data_P8E
# 
_chem_comp.id                                    P8E 
_chem_comp.name                                  "5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid" 
_chem_comp.type                                  "D-saccharide, beta linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C9 H18 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Pse5Ac7Ac 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-06-01 
_chem_comp.pdbx_modified_date                    2026-02-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.249 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6X80 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P8E C9   C1  C 0 1 N N N N N N 168.018 292.241 176.052 4.190  1.188  0.173  C9   P8E 1  
P8E C8   C2  C 0 1 N N S N N N 166.580 291.810 175.790 2.758  1.021  -0.340 C8   P8E 2  
P8E C7   C3  C 0 1 N N S N N N 166.309 291.810 174.287 2.209  -0.333 0.113  C7   P8E 3  
P8E C6   C4  C 0 1 N N S N N N 166.136 290.381 173.835 0.777  -0.500 -0.399 C6   P8E 4  
P8E C5   C5  C 0 1 N N S N N N 165.500 290.359 172.452 0.226  -1.854 0.055  C5   P8E 5  
P8E C4   C6  C 0 1 N N S N N N 165.578 289.015 171.798 -1.227 -1.988 -0.410 C4   P8E 6  
P8E C3   C7  C 0 1 N N N N N N 166.094 287.954 172.669 -2.040 -0.815 0.145  C3   P8E 7  
P8E C2   C8  C 0 1 N N S N N N 167.389 288.322 173.378 -1.402 0.500  -0.313 C2   P8E 8  
P8E C1   C9  C 0 1 N N N N N N 168.542 288.080 172.415 -2.161 1.660  0.277  C1   P8E 9  
P8E N5   N1  N 0 1 N N N N N N 166.195 291.348 171.587 0.283  -1.941 1.521  N5   P8E 10 
P8E N7   N2  N 0 1 N N N N N N 165.092 292.558 174.017 3.051  -1.409 -0.427 N7   P8E 11 
P8E O6   O1  O 0 1 N N N N N N 167.439 289.743 173.840 -0.043 0.546  0.126  O6   P8E 12 
P8E O1A  O2  O 0 1 N N N N N N 168.479 287.122 171.604 -1.578 2.496  0.925  O1A  P8E 13 
P8E O1B  O3  O 0 1 N N N N N N 169.546 288.835 172.418 -3.485 1.763  0.084  O1B  P8E 14 
P8E O4   O4  O 0 1 N N N N N N 166.433 289.122 170.611 -1.772 -3.218 0.073  O4   P8E 15 
P8E O8   O5  O 0 1 N N N N N N 166.391 290.520 176.288 1.939  2.067  0.186  O8   P8E 16 
P8E O2   O6  O 0 1 N Y N N N N 168.329 287.443 173.969 -1.444 0.578  -1.740 O2   P8E 17 
P8E H91  H1  H 0 1 N N N N N N 168.210 292.240 177.135 4.815  0.389  -0.228 H91  P8E 18 
P8E H92  H2  H 0 1 N N N N N N 168.707 291.540 175.557 4.581  2.152  -0.150 H92  P8E 19 
P8E H93  H3  H 0 1 N N N N N N 168.176 293.254 175.653 4.194  1.140  1.262  H93  P8E 20 
P8E H8   H4  H 0 1 N N N N N N 165.897 292.522 176.277 2.754  1.068  -1.429 H8   P8E 21 
P8E H7   H5  H 0 1 N N N N N N 167.163 292.263 173.762 2.212  -0.381 1.202  H7   P8E 22 
P8E H6   H6  H 0 1 N N N N N N 165.468 289.863 174.539 0.773  -0.453 -1.488 H6   P8E 23 
P8E H5   H7  H 0 1 N N N N N N 164.443 290.647 172.548 0.824  -2.655 -0.380 H5   P8E 24 
P8E H4   H8  H 0 1 N N N N N N 164.565 288.735 171.473 -1.264 -1.975 -1.500 H4   P8E 25 
P8E H32  H9  H 0 1 N N N N N N 165.333 287.729 173.430 -3.063 -0.872 -0.227 H32  P8E 26 
P8E H31  H10 H 0 1 N N N N N N 166.276 287.059 172.056 -2.044 -0.857 1.234  H31  P8E 27 
P8E HN51 H11 H 0 0 N N N N N N 166.151 292.252 172.012 -0.075 -2.826 1.845  HN51 P8E 28 
P8E HN52 H12 H 0 0 N N N N N N 167.152 291.079 171.475 1.223  -1.786 1.856  HN52 P8E 29 
P8E HN72 H14 H 0 0 N N N N N N 165.209 293.505 174.317 2.747  -2.310 -0.089 HN72 P8E 30 
P8E HN71 H15 H 0 0 N N N N N N 164.901 292.541 173.036 3.063  -1.386 -1.435 HN71 P8E 31 
P8E HO1B H17 H 0 0 N N N N N N 170.161 288.548 171.753 -3.929 2.525  0.482  HO1B P8E 32 
P8E HO4  H18 H 0 1 N Y N N N N 166.492 288.275 170.185 -2.692 -3.368 -0.185 HO4  P8E 33 
