data_K9E
# 
_chem_comp.id                                    K9E 
_chem_comp.name                                  "[4-[[[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]amino]methyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-13 
_chem_comp.pdbx_modified_date                    2023-07-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        350.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K9E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GUH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K9E O3P O1  O 0 1 N N N 42.750 8.952  48.704 3.993  -2.174 1.190  O3P K9E 1  
K9E P   P1  P 0 1 N N N 41.643 9.582  49.514 4.280  -1.283 0.044  P   K9E 2  
K9E O1P O2  O 0 1 N N N 42.048 10.931 50.098 5.772  -0.693 0.183  O1P K9E 3  
K9E O2P O3  O 0 1 N N N 40.977 8.711  50.550 4.157  -2.116 -1.328 O2P K9E 4  
K9E O4P O4  O 0 1 N N N 40.476 10.060 48.394 3.222  -0.069 0.031  O4P K9E 5  
K9E C5A C1  C 0 1 N N N 39.362 10.857 48.697 1.807  -0.269 0.022  C5A K9E 6  
K9E C5  C2  C 0 1 Y N N 38.180 10.393 47.893 1.111  1.067  0.010  C5  K9E 7  
K9E C6  C3  C 0 1 Y N N 37.810 11.089 46.772 1.842  2.237  0.003  C6  K9E 8  
K9E N1  N1  N 0 1 Y N N 36.734 10.703 46.054 1.244  3.413  -0.013 N1  K9E 9  
K9E C4  C4  C 0 1 Y N N 37.451 9.166  48.293 -0.287 1.139  0.001  C4  K9E 10 
K9E C4A C5  C 0 1 N N N 37.918 8.501  49.559 -1.111 -0.086 0.003  C4A K9E 11 
K9E C3  C6  C 0 1 Y N N 36.299 8.745  47.489 -0.884 2.410  -0.011 C3  K9E 12 
K9E O3  O5  O 0 1 N N N 35.527 7.672  47.792 -2.235 2.539  -0.020 O3  K9E 13 
K9E C2  C7  C 0 1 Y N N 35.980 9.598  46.305 -0.067 3.533  -0.023 C2  K9E 14 
K9E C2A C8  C 0 1 N N N 34.799 9.235  45.453 -0.689 4.905  -0.040 C2A K9E 15 
K9E O31 O6  O 0 1 N N N 35.245 8.056  51.655 -5.497 -2.018 -0.014 O31 K9E 16 
K9E C31 C9  C 0 1 N N N 36.390 7.497  52.272 -4.700 -0.832 -0.016 C31 K9E 17 
K9E C   C10 C 0 1 N N N 37.273 6.777  51.275 -3.218 -1.214 -0.004 C   K9E 18 
K9E N   N2  N 0 1 N N N 37.095 7.408  49.966 -2.401 0.002  -0.006 N   K9E 19 
K9E C21 C11 C 0 1 N N N 38.705 6.849  51.909 -2.912 -2.031 1.253  C21 K9E 20 
K9E O2  O7  O 0 1 N N N 39.737 6.411  51.019 -3.213 -1.253 2.413  O2  K9E 21 
K9E C1  C12 C 0 1 N N N 36.777 5.341  51.080 -2.896 -2.047 -1.246 C1  K9E 22 
K9E O1  O8  O 0 1 N N N 35.647 5.338  50.172 -3.070 -1.245 -2.416 O1  K9E 23 
K9E H1  H1  H 0 1 N N N 42.940 11.133 49.841 6.462  -1.370 0.198  H1  K9E 24 
K9E H2  H2  H 0 1 N N N 41.373 7.848  50.540 4.333  -1.594 -2.122 H2  K9E 25 
K9E H3  H3  H 0 1 N N N 39.584 11.906 48.451 1.526  -0.834 -0.867 H3  K9E 26 
K9E H4  H4  H 0 1 N N N 39.132 10.773 49.769 1.514  -0.824 0.913  H4  K9E 27 
K9E H5  H5  H 0 1 N N N 38.382 11.951 46.461 2.921  2.189  0.010  H5  K9E 28 
K9E H6  H6  H 0 1 N N N 38.792 8.820  50.107 -0.636 -1.056 0.012  H6  K9E 29 
K9E H8  H8  H 0 1 N N N 35.869 7.245  48.569 -2.632 2.582  0.860  H8  K9E 30 
K9E H9  H9  H 0 1 N N N 34.679 9.981  44.654 -0.833 5.226  -1.072 H9  K9E 31 
K9E H10 H10 H 0 1 N N N 34.960 8.243  45.007 -1.653 4.874  0.468  H10 K9E 32 
K9E H11 H11 H 0 1 N N N 33.891 9.215  46.074 -0.032 5.609  0.471  H11 K9E 33 
K9E H12 H12 H 0 1 N N N 34.716 8.498  52.309 -6.449 -1.852 -0.021 H12 K9E 34 
