data_K3E
#

_chem_comp.id                                   K3E
_chem_comp.name                                 "(2~{R},3~{S},4~{R},5~{R})-2-(aminomethyl)-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]oxolane-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H27 N11 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       569.530
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K3E
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RGA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K3E  C2     C1   C  0  1  Y  N  N  19.918   5.356   8.432   7.586  -1.244   2.234  C2     K3E   1  
K3E  C4     C2   C  0  1  Y  N  N  17.926   6.280   8.192   6.020  -1.055   0.563  C4     K3E   2  
K3E  C5     C3   C  0  1  Y  N  N  17.533   5.204   7.502   6.492  -2.253   0.000  C5     K3E   3  
K3E  C6     C4   C  0  1  Y  N  N  18.410   4.181   7.279   7.549  -2.917   0.645  C6     K3E   4  
K3E  N9     N1   N  0  1  Y  N  N  16.942   7.090   8.266   4.998  -0.633  -0.249  N9     K3E   5  
K3E  "C1'"  C5   C  0  1  N  N  R  16.881   8.354   8.885   4.192   0.577  -0.070  "C1'"  K3E   6  
K3E  "C2'"  C6   C  0  1  N  N  R  16.711   9.479   7.863   4.865   1.780  -0.767  "C2'"  K3E   7  
K3E  "C3'"  C7   C  0  1  N  N  S  15.481  10.211   8.404   3.683   2.591  -1.343  "C3'"  K3E   8  
K3E  "C4'"  C8   C  0  1  N  N  R  15.403   9.687   9.820   2.434   1.782  -0.926  "C4'"  K3E   9  
K3E  "C5'"  C9   C  0  1  N  N  N  14.003   9.935  10.496   1.382   1.817  -2.036  "C5'"  K3E  10  
K3E  C8     C10  C  0  1  Y  N  N  15.958   6.526   7.637   4.870  -1.546  -1.253  C8     K3E  11  
K3E  CAP    C11  C  0  1  N  N  N  14.287  11.123  12.793  -0.859   1.141  -2.552  CAP    K3E  12  
K3E  CAQ    C12  C  0  1  N  N  N  15.714  11.375  12.749  -2.029   0.448  -1.987  CAQ    K3E  13  
K3E  CAR    C13  C  0  1  N  N  N  16.843  11.568  12.707  -2.962  -0.104  -1.537  CAR    K3E  14  
K3E  CAS    C14  C  0  1  Y  N  N  18.230  11.703  12.707  -4.100  -0.778  -0.988  CAS    K3E  15  
K3E  CAU    C15  C  0  1  Y  N  N  20.217  11.350  13.109  -5.800  -1.290   0.330  CAU    K3E  16  
K3E  CAW    C16  C  0  1  Y  N  N  22.429  11.609  13.007  -7.622  -2.428   1.150  CAW    K3E  17  
K3E  CAY    C17  C  0  1  Y  N  N  21.229  13.101  11.903  -6.640  -3.271  -0.762  CAY    K3E  18  
K3E  CAZ    C18  C  0  1  Y  N  N  20.101  12.440  12.323  -5.703  -2.222  -0.718  CAZ    K3E  19  
K3E  CBC    C19  C  0  1  N  N  R  18.597   9.818  14.091  -4.480   0.771   0.979  CBC    K3E  20  
K3E  CBE    C20  C  0  1  N  N  R  19.329   9.246  16.139  -3.446   2.821   1.016  CBE    K3E  21  
K3E  CBF    C21  C  0  1  N  N  N  20.820   9.370  16.281  -2.645   3.818   0.177  CBF    K3E  22  
K3E  CBH    C22  C  0  1  N  N  S  19.246   8.017  15.311  -2.494   1.906   1.818  CBH    K3E  23  
