data_BJE
#

_chem_comp.id                                   BJE
_chem_comp.name                                 "2,2'-Anhydro-(1-beta-D-ribofuranosyl)uracil"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H10 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Anhydrouridine; 2,2'-ANHYDROURIDINE; CYCLOURIDINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-10-06
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       226.186
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BJE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1Y1R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BJE  "O3'"  O1   O  0  1  N  N  N   8.243  61.418  92.969  -2.023  -2.222  -0.821  "O3'"  BJE   1  
BJE  "C3'"  C1   C  0  1  N  N  R   9.396  60.592  92.780  -2.044  -1.257   0.233  "C3'"  BJE   2  
BJE  "C2'"  C2   C  0  1  N  N  R  10.562  61.357  92.165  -0.631  -0.860   0.629  "C2'"  BJE   3  
BJE  O2     O2   O  0  1  N  N  N  10.524  62.297  91.087   0.519  -1.634   0.239  O2     BJE   4  
BJE  C2     C3   C  0  1  N  N  N  11.777  62.796  91.276   1.509  -0.684   0.099  C2     BJE   5  
BJE  N3     N1   N  0  1  N  N  N  12.835  63.072  90.393   2.806  -0.820   0.254  N3     BJE   6  
BJE  C4     C4   C  0  1  N  N  N  14.077  63.452  90.905   3.643   0.216   0.110  C4     BJE   7  
BJE  O4     O3   O  0  1  N  N  N  15.035  63.606  90.121   4.847   0.060   0.245  O4     BJE   8  
BJE  C5     C5   C  0  1  N  N  N  14.293  63.589  92.263   3.117   1.495  -0.201  C5     BJE   9  
BJE  C6     C6   C  0  1  N  N  N  13.248  63.327  93.152   1.786   1.625  -0.374  C6     BJE  10  
BJE  N1     N2   N  0  1  N  N  N  12.004  62.924  92.656   0.971   0.538  -0.252  N1     BJE  11  
BJE  "C1'"  C7   C  0  1  N  N  R  10.800  62.338  93.287  -0.423   0.299  -0.424  "C1'"  BJE  12  
BJE  "O4'"  O4   O  0  1  N  N  N  10.982  61.414  94.372  -1.561   1.066  -0.249  "O4'"  BJE  13  
BJE  "C4'"  C8   C  0  1  N  N  R  10.060  60.325  94.138  -2.649   0.090  -0.264  "C4'"  BJE  14  
BJE  "C5'"  C9   C  0  1  N  N  N  10.920  59.061  94.050  -3.770   0.539   0.676  "C5'"  BJE  15  
BJE  "O5'"  O5   O  0  1  N  N  N  11.991  59.279  93.126  -4.393   1.712   0.148  "O5'"  BJE  16  
BJE  H1     H1   H  0  1  N  N  N   7.543  60.903  93.353  -2.898  -2.447  -1.165  H1     BJE  17  
BJE  H2     H2   H  0  1  N  N  N   9.183  59.659  92.238  -2.597  -1.636   1.092  H2     BJE  18  
BJE  H3     H3   H  0  1  N  N  N  11.429  60.687  92.069  -0.575  -0.518   1.662  H3     BJE  19  
BJE  H4     H4   H  0  1  N  N  N  15.260  63.896  92.633   3.770   2.350  -0.298  H4     BJE  20  
BJE  H5     H5   H  0  1  N  N  N  13.400  63.435  94.216   1.364   2.591  -0.609  H5     BJE  21  
BJE  H6     H6   H  0  1  N  N  N   9.976  63.053  93.425  -0.539  -0.202  -1.385  H6     BJE  22  
BJE  H7     H7   H  0  1  N  N  N   9.307  60.236  94.935  -3.034  -0.025  -1.277  H7     BJE  23  
BJE  H8     H8   H  0  1  N  N  N  10.302  58.220  93.704  -4.509  -0.256   0.767  H8     BJE  24  
BJE  H9     H9   H  0  1  N  N  N  11.333  58.828  95.043  -3.353   0.761   1.659  H9     BJE  25  
BJE  H10    H10  H  0  1  N  N  N  12.526  58.496  93.070  -5.115   2.053   0.693  H10    BJE  26  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BJE  O4     C4     DOUB  N  N   1  
BJE  N3     C4     SING  N  N   2  
BJE  N3     C2     DOUB  N  N   3  
BJE  C4     C5     SING  N  N   4  
BJE  O2     C2     SING  N  N   5  
BJE  O2     "C2'"  SING  N  N   6  
BJE  C2     N1     SING  N  N   7  
BJE  "C2'"  "C3'"  SING  N  N   8  
BJE  "C2'"  "C1'"  SING  N  N   9  
BJE  C5     C6     DOUB  N  N  10  
BJE  N1     C6     SING  N  N  11  
BJE  N1     "C1'"  SING  N  N  12  
BJE  "C3'"  "O3'"  SING  N  N  13  
BJE  "C3'"  "C4'"  SING  N  N  14  
BJE  "O5'"  "C5'"  SING  N  N  15  
BJE  "C1'"  "O4'"  SING  N  N  16  
BJE  "C5'"  "C4'"  SING  N  N  17  
BJE  "C4'"  "O4'"  SING  N  N  18  
BJE  "O3'"  H1     SING  N  N  19  
BJE  "C3'"  H2     SING  N  N  20  
BJE  "C2'"  H3     SING  N  N  21  
BJE  C5     H4     SING  N  N  22  
BJE  C6     H5     SING  N  N  23  
BJE  "C1'"  H6     SING  N  N  24  
BJE  "C4'"  H7     SING  N  N  25  
BJE  "C5'"  H8     SING  N  N  26  
BJE  "C5'"  H9     SING  N  N  27  
BJE  "O5'"  H10    SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BJE  InChI             InChI                 1.03   "InChI=1S/C9H10N2O5/c12-3-4-6(14)7-8(15-4)11-2-1-5(13)10-9(11)16-7/h1-2,4,6-8,12,14H,3H2/t4-,6-,7-,8-/m1/s1"  
BJE  InChIKey          InChI                 1.03   UUGITDASWNOAGG-XVFCMESISA-N  
BJE  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H]2[C@H](OC3=NC(=O)C=CN23)[C@@H]1O"  
BJE  SMILES            CACTVS                3.385  "OC[CH]1O[CH]2[CH](OC3=NC(=O)C=CN23)[CH]1O"  
BJE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1=CN2[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)OC2=NC1=O"  
BJE  SMILES            "OpenEye OEToolkits"  2.0.6  "C1=CN2C3C(C(C(O3)CO)O)OC2=NC1=O"  
#
_pdbx_chem_comp_identifier.comp_id          BJE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},4~{R},5~{R},6~{R})-4-(hydroxymethyl)-5-oxidanyl-3,7-dioxa-1,9-diazatricyclo[6.4.0.0^{2,6}]dodeca-8,11-dien-10-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BJE  "Create component"    2017-10-06  EBI   
BJE  "Other modification"  2017-10-09  RCSB  
BJE  "Modify synonyms"     2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BJE  Anhydrouridine         ?  ?  
2  BJE  "2,2'-ANHYDROURIDINE"  ?  ?  
3  BJE  CYCLOURIDINE           ?  ?  
##
