
PKE  C27  C28  SING  N  N  21  
PKE  C27  C26  DOUB  Y  N  22  
PKE  N14  C15  SING  Y  N  23  
PKE  C15  N16  SING  N  N  24  
PKE  C28  C29  SING  N  N  25  
PKE  C24  C26  SING  Y  N  26  
PKE  C26  N30  SING  N  N  27  
PKE  N16  C18  SING  N  N  28  
PKE  N16  S17  SING  N  N  29  
PKE  C29  N30  SING  N  N  30  
PKE  C29  O31  DOUB  N  N  31  
PKE  O21  S17  DOUB  N  N  32  
PKE  S17  C20  SING  N  N  33  
PKE  S17  O19  DOUB  N  N  34  
PKE  C9   H1   SING  N  N  35  
PKE  C9   H2   SING  N  N  36  
PKE  C11  H3   SING  N  N  37  
PKE  C12  H4   SING  N  N  38  
PKE  C13  H5   SING  N  N  39  
PKE  C20  H6   SING  N  N  40  
PKE  C20  H7   SING  N  N  41  
PKE  C20  H8   SING  N  N  42  
PKE  C24  H9   SING  N  N  43  
PKE  C4   H10  SING  N  N  44  
PKE  C5   H11  SING  N  N  45  
PKE  N7   H12  SING  N  N  46  
PKE  N8   H13  SING  N  N  47  
PKE  C18  H14  SING  N  N  48  
PKE  C18  H15  SING  N  N  49  
PKE  C18  H16  SING  N  N  50  
PKE  C23  H17  SING  N  N  51  
PKE  C25  H18  SING  N  N  52  
PKE  C28  H19  SING  N  N  53  
PKE  C28  H20  SING  N  N  54  
PKE  N30  H21  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PKE  InChI             InChI                 1.03   "InChI=1S/C20H21N7O3S/c1-27(31(2,29)30)19-13(4-3-8-21-19)12-23-17-7-9-22-20(26-17)24-15-5-6-16-14(10-15)11-18(28)25-16/h3-10H,11-12H2,1-2H3,(H,25,28)(H2,22,23,24,26)"  
PKE  InChIKey          InChI                 1.03   BTIZXJFJJCRTBP-UHFFFAOYSA-N  
PKE  SMILES_CANONICAL  CACTVS                3.385  "CN(c1ncccc1CNc2ccnc(Nc3ccc4NC(=O)Cc4c3)n2)[S](C)(=O)=O"  
PKE  SMILES            CACTVS                3.385  "CN(c1ncccc1CNc2ccnc(Nc3ccc4NC(=O)Cc4c3)n2)[S](C)(=O)=O"  
PKE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN(c1c(cccn1)CNc2ccnc(n2)Nc3ccc4c(c3)CC(=O)N4)S(=O)(=O)C"  
PKE  SMILES            "OpenEye OEToolkits"  2.0.7  "CN(c1c(cccn1)CNc2ccnc(n2)Nc3ccc4c(c3)CC(=O)N4)S(=O)(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          PKE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-methyl-~{N}-[3-[[[2-[(2-oxidanylidene-1,3-dihydroindol-5-yl)amino]pyrimidin-4-yl]amino]methyl]pyridin-2-yl]methanesulfonamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PKE  "Create component"  2020-04-24  PDBE  
PKE  "Initial release"   2021-02-10  RCSB  
##