P8E HO8  H19 H 0 1 N N N N N N 166.558 290.513 177.223 2.229  2.956  -0.062 HO8  P8E 34 
P8E HO2  H20 H 0 1 N Y N N N N 168.777 286.954 173.289 -1.056 1.387  -2.101 HO2  P8E 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P8E O4  C4   SING N N 1  
P8E N5  C5   SING N N 2  
P8E O1A C1   DOUB N N 3  
P8E C4  C5   SING N N 4  
P8E C4  C3   SING N N 5  
P8E C1  O1B  SING N N 6  
P8E C1  C2   SING N N 7  
P8E C5  C6   SING N N 8  
P8E C3  C2   SING N N 9  
P8E C2  O6   SING N N 10 
P8E C6  O6   SING N N 11 
P8E C6  C7   SING N N 12 
P8E N7  C7   SING N N 13 
P8E C7  C8   SING N N 14 
P8E C8  C9   SING N N 15 
P8E C8  O8   SING N N 16 
P8E C2  O2   SING N N 17 
P8E C9  H91  SING N N 18 
P8E C9  H92  SING N N 19 
P8E C9  H93  SING N N 20 
P8E C8  H8   SING N N 21 
P8E C7  H7   SING N N 22 
P8E C6  H6   SING N N 23 
P8E C5  H5   SING N N 24 
P8E C4  H4   SING N N 25 
P8E C3  H32  SING N N 26 
P8E C3  H31  SING N N 27 
P8E N5  HN51 SING N N 28 
P8E N5  HN52 SING N N 29 
P8E N7  HN72 SING N N 30 
P8E N7  HN71 SING N N 31 
P8E O1B HO1B SING N N 32 
P8E O4  HO4  SING N N 33 
P8E O8  HO8  SING N N 34 
P8E O2  HO2  SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P8E SMILES           ACDLabs              12.01 "CC(O)C(C1OC(CC(C1N)O)(O)C(O)=O)N"                                                                                                
P8E InChI            InChI                1.03  "InChI=1S/C9H18N2O6/c1-3(12)5(10)7-6(11)4(13)2-9(16,17-7)8(14)15/h3-7,12-13,16H,2,10-11H2,1H3,(H,14,15)/t3-,4-,5-,6-,7-,9-/m0/s1" 
P8E InChIKey         InChI                1.03  ZFZFJUIKYIVPNP-YXGHPGITSA-N                                                                                                       
P8E SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)[C@H](N)[C@@H]1O[C@@](O)(C[C@H](O)[C@@H]1N)C(O)=O"                                                                      
P8E SMILES           CACTVS               3.385 "C[CH](O)[CH](N)[CH]1O[C](O)(C[CH](O)[CH]1N)C(O)=O"                                                                               
P8E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H]([C@H]1[C@H]([C@H](C[C@](O1)(C(=O)O)O)O)N)N)O"                                                                     
P8E SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1C(C(CC(O1)(C(=O)O)O)O)N)N)O"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
P8E "SYSTEMATIC NAME" ACDLabs              12.01 "5,7-diamino-3,5,7,9-tetradeoxy-L-glycero-alpha-L-manno-non-2-ulopyranosonic acid"                                         
P8E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{S},5~{S},6~{S})-5-azanyl-6-[(1~{S},2~{S})-1-azanyl-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P8E "Create component"   2020-06-01 RCSB 
P8E "Initial release"    2020-07-08 RCSB 
P8E "Modify atom id"     2020-07-21 RCSB 
P8E "Other modification" 2026-02-16 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      P8E 
_pdbx_chem_comp_synonyms.name         Pse5Ac7Ac 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 P8E SER O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C2 OG  ? ? 
2 P8E THR O-Glycosylation Carbohydrate "Amino-acid side chain" "Any position" C2 OG1 ? ? 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
P8E "CARBOHYDRATE ANOMER"                 beta     PDB ? 
P8E "CARBOHYDRATE ISOMER"                 D        PDB ? 
P8E "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose   PDB ? 
P8E "CARBOHYDRATE RING"                   pyranose PDB ? 
# 
