data_OVE
#

_chem_comp.id                                   OVE
_chem_comp.name                                 "2'-O-(sulfidophosphinato)adenosine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H14 N5 O6 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ADENOSINE-2'-MONOPHOSPHOROTHIOATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-10-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       363.287
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OVE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YOZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OVE  O1P     O1P   O  0  1  N  N  N  36.673  5.010  71.023  -0.100   3.622  -0.969  O1P   OVE   1  
OVE  P       P     P  0  1  N  N  N  37.755  3.954  70.901   0.339   2.500   0.099  P     OVE   2  
OVE  S2P     S2P   S  0  1  N  N  N  37.011  2.344  71.764   1.788   3.309   1.419  S2P   OVE   3  
OVE  O3P     O3P   O  0  1  N  N  N  37.805  3.599  69.464  -0.845   2.065   0.873  O3P   OVE   4  
OVE  "O2'"   O2*   O  0  1  N  N  N  39.156  4.398  71.497   0.967   1.237  -0.677  O2*   OVE   5  
OVE  "C2'"   C2*   C  0  1  N  N  R  39.344  4.484  72.867   1.356   0.032  -0.015  C2*   OVE   6  
OVE  "C3'"   C3*   C  0  1  N  N  R  38.332  5.259  73.532   2.857  -0.268  -0.251  C3*   OVE   7  
OVE  "O3'"   O3*   O  0  1  N  N  N  37.763  6.263  72.718   3.331   0.430  -1.405  O3*   OVE   8  
OVE  "C1'"   C1*   C  0  1  N  N  R  40.600  5.262  73.146   0.673  -1.200  -0.662  C1*   OVE   9  
OVE  "O4'"   O4*   O  0  1  N  N  N  40.413  5.853  74.389   1.565  -2.289  -0.338  O4*   OVE  10  
OVE  "C4'"   C4*   C  0  1  N  N  R  39.054  5.963  74.595   2.905  -1.791  -0.484  C4*   OVE  11  
OVE  "C5'"   C5*   C  0  1  N  N  N  38.668  5.344  75.910   3.820  -2.446   0.552  C5*   OVE  12  
OVE  "O5'"   O5*   O  0  1  N  N  N  39.264  4.082  76.029   3.952  -3.839   0.258  O5*   OVE  13  
OVE  N9      N9    N  0  1  Y  N  N  41.811  4.455  73.112  -0.650  -1.425  -0.074  N9    OVE  14  
OVE  C8      C8    C  0  1  Y  N  N  42.854  4.527  72.199  -0.942  -2.271   0.953  C8    OVE  15  
OVE  N7      N7    N  0  1  Y  N  N  43.789  3.605  72.546  -2.215  -2.222   1.221  N7    OVE  16  
OVE  C5      C5    C  0  1  Y  N  N  43.352  2.955  73.675  -2.818  -1.344   0.385  C5    OVE  17  
OVE  C6      C6    C  0  1  Y  N  N  43.917  1.945  74.435  -4.137  -0.892   0.210  C6    OVE  18  
OVE  N6      N6    N  0  1  N  N  N  45.200  1.396  74.065  -5.161  -1.370   1.008  N6    OVE  19  
OVE  C4      C4    C  0  1  Y  N  N  42.116  3.481  74.040  -1.820  -0.817  -0.452  C4    OVE  20  
OVE  N3      N3    N  0  1  Y  N  N  41.481  3.016  75.109  -2.155   0.084  -1.370  N3    OVE  21  
OVE  C2      C2    C  0  1  Y  N  N  42.033  2.010  75.866  -3.404   0.482  -1.495  C2    OVE  22  
OVE  N1      N1    N  0  1  Y  N  N  43.270  1.473  75.516  -4.378   0.006  -0.740  N1    OVE  23  
OVE  H1P     H1P   H  0  1  N  N  N  36.300  5.182  70.166   0.627   3.954  -1.513  H1P   OVE  24  
OVE  H2P     H2P   H  0  1  N  N  N  36.834  1.551  70.749   1.136   4.339   1.989  H2P   OVE  25  
OVE  "H2'"   H2*   H  0  1  N  N  N  39.423  3.485  73.321   1.133   0.086   1.050  H2*   OVE  26  
OVE  "H3'"   H3*   H  0  1  N  N  N  37.557  4.606  73.961   3.443   0.005   0.626  H3*   OVE  27  
OVE  "H1'"   H1*   H  0  1  N  N  N  40.685  6.047  72.380   0.598  -1.074  -1.742  H1*   OVE  28  
OVE  HA      HA    H  0  1  N  N  N  37.105  6.737  73.213   4.266   0.278  -1.599  HA    OVE  29  
OVE  "H4'"   H4*   H  0  1  N  N  N  38.750  7.020  74.600   3.271  -2.000  -1.490  H4*   OVE  30  
OVE  "H5'1"  H5*1  H  0  0  N  N  N  39.010  5.989  76.733   4.802  -1.974   0.521  H5*1  OVE  31  
