data_L6E
# 
_chem_comp.id                                    L6E 
_chem_comp.name                                  "[2-(methylamino)-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H21 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-07-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        347.366 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     L6E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SC8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
L6E C10 C1  C 0 1 N N N N N N -41.110 60.391 56.990 4.289   1.024  0.465  C10 L6E 1  
L6E N12 N1  N 0 1 N N N N N N -41.884 60.175 60.598 0.711   1.066  -0.489 N12 L6E 2  
L6E C13 C2  C 0 1 N N N N N N -42.160 61.009 61.755 -0.469  1.928  -0.389 C13 L6E 3  
L6E C15 C3  C 0 1 N N N N N N -44.506 61.155 60.924 -2.757  1.058  -0.154 C15 L6E 4  
L6E C21 C4  C 0 1 N N N N N N -48.939 65.560 61.991 -9.526  -1.240 1.190  C21 L6E 5  
L6E C01 C5  C 0 1 N N N N N N -40.618 60.185 54.548 6.672   0.647  1.055  C01 L6E 6  
L6E C02 C6  C 0 1 N N N N N N -39.737 59.316 53.664 7.608   -0.514 1.379  C02 L6E 7  
L6E C03 C7  C 0 1 N N N N N N -40.252 57.886 53.669 7.713   -1.406 0.136  C03 L6E 8  
L6E C04 C8  C 0 1 N N N N N N -40.035 57.229 55.027 6.370   -2.101 -0.069 C04 L6E 9  
L6E C05 C9  C 0 1 N N N N N N -40.451 58.139 56.163 5.242   -1.099 -0.051 C05 L6E 10 
L6E C06 C10 C 0 1 N N N N N N -40.730 59.582 55.928 5.380   0.144  0.466  C06 L6E 11 
L6E C08 C11 C 0 1 N N N N N N -40.920 58.394 58.443 2.980   -0.693 -0.612 C08 L6E 12 
L6E C09 C12 C 0 1 N N N N N N -41.216 59.841 58.259 3.074   0.615  -0.070 C09 L6E 13 
L6E C11 C13 C 0 1 N N N N N N -41.619 60.716 59.411 1.911   1.516  -0.075 C11 L6E 14 
L6E C14 C14 C 0 1 N N N N N N -43.631 60.971 62.159 -1.675  1.193  -0.916 C14 L6E 15 
L6E C16 C15 C 0 1 N N N N N N -45.935 61.488 61.275 -3.933  0.341  -0.668 C16 L6E 16 
L6E C18 C16 C 0 1 N N N N N N -47.656 63.246 60.751 -6.153  -0.516 -0.468 C18 L6E 17 
L6E C19 C17 C 0 1 N N N N N N -46.917 64.504 61.152 -7.279  -0.567 0.532  C19 L6E 18 
L6E N07 N2  N 0 1 N N N N N N -40.558 57.634 57.399 4.052   -1.500 -0.582 N07 L6E 19 
L6E N20 N3  N 0 1 N N N N N N -47.514 65.293 62.042 -8.432  -1.190 0.218  N20 L6E 20 
L6E O17 O1  O 0 1 N N N N N N -46.726 62.252 60.324 -5.030  0.205  0.104  O17 L6E 21 
L6E O22 O2  O 0 1 N N N N N N -41.013 57.878 59.575 1.931   -1.084 -1.094 O22 L6E 22 
L6E O23 O3  O 0 1 N N N N N N -41.707 61.921 59.230 2.034   2.668  0.296  O23 L6E 23 
L6E O24 O4  O 0 1 N N N N N N -46.443 61.109 62.317 -3.916  -0.129 -1.788 O24 L6E 24 
L6E O25 O5  O 0 1 N N N N N N -45.826 64.763 60.669 -7.147  -0.048 1.621  O25 L6E 25 
L6E H1  H1  H 0 1 N N N N N N -41.321 61.438 56.830 4.392   2.015  0.883  H1  L6E 26 
L6E H2  H2  H 0 1 N N N N N N -41.893 59.180 60.695 0.628   0.171  -0.854 H2  L6E 27 
L6E H3  H3  H 0 1 N N N N N N -41.552 60.654 62.600 -0.635  2.197  0.654  H3  L6E 28 
L6E H4  H4  H 0 1 N N N N N N -41.885 62.047 61.516 -0.310  2.832  -0.977 H4  L6E 29 
L6E H5  H5  H 0 1 N N N N N N -44.143 61.058 59.911 -2.772  1.476  0.842  H5  L6E 30 
L6E H7  H7  H 0 1 N N N N N N -49.216 66.232 62.816 -9.188  -1.751 2.092  H7  L6E 31 
L6E H8  H8  H 0 1 N N N N N N -49.189 66.035 61.031 -9.835  -0.226 1.442  H8  L6E 32 
L6E H9  H9  H 0 1 N N N N N N -49.493 64.614 62.087 -10.370 -1.781 0.761  H9  L6E 33 
L6E H10 H10 H 0 1 N N N N N N -40.176 61.190 54.625 6.457   1.202  1.969  H10 L6E 34 
L6E H11 H11 H 0 1 N N N N N N -41.621 60.259 54.101 7.158   1.310  0.339  H11 L6E 35 
L6E H12 H12 H 0 1 N N N N N N -38.706 59.334 54.046 8.594   -0.130 1.641  H12 L6E 36 
L6E H13 H13 H 0 1 N N N N N N -39.754 59.706 52.636 7.204   -1.090 2.212  H13 L6E 37 
