data_L9E
# 
_chem_comp.id                                    L9E 
_chem_comp.name                                  "N-(3-azanylpropyl)-3-[[(3S)-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-N-methyl-benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H25 F N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-27 
_chem_comp.pdbx_modified_date                    2022-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        384.447 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L9E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A7N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L9E C1  C1  C 0 1 Y N N 8.514 -12.592 -5.459 5.391  1.176  0.819  C1  L9E 1  
L9E C10 C2  C 0 1 Y N N 4.727 -7.083  -5.353 -0.488 -0.377 -0.618 C10 L9E 2  
L9E C11 C3  C 0 1 Y N N 3.629 -6.217  -5.267 -0.294 -1.754 -0.616 C11 L9E 3  
L9E C12 C4  C 0 1 Y N N 3.702 -4.953  -5.813 -1.282 -2.594 -0.138 C12 L9E 4  
L9E C13 C5  C 0 1 Y N N 4.851 -4.538  -6.464 -2.467 -2.072 0.341  C13 L9E 5  
L9E C14 C6  C 0 1 Y N N 5.942 -5.395  -6.578 -2.671 -0.692 0.343  C14 L9E 6  
L9E C15 C7  C 0 1 N N N 7.196 -4.974  -7.296 -3.939 -0.130 0.856  C15 L9E 7  
L9E C16 C8  C 0 1 N N N 7.861 -2.830  -8.167 -5.109 -2.036 -0.111 C16 L9E 8  
L9E C17 C9  C 0 1 N N N 8.278 -3.325  -5.752 -6.371 -0.139 1.008  C17 L9E 9  
L9E C18 C10 C 0 1 N N N 7.253 -2.985  -4.685 -6.892 0.764  -0.112 C18 L9E 10 
L9E C19 C11 C 0 1 N N N 6.384 -1.802  -5.013 -8.213 1.403  0.323  C19 L9E 11 
L9E C2  C12 C 0 1 Y N N 9.029 -13.810 -5.834 6.509  1.133  1.632  C2  L9E 12 
L9E C20 C13 C 0 1 Y N N 5.874 -6.664  -6.022 -1.672 0.157  -0.134 C20 L9E 13 
L9E C21 C14 C 0 1 N N N 6.425 -10.133 -5.188 2.750  -0.301 -0.478 C21 L9E 14 
L9E C3  C15 C 0 1 Y N N 8.292 -14.941 -5.561 7.334  0.024  1.618  C3  L9E 15 
L9E C4  C16 C 0 1 Y N N 7.080 -14.853 -4.916 7.045  -1.046 0.791  C4  L9E 16 
L9E C5  C17 C 0 1 Y N N 6.570 -13.626 -4.535 5.931  -1.010 -0.025 C5  L9E 17 
L9E C6  C18 C 0 1 Y N N 7.278 -12.470 -4.834 5.099  0.101  -0.014 C6  L9E 18 
L9E C7  C19 C 0 1 N N N 6.417 -10.977 -2.993 3.960  0.666  -2.209 C7  L9E 19 
L9E C8  C20 C 0 1 N N N 5.378 -9.880  -3.057 2.473  0.909  -2.549 C8  L9E 20 
L9E C9  C21 C 0 1 N N S 5.815 -9.075  -4.271 1.767  -0.097 -1.609 C9  L9E 21 
L9E F1  F1  F 0 1 N N N 9.237 -11.481 -5.737 4.582  2.258  0.837  F1  L9E 22 
L9E N1  N1  N 0 1 N N N 6.735 -11.214 -4.408 3.968  0.140  -0.839 N1  L9E 23 
L9E N2  N2  N 0 1 N N N 4.672 -8.361  -4.824 0.513  0.468  -1.103 N2  L9E 24 
L9E N3  N3  N 0 1 N N N 7.724 -3.757  -7.047 -5.106 -0.750 0.592  N3  L9E 25 
L9E N4  N4  N 0 1 N N N 5.307 -1.645  -4.031 -8.714 2.270  -0.752 N4  L9E 26 