OVE  "H5'2"  H5*2  H  0  0  N  N  N  37.574  5.238  75.958   3.390  -2.324   1.546  H5*2  OVE  32  
OVE  "H5'"   H5*   H  0  1  N  N  N  39.019  3.693  76.860   4.519  -4.319   0.876  H5*   OVE  33  
OVE  H2      H2    H  0  1  N  N  N  41.508  1.636  76.732  -3.643   1.215  -2.251  H2    OVE  34  
OVE  H8      H8    H  0  1  N  N  N  42.912  5.201  71.357  -0.224  -2.891   1.469  H8    OVE  35  
OVE  H61N    H61N  H  0  0  N  N  N  45.457  0.680  74.715  -4.973  -2.025   1.699  H61N  OVE  36  
OVE  H62N    H62N  H  0  0  N  N  N  45.143  1.007  73.146  -6.068  -1.050   0.878  H62N  OVE  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OVE  O1P    P       SING  N  N   1  
OVE  P      S2P     SING  N  N   2  
OVE  P      O3P     DOUB  N  N   3  
OVE  P      "O2'"   SING  N  N   4  
OVE  "O2'"  "C2'"   SING  N  N   5  
OVE  "C2'"  "C3'"   SING  N  N   6  
OVE  "C2'"  "C1'"   SING  N  N   7  
OVE  "C3'"  "O3'"   SING  N  N   8  
OVE  "C3'"  "C4'"   SING  N  N   9  
OVE  "C1'"  "O4'"   SING  N  N  10  
OVE  "C1'"  N9      SING  N  N  11  
OVE  "O4'"  "C4'"   SING  N  N  12  
OVE  "C4'"  "C5'"   SING  N  N  13  
OVE  "C5'"  "O5'"   SING  N  N  14  
OVE  N9     C8      SING  Y  N  15  
OVE  N9     C4      SING  Y  N  16  
OVE  C8     N7      DOUB  Y  N  17  
OVE  N7     C5      SING  Y  N  18  
OVE  C5     C6      DOUB  Y  N  19  
OVE  C5     C4      SING  Y  N  20  
OVE  C6     N6      SING  N  N  21  
OVE  C6     N1      SING  Y  N  22  
OVE  C4     N3      DOUB  Y  N  23  
OVE  N3     C2      SING  Y  N  24  
OVE  H2     C2      SING  N  N  25  
OVE  N1     C2      DOUB  Y  N  26  
OVE  O1P    H1P     SING  N  N  27  
OVE  S2P    H2P     SING  N  N  28  
OVE  "C2'"  "H2'"   SING  N  N  29  
OVE  "C3'"  "H3'"   SING  N  N  30  
OVE  "C1'"  "H1'"   SING  N  N  31  
OVE  "O3'"  HA      SING  N  N  32  
OVE  "C4'"  "H4'"   SING  N  N  33  
OVE  "C5'"  "H5'1"  SING  N  N  34  
OVE  "C5'"  "H5'2"  SING  N  N  35  
OVE  "O5'"  "H5'"   SING  N  N  36  
OVE  C8     H8      SING  N  N  37  
OVE  N6     H61N    SING  N  N  38  
OVE  N6     H62N    SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OVE  SMILES            ACDLabs               12.01  "[O-]P([S-])(=O)OC3C(O)C(OC3n2cnc1c(ncnc12)N)CO"  
OVE  InChI             InChI                 1.03   "InChI=1S/C10H14N5O6PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(21-22(18,19)23)6(17)4(1-16)20-10/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,23)/p-2/t4-,6-,7-,10-/m1/s1"  
OVE  InChIKey          InChI                 1.03   KWODASVFOLWUKA-KQYNXXCUSA-L  
OVE  SMILES_CANONICAL  CACTVS                3.370  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O[P](O)(S)=O"  
OVE  SMILES            CACTVS                3.370  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O[P](O)(S)=O"  
OVE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)OP(=O)(O)S)N"  
OVE  SMILES            "OpenEye OEToolkits"  1.7.6  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)O)OP(=O)(O)S)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OVE  "SYSTEMATIC NAME"  ACDLabs               12.01  "2'-O-(sulfidophosphinato)adenosine"  
OVE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3R,4R,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-sulfanyl-phosphinic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OVE  "Create component"  2012-10-29  EBI   
OVE  "Modify atom id"    2012-11-12  EBI   
OVE  "Initial release"   2013-07-10  RCSB  
OVE  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     OVE
_pdbx_chem_comp_synonyms.name        "ADENOSINE-2'-MONOPHOSPHOROTHIOATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