K9E H13 H13 H 0 1 N N N 36.066 6.781  53.042 -4.918 -0.250 -0.911 H13 K9E 35 
K9E H14 H14 H 0 1 N N N 36.970 8.304  52.743 -4.929 -0.238 0.869  H14 K9E 36 
K9E H17 H17 H 0 1 N N N 38.723 6.212  52.806 -3.520 -2.936 1.255  H17 K9E 37 
K9E H18 H18 H 0 1 N N N 38.909 7.891  52.195 -1.857 -2.303 1.261  H18 K9E 38 
K9E H19 H19 H 0 1 N N N 40.579 6.476  51.454 -3.043 -1.709 3.248  H19 K9E 39 
K9E H20 H20 H 0 1 N N N 36.468 4.925  52.050 -1.863 -2.393 -1.193 H20 K9E 40 
K9E H21 H21 H 0 1 N N N 37.587 4.727  50.659 -3.565 -2.906 -1.291 H21 K9E 41 
K9E H22 H22 H 0 1 N N N 35.340 4.447  50.051 -2.883 -1.711 -3.243 H22 K9E 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K9E C2A C2  SING N N 1  
K9E N1  C2  DOUB Y N 2  
K9E N1  C6  SING Y N 3  
K9E C2  C3  SING Y N 4  
K9E C6  C5  DOUB Y N 5  
K9E C3  O3  SING N N 6  
K9E C3  C4  DOUB Y N 7  
K9E C5  C4  SING Y N 8  
K9E C5  C5A SING N N 9  
K9E C4  C4A SING N N 10 
K9E O4P C5A SING N N 11 
K9E O4P P   SING N N 12 
K9E O3P P   DOUB N N 13 
K9E P   O1P SING N N 14 
K9E P   O2P SING N N 15 
K9E C4A N   DOUB N N 16 
K9E N   C   SING N N 17 
K9E O1  C1  SING N N 18 
K9E O2  C21 SING N N 19 
K9E C1  C   SING N N 20 
K9E C   C21 SING N N 21 
K9E C   C31 SING N N 22 
K9E O31 C31 SING N N 23 
K9E O1P H1  SING N N 24 
K9E O2P H2  SING N N 25 
K9E C5A H3  SING N N 26 
K9E C5A H4  SING N N 27 
K9E C6  H5  SING N N 28 
K9E C4A H6  SING N N 29 
K9E O3  H8  SING N N 30 
K9E C2A H9  SING N N 31 
K9E C2A H10 SING N N 32 
K9E C2A H11 SING N N 33 
K9E O31 H12 SING N N 34 
K9E C31 H13 SING N N 35 
K9E C31 H14 SING N N 36 
K9E C21 H17 SING N N 37 
K9E C21 H18 SING N N 38 
K9E O2  H19 SING N N 39 
K9E C1  H20 SING N N 40 
K9E C1  H21 SING N N 41 
K9E O1  H22 SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K9E InChI            InChI                1.06  "InChI=1S/C12H19N2O8P/c1-8-11(18)10(3-14-12(5-15,6-16)7-17)9(2-13-8)4-22-23(19,20)21/h2-3,15-18H,4-7H2,1H3,(H2,19,20,21)/b14-3+" 
K9E InChIKey         InChI                1.06  GKGTZXISICTHPS-LZWSPWQCSA-N                                                                                                      
K9E SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(CO)(CO)CO)c1O"                                                                                      
K9E SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=NC(CO)(CO)CO)c1O"                                                                                      
K9E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/C(CO)(CO)CO)O"                                                                                    
K9E SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CO)(CO)CO)O"                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           K9E 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[4-[(~{E})-[2-(hydroxymethyl)-1,3-bis(oxidanyl)propan-2-yl]iminomethyl]-6-methyl-5-oxidanyl-pyridin-3-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K9E "Create component" 2022-09-13 PDBJ 
K9E "Modify formula"   2022-09-14 PDBJ 
K9E "Modify formula"   2022-09-16 PDBJ 
K9E "Initial release"  2023-07-19 RCSB 
# 