L9E O1  O1  O 0 1 N N N 7.648 -5.701  -8.184 -3.929 0.891  1.515  O1  L9E 27 
L9E O2  O2  O 0 1 N N N 6.631 -10.021 -6.385 2.479  -0.786 0.600  O2  L9E 28 
L9E H1  H1  H 0 1 N N N 2.725 -6.540  -4.773 0.630  -2.168 -0.990 H1  L9E 29 
L9E H2  H2  H 0 1 N N N 2.859 -4.283  -5.732 -1.126 -3.663 -0.139 H2  L9E 30 
L9E H3  H3  H 0 1 N N N 4.901 -3.545  -6.885 -3.236 -2.732 0.714  H3  L9E 31 
L9E H4  H4  H 0 1 N N N 8.303 -1.887  -7.812 -4.976 -2.844 0.609  H4  L9E 32 
L9E H5  H5  H 0 1 N N N 8.513 -3.275  -8.933 -6.060 -2.164 -0.628 H5  L9E 33 
L9E H6  H6  H 0 1 N N N 6.870 -2.630  -8.600 -4.295 -2.056 -0.835 H6  L9E 34 
L9E H7  H7  H 0 1 N N N 8.912 -4.137  -5.367 -6.209 0.454  1.908  H7  L9E 35 
L9E H8  H8  H 0 1 N N N 8.894 -2.431  -5.928 -7.102 -0.921 1.214  H8  L9E 36 
L9E H9  H9  H 0 1 N N N 6.603 -3.860  -4.541 -6.162 1.546  -0.318 H9  L9E 37 
L9E H10 H10 H 0 1 N N N 7.789 -2.769  -3.749 -7.054 0.171  -1.012 H10 L9E 38 
L9E H11 H11 H 0 1 N N N 7.003 -0.892  -5.015 -8.944 0.621  0.529  H11 L9E 39 
L9E H12 H12 H 0 1 N N N 5.942 -1.947  -6.010 -8.052 1.996  1.223  H12 L9E 40 
L9E H13 H13 H 0 1 N N N 9.986 -13.878 -6.330 6.738  1.967  2.279  H13 L9E 41 
L9E H14 H14 H 0 1 N N N 6.718 -7.333  -6.109 -1.824 1.226  -0.135 H14 L9E 42 
L9E H15 H15 H 0 1 N N N 8.670 -15.908 -5.857 8.207  -0.007 2.254  H15 L9E 43 
L9E H16 H16 H 0 1 N N N 6.521 -15.753 -4.705 7.692  -1.911 0.782  H16 L9E 44 
L9E H17 H17 H 0 1 N N N 5.629 -13.567 -4.009 5.707  -1.846 -0.671 H17 L9E 45 
L9E H18 H18 H 0 1 N N N 6.007 -11.883 -2.523 4.390  -0.063 -2.895 H18 L9E 46 
L9E H19 H19 H 0 1 N N N 7.307 -10.647 -2.438 4.516  1.603  -2.258 H19 L9E 47 
L9E H20 H20 H 0 1 N N N 5.395 -9.264  -2.146 2.181  1.932  -2.315 H20 L9E 48 
L9E H21 H21 H 0 1 N N N 4.370 -10.296 -3.199 2.269  0.676  -3.594 H21 L9E 49 
L9E H22 H22 H 0 1 N N N 6.598 -8.362  -3.971 1.581  -1.037 -2.127 H22 L9E 50 
L9E H23 H23 H 0 1 N N N 3.999 -8.317  -4.085 0.379  1.428  -1.105 H23 L9E 51 
L9E H24 H24 H 0 1 N N N 4.747 -0.853  -4.274 -8.811 1.757  -1.615 H24 L9E 52 
L9E H25 H25 H 0 1 N N N 4.738 -2.467  -4.027 -9.587 2.704  -0.489 H25 L9E 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L9E O1  C15 DOUB N N 1  
L9E C16 N3  SING N N 2  
L9E C15 N3  SING N N 3  
L9E C15 C14 SING N N 4  
L9E N3  C17 SING N N 5  
L9E C14 C13 DOUB Y N 6  
L9E C14 C20 SING Y N 7  
L9E C13 C12 SING Y N 8  
L9E O2  C21 DOUB N N 9  
L9E C20 C10 DOUB Y N 10 
L9E C2  C3  DOUB Y N 11 
L9E C2  C1  SING Y N 12 
L9E C12 C11 DOUB Y N 13 
L9E C17 C18 SING N N 14 
L9E F1  C1  SING N N 15 
L9E C3  C4  SING Y N 16 
L9E C1  C6  DOUB Y N 17 