K3E  CBJ    C23  C  0  1  N  N  R  19.296   8.570  13.922  -3.190   0.527   1.794  CBJ    K3E  24  
K3E  N1     N2   N  0  1  Y  N  N  19.590   4.309   7.780   8.060  -2.375   1.746  N1     K3E  25  
K3E  N3     N3   N  0  1  Y  N  N  19.128   6.320   8.628   6.591  -0.592   1.670  N3     K3E  26  
K3E  N6     N4   N  0  1  N  N  N  18.113   3.111   6.626   8.056  -4.101   0.138  N6     K3E  27  
K3E  N7     N5   N  0  1  Y  N  N  16.321   5.399   7.173   5.747  -2.496  -1.105  N7     K3E  28  
K3E  NAT    N6   N  0  1  Y  N  N  19.037  10.923  13.314  -4.782  -0.389   0.138  NAT    K3E  29  
K3E  NAV    N7   N  0  1  Y  N  N  21.415  10.952  13.430  -6.767  -1.430   1.231  NAV    K3E  30  
K3E  NAX    N8   N  0  1  Y  N  N  22.371  12.637  12.254  -7.569  -3.330   0.186  NAX    K3E  31  
K3E  NBA    N9   N  0  1  Y  N  N  18.861  12.623  12.117  -4.653  -1.859  -1.487  NBA    K3E  32  
K3E  NBB    N10  N  0  1  N  N  N  21.182  14.148  11.174  -6.593  -4.221  -1.767  NBB    K3E  33  
K3E  NBG    N11  N  0  1  N  N  N  21.096  10.593  16.984  -3.567   4.730  -0.513  NBG    K3E  34  
K3E  "O2'"  O1   O  0  1  N  N  N  17.798  10.287   7.873   5.595   2.563   0.179  "O2'"  K3E  35  
K3E  "O3'"  O2   O  0  1  N  N  N  15.670  11.557   8.424   3.646   3.899  -0.770  "O3'"  K3E  36  
K3E  "O4'"  O3   O  0  1  N  N  N  15.734   8.369   9.622   2.916   0.434  -0.732  "O4'"  K3E  37  
K3E  "O5'"  O4   O  0  1  N  N  N  13.923   9.982  11.955   0.193   1.164  -1.586  "O5'"  K3E  38  
K3E  OBD    O5   O  0  1  N  N  N  18.846  10.253  15.389  -4.186   1.924   0.160  OBD    K3E  39  
K3E  OBI    O6   O  0  1  N  N  N  18.031   7.437  15.576  -2.362   2.377   3.161  OBI    K3E  40  
K3E  OBK    O7   O  0  1  N  N  N  18.501   7.863  13.122  -3.508   0.103   3.121  OBK    K3E  41  
K3E  H1     H1   H  0  1  N  N  N  20.918   5.420   8.835   8.028  -0.840   3.134  H1     K3E  42  
K3E  H2     H2   H  0  1  N  N  N  17.773   8.544   9.500   4.048   0.783   0.990  H2     K3E  43  
K3E  H3     H3   H  0  1  N  N  N  16.497   9.060   6.869   5.523   1.439  -1.567  H3     K3E  44  
K3E  H4     H4   H  0  1  N  N  N  14.586   9.916   7.837   3.755   2.652  -2.429  H4     K3E  45  
K3E  H5     H5   H  0  1  N  N  N  16.168  10.193  10.427   2.020   2.176   0.002  H5     K3E  46  
K3E  H6     H6   H  0  1  N  N  N  13.629  10.899  10.121   1.154   2.853  -2.288  H6     K3E  47  
K3E  H7     H7   H  0  1  N  N  N  13.335   9.127  10.162   1.766   1.305  -2.918  H7     K3E  48  
K3E  H8     H8   H  0  1  N  N  N  14.972   6.952   7.524   4.147  -1.490  -2.054  H8     K3E  49  
K3E  H9     H9   H  0  1  N  N  N  13.754  12.016  12.434  -0.521   0.614  -3.445  H9     K3E  50  
K3E  H10    H10  H  0  1  N  N  N  13.992  10.913  13.832  -1.134   2.162  -2.815  H10    K3E  51  