L6E H14 H14 H 0 1 N N N N N N -41.328 57.891 53.440 7.948   -0.795 -0.736 H14 L6E 38 
L6E H15 H15 H 0 1 N N N N N N -39.716 57.309 52.901 8.494   -2.152 0.284  H15 L6E 39 
L6E H16 H16 H 0 1 N N N N N N -40.630 56.305 55.075 6.375   -2.617 -1.029 H16 L6E 40 
L6E H17 H17 H 0 1 N N N N N N -38.968 56.985 55.138 6.217   -2.829 0.729  H17 L6E 41 
L6E H19 H19 H 0 1 N N N N N N -43.997 60.835 63.166 -1.660  0.775  -1.912 H19 L6E 42 
L6E H21 H21 H 0 1 N N N N N N -48.348 63.476 59.927 -5.844  -1.530 -0.720 H21 L6E 43 
L6E H22 H22 H 0 1 N N N N N N -48.225 62.867 61.613 -6.491  -0.004 -1.370 H22 L6E 44 
L6E H23 H23 H 0 1 N N N N N N -46.966 65.713 62.765 -8.537  -1.605 -0.652 H23 L6E 45 
L6E H6  H6  H 0 1 N N N N N N -40.363 56.665 57.547 3.979   -2.394 -0.952 H6  L6E 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
L6E C02 C03 SING N N 1  
L6E C02 C01 SING N N 2  
L6E C03 C04 SING N N 3  
L6E C01 C06 SING N N 4  
L6E C04 C05 SING N N 5  
L6E C06 C05 DOUB N N 6  
L6E C06 C10 SING N N 7  
L6E C05 N07 SING N N 8  
L6E C10 C09 DOUB N N 9  
L6E N07 C08 SING N N 10 
L6E C09 C08 SING N N 11 
L6E C09 C11 SING N N 12 
L6E C08 O22 DOUB N N 13 
L6E O23 C11 DOUB N N 14 
L6E C11 N12 SING N N 15 
L6E O17 C18 SING N N 16 
L6E O17 C16 SING N N 17 
L6E N12 C13 SING N N 18 
L6E O25 C19 DOUB N N 19 
L6E C18 C19 SING N N 20 
L6E C15 C16 SING N N 21 
L6E C15 C14 DOUB N E 22 
L6E C19 N20 SING N N 23 
L6E C16 O24 DOUB N N 24 
L6E C13 C14 SING N N 25 
L6E C21 N20 SING N N 26 
L6E C10 H1  SING N N 27 
L6E N12 H2  SING N N 28 
L6E C13 H3  SING N N 29 
L6E C13 H4  SING N N 30 
L6E C15 H5  SING N N 31 
L6E C21 H7  SING N N 32 
L6E C21 H8  SING N N 33 
L6E C21 H9  SING N N 34 
L6E C01 H10 SING N N 35 
L6E C01 H11 SING N N 36 
L6E C02 H12 SING N N 37 
L6E C02 H13 SING N N 38 
L6E C03 H14 SING N N 39 
L6E C03 H15 SING N N 40 
L6E C04 H16 SING N N 41 
L6E C04 H17 SING N N 42 
L6E C14 H19 SING N N 43 
L6E C18 H21 SING N N 44 
L6E C18 H22 SING N N 45 
L6E N20 H23 SING N N 46 
L6E N07 H6  SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
L6E InChI            InChI                1.03  "InChI=1S/C17H21N3O5/c1-18-14(21)10-25-15(22)7-4-8-19-16(23)12-9-11-5-2-3-6-13(11)20-17(12)24/h4,7,9H,2-3,5-6,8,10H2,1H3,(H,18,21)(H,19,23)(H,20,24)/b7-4+" 
L6E InChIKey         InChI                1.03  TVQYRIKRPWLBEA-QPJJXVBHSA-N                                                                                                                                 
L6E SMILES_CANONICAL CACTVS               3.385 "CNC(=O)COC(=O)\C=C\CNC(=O)C1=CC2=C(CCCC2)NC1=O"                                                                                                            
L6E SMILES           CACTVS               3.385 "CNC(=O)COC(=O)C=CCNC(=O)C1=CC2=C(CCCC2)NC1=O"                                                                                                              
L6E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)COC(=O)/C=C/CNC(=O)C1=CC2=C(CCCC2)NC1=O"                                                                                                            
L6E SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)COC(=O)C=CCNC(=O)C1=CC2=C(CCCC2)NC1=O"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           L6E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[2-(methylamino)-2-oxidanylidene-ethyl] (~{E})-4-[(2-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-quinolin-3-yl)carbonylamino]but-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
L6E "Create component" 2019-07-23 EBI  
L6E "Initial release"  2019-11-27 RCSB 
L6E "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            L6E 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