L9E C10 C11 SING Y N 18 
L9E C10 N2  SING N N 19 
L9E C21 N1  SING N N 20 
L9E C21 C9  SING N N 21 
L9E C19 C18 SING N N 22 
L9E C19 N4  SING N N 23 
L9E C4  C5  DOUB Y N 24 
L9E C6  C5  SING Y N 25 
L9E C6  N1  SING N N 26 
L9E N2  C9  SING N N 27 
L9E N1  C7  SING N N 28 
L9E C9  C8  SING N N 29 
L9E C8  C7  SING N N 30 
L9E C11 H1  SING N N 31 
L9E C12 H2  SING N N 32 
L9E C13 H3  SING N N 33 
L9E C16 H4  SING N N 34 
L9E C16 H5  SING N N 35 
L9E C16 H6  SING N N 36 
L9E C17 H7  SING N N 37 
L9E C17 H8  SING N N 38 
L9E C18 H9  SING N N 39 
L9E C18 H10 SING N N 40 
L9E C19 H11 SING N N 41 
L9E C19 H12 SING N N 42 
L9E C2  H13 SING N N 43 
L9E C20 H14 SING N N 44 
L9E C3  H15 SING N N 45 
L9E C4  H16 SING N N 46 
L9E C5  H17 SING N N 47 
L9E C7  H18 SING N N 48 
L9E C7  H19 SING N N 49 
L9E C8  H20 SING N N 50 
L9E C8  H21 SING N N 51 
L9E C9  H22 SING N N 52 
L9E N2  H23 SING N N 53 
L9E N4  H24 SING N N 54 
L9E N4  H25 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L9E InChI            InChI                1.06  "InChI=1S/C21H25FN4O2/c1-25(12-5-11-23)20(27)15-6-4-7-16(14-15)24-18-10-13-26(21(18)28)19-9-3-2-8-17(19)22/h2-4,6-9,14,18,24H,5,10-13,23H2,1H3/t18-/m0/s1" 
L9E InChIKey         InChI                1.06  FKBZAUSZYONVAZ-SFHVURJKSA-N                                                                                                                                
L9E SMILES_CANONICAL CACTVS               3.385 "CN(CCCN)C(=O)c1cccc(N[C@H]2CCN(C2=O)c3ccccc3F)c1"                                                                                                         
L9E SMILES           CACTVS               3.385 "CN(CCCN)C(=O)c1cccc(N[CH]2CCN(C2=O)c3ccccc3F)c1"                                                                                                          
L9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CCCN)C(=O)c1cccc(c1)N[C@H]2CCN(C2=O)c3ccccc3F"                                                                                                         
L9E SMILES           "OpenEye OEToolkits" 2.0.7 "CN(CCCN)C(=O)c1cccc(c1)NC2CCN(C2=O)c3ccccc3F"                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           L9E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-(3-azanylpropyl)-3-[[(3~{S})-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-~{N}-methyl-benzamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      L9E 
_pdbx_chem_comp_synonyms.name         "(S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L9E "Create component"  2022-06-27 PDBE 
L9E "Modify descriptor" 2022-08-22 RCSB 
L9E "Initial release"   2022-10-05 RCSB 
# 