K3E  H11    H11  H  0  1  N  N  N  23.407  11.267  13.311  -8.395  -2.512   1.899  H11    K3E  52  
K3E  H12    H12  H  0  1  N  N  N  17.519   9.661  13.941  -5.315   0.984   1.647  H12    K3E  53  
K3E  H13    H13  H  0  1  N  N  N  18.834   9.123  17.114  -4.122   3.349   1.689  H13    K3E  54  
K3E  H14    H14  H  0  1  N  N  N  21.214   8.515  16.850  -1.985   4.392   0.827  H14    K3E  55  
K3E  H15    H15  H  0  1  N  N  N  21.289   9.396  15.287  -2.050   3.278  -0.560  H15    K3E  56  
K3E  H16    H16  H  0  1  N  N  N  20.097   7.347  15.503  -1.519   1.853   1.335  H16    K3E  57  
K3E  H17    H17  H  0  1  N  N  N  20.328   8.698  13.562  -2.559  -0.210   1.297  H17    K3E  58  
K3E  H18    H18  H  0  1  N  N  N  18.905   2.500   6.608   7.681  -4.482  -0.672  H18    K3E  59  
K3E  H19    H19  H  0  1  N  N  N  17.346   2.650   7.073   8.785  -4.550   0.592  H19    K3E  60  
K3E  H20    H20  H  0  1  N  N  N  22.112  14.461  10.979  -7.243  -4.941  -1.784  H20    K3E  61  
K3E  H21    H21  H  0  1  N  N  N  20.715  13.936  10.315  -5.910  -4.167  -2.454  H21    K3E  62  
K3E  H22    H22  H  0  1  N  N  N  22.084  10.700  17.092  -3.062   5.399  -1.074  H22    K3E  63  
K3E  H23    H23  H  0  1  N  N  N  20.732  11.366  16.464  -4.232   4.218  -1.073  H23    K3E  64  
K3E  H25    H25  H  0  1  N  N  N  18.548   9.813   7.534   5.989   3.364  -0.193  H25    K3E  65  
K3E  H26    H26  H  0  1  N  N  N  14.891  11.982   8.764   4.435   4.430  -0.950  H26    K3E  66  
K3E  H27    H27  H  0  1  N  N  N  18.029   7.096  16.463  -1.775   1.839   3.710  H27    K3E  67  
K3E  H28    H28  H  0  1  N  N  N  18.892   7.013  12.957  -2.735  -0.065   3.676  H28    K3E  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K3E  N6     C6     SING  N  N   1  
K3E  N7     C5     SING  Y  N   2  
K3E  N7     C8     DOUB  Y  N   3  
K3E  C6     C5     DOUB  Y  N   4  
K3E  C6     N1     SING  Y  N   5  
K3E  C5     C4     SING  Y  N   6  
K3E  C8     N9     SING  Y  N   7  
K3E  N1     C2     DOUB  Y  N   8  
K3E  "C2'"  "O2'"  SING  N  N   9  
K3E  "C2'"  "C3'"  SING  N  N  10  
K3E  "C2'"  "C1'"  SING  N  N  11  
K3E  C4     N9     SING  Y  N  12  
K3E  C4     N3     DOUB  Y  N  13  
K3E  N9     "C1'"  SING  N  N  14  
K3E  "C3'"  "O3'"  SING  N  N  15  
K3E  "C3'"  "C4'"  SING  N  N  16  
K3E  C2     N3     SING  Y  N  17  
K3E  "C1'"  "O4'"  SING  N  N  18  
K3E  "O4'"  "C4'"  SING  N  N  19  
K3E  "C4'"  "C5'"  SING  N  N  20  
K3E  "C5'"  "O5'"  SING  N  N  21  
K3E  NBB    CAY    SING  N  N  22  
K3E  CAY    NAX    DOUB  Y  N  23  
K3E  CAY    CAZ    SING  Y  N  24  
K3E  "O5'"  CAP    SING  N  N  25  
K3E  NBA    CAZ    SING  Y  N  26  
K3E  NBA    CAS    DOUB  Y  N  27  
K3E  NAX    CAW    SING  Y  N  28  
K3E  CAZ    CAU    DOUB  Y  N  29  
K3E  CAS    CAR    SING  N  N  30  
K3E  CAS    NAT    SING  Y  N  31  
K3E  CAR    CAQ    TRIP  N  N  32  
K3E  CAQ    CAP    SING  N  N  33  
K3E  CAW    NAV    DOUB  Y  N  34  
K3E  CAU    NAT    SING  Y  N  35  
K3E  CAU    NAV    SING  Y  N  36  
K3E  OBK    CBJ    SING  N  N  37  
K3E  NAT    CBC    SING  N  N  38  
K3E  CBJ    CBC    SING  N  N  39  
K3E  CBJ    CBH    SING  N  N  40  
K3E  CBC    OBD    SING  N  N  41  
K3E  CBH    OBI    SING  N  N  42  
K3E  CBH    CBE    SING  N  N  43  
K3E  OBD    CBE    SING  N  N  44  
K3E  CBE    CBF    SING  N  N  45  
K3E  CBF    NBG    SING  N  N  46  
K3E  C2     H1     SING  N  N  47  
K3E  "C1'"  H2     SING  N  N  48  
K3E  "C2'"  H3     SING  N  N  49  
K3E  "C3'"  H4     SING  N  N  50  
K3E  "C4'"  H5     SING  N  N  51  
K3E  "C5'"  H6     SING  N  N  52  
K3E  "C5'"  H7     SING  N  N  53  
K3E  C8     H8     SING  N  N  54  
K3E  CAP    H9     SING  N  N  55  
K3E  CAP    H10    SING  N  N  56  
K3E  CAW    H11    SING  N  N  57  
K3E  CBC    H12    SING  N  N  58  
K3E  CBE    H13    SING  N  N  59  
K3E  CBF    H14    SING  N  N  60  
K3E  CBF    H15    SING  N  N  61  
K3E  CBH    H16    SING  N  N  62  
K3E  CBJ    H17    SING  N  N  63  
K3E  N6     H18    SING  N  N  64  
K3E  N6     H19    SING  N  N  65  
K3E  NBB    H20    SING  N  N  66  
K3E  NBB    H21    SING  N  N  67  
K3E  NBG    H22    SING  N  N  68  
K3E  NBG    H23    SING  N  N  69  
K3E  "O2'"  H25    SING  N  N  70  
K3E  "O3'"  H26    SING  N  N  71  
K3E  OBI    H27    SING  N  N  72  
K3E  OBK    H28    SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K3E  InChI             InChI                 1.03   "InChI=1S/C23H27N11O7/c24-4-9-14(35)17(38)23(40-9)34-11(32-13-19(26)28-7-30-21(13)34)2-1-3-39-5-10-15(36)16(37)22(41-10)33-8-31-12-18(25)27-6-29-20(12)33/h6-10,14-17,22-23,35-38H,3-5,24H2,(H2,25,27,29)(H2,26,28,30)/t9-,10-,14-,15-,16-,17-,22-,23-/m1/s1"  
K3E  InChIKey          InChI                 1.03   NNTKMVAYMCZJCQ-MKWZPUSRSA-N  
K3E  SMILES_CANONICAL  CACTVS                3.385  "NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCOC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56"  
K3E  SMILES            CACTVS                3.385  "NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCOC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56"  
K3E  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COCC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CN)O)O)N)O)O)N"  
K3E  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COCC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CN)O)O)N)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          K3E
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{R},5~{R})-2-(aminomethyl)-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K3E  "Create component"  2019-04-16  RCSB  
K3E  "Initial release"   2020-02-19  RCSB  
##
