data_B5E
# 
_chem_comp.id                                    B5E 
_chem_comp.name                                  "2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-(trifluoromethyl)phenyl]methyl]ethanamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H24 F3 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-15 
_chem_comp.pdbx_modified_date                    2018-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        423.473 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     B5E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EHU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B5E F2  F1  F 0 1 N N N -150.921 194.328 312.130 -2.756 -2.984 -0.416 F2  B5E 1  
B5E C24 C1  C 0 1 N N N -151.477 193.134 311.892 -3.606 -1.910 -0.132 C24 B5E 2  
B5E F   F2  F 0 1 N N N -150.654 192.180 312.323 -4.257 -1.509 -1.303 F   B5E 3  
B5E F1  F3  F 0 1 N N N -151.473 193.022 310.571 -4.554 -2.304 0.818  F1  B5E 4  
B5E C23 C2  C 0 1 Y N N -152.853 193.025 312.487 -2.798 -0.760 0.412  C23 B5E 5  
B5E C8  C3  C 0 1 Y N N -153.889 193.896 312.090 -3.410 0.466  0.664  C8  B5E 6  
B5E C7  C4  C 0 1 Y N N -153.785 194.930 311.016 -4.859 0.643  0.397  C7  B5E 7  
B5E C6  C5  C 0 1 Y N N -153.966 194.512 309.692 -5.801 0.048  1.232  C6  B5E 8  
B5E C5  C6  C 0 1 Y N N -153.902 195.423 308.651 -7.148 0.221  0.982  C5  B5E 9  
B5E C4  C7  C 0 1 Y N N -153.672 196.760 308.913 -7.562 0.984  -0.094 C4  B5E 10 
B5E C3  C8  C 0 1 Y N N -153.493 197.192 310.215 -6.630 1.577  -0.927 C3  B5E 11 
B5E C2  C9  C 0 1 Y N N -153.533 196.290 311.281 -5.281 1.411  -0.687 C2  B5E 12 
B5E C1  C10 C 0 1 N N N -153.217 196.790 312.678 -4.267 2.063  -1.591 C1  B5E 13 
B5E C   C11 C 0 1 N N N -154.243 197.750 313.253 -3.845 1.074  -2.680 C   B5E 14 
B5E C22 C12 C 0 1 Y N N -153.078 192.099 313.507 -1.451 -0.922 0.668  C22 B5E 15 
B5E C11 C13 C 0 1 Y N N -154.306 192.018 314.161 -0.708 0.132  1.168  C11 B5E 16 
B5E C10 C14 C 0 1 Y N N -155.315 192.893 313.773 -1.310 1.353  1.416  C10 B5E 17 
B5E C9  C15 C 0 1 Y N N -155.118 193.808 312.751 -2.657 1.524  1.168  C9  B5E 18 
B5E C12 C16 C 0 1 N N N -154.557 190.997 315.247 0.762  -0.050 1.446  C12 B5E 19 
B5E N   N1  N 0 1 N N N -154.796 189.623 314.766 1.534  0.297  0.245  N   B5E 20 
B5E C13 C17 C 0 1 N N N -156.014 189.470 313.965 2.974  0.130  0.479  C13 B5E 21 
B5E C14 C18 C 0 1 N N N -156.848 188.282 314.413 3.743  0.500  -0.791 C14 B5E 22 
B5E C15 C19 C 0 1 Y N N -156.976 187.201 313.390 5.221  0.329  -0.551 C15 B5E 23 
B5E N2  N2  N 0 1 Y N N -157.521 186.023 313.626 6.051  -0.436 -1.311 N2  B5E 24 
B5E C21 C20 C 0 1 Y N N -157.415 185.323 312.422 7.317  -0.330 -0.770 C21 B5E 25 
B5E C16 C21 C 0 1 Y N N -156.808 186.135 311.463 7.195  0.528  0.336  C16 B5E 26 
B5E N1  N3  N 0 1 Y N N -156.529 187.328 312.114 5.891  0.897  0.409  N1  B5E 27 
B5E C20 C22 C 0 1 Y N N -157.833 184.036 312.078 8.555  -0.866 -1.096 C20 B5E 28 
B5E C19 C23 C 0 1 Y N N -157.668 183.605 310.764 9.658  -0.552 -0.331 C19 B5E 29 
B5E C18 C24 C 0 1 Y N N -157.075 184.437 309.805 9.537  0.295  0.762  C18 B5E 30 
B5E C17 C25 C 0 1 Y N N -156.626 185.707 310.149 8.327  0.833  1.097  C17 B5E 31 
B5E H1  H1  H 0 1 N N N -154.157 193.470 309.481 -5.479 -0.549 2.073  H1  B5E 32 
B5E H2  H2  H 0 1 N N N -154.032 195.088 307.633 -7.880 -0.241 1.629  H2  B5E 33 
B5E H3  H3  H 0 1 N N N -153.632 197.469 308.100 -8.616 1.117  -0.286 H3  B5E 34 
B5E H4  H4  H 0 1 N N N -153.320 198.240 310.410 -6.958 2.171  -1.767 H4  B5E 35 
B5E H5  H5  H 0 1 N N N -153.149 195.919 313.347 -4.707 2.946  -2.053 H5  B5E 36 
B5E H6  H6  H 0 1 N N N -152.245 197.305 312.647 -3.394 2.355  -1.007 H6  B5E 37 
B5E H7  H7  H 0 1 N N N -153.933 198.058 314.262 -4.717 0.782  -3.263 H7  B5E 38 
B5E H8  H8  H 0 1 N N N -154.318 198.637 312.606 -3.111 1.546  -3.334 H8  B5E 39 
B5E H9  H9  H 0 1 N N N -155.222 197.251 313.307 -3.404 0.191  -2.217 H9  B5E 40 
B5E H10 H10 H 0 1 N N N -152.282 191.429 313.796 -0.976 -1.873 0.477  H10 B5E 41 
B5E H11 H11 H 0 1 N N N -156.269 192.859 314.277 -0.725 2.173  1.807  H11 B5E 42 
B5E H12 H12 H 0 1 N N N -155.926 194.463 312.461 -3.126 2.477  1.365  H12 B5E 43 
B5E H13 H13 H 0 1 N N N -153.678 190.979 315.909 1.059  0.600  2.269  H13 B5E 44 
B5E H14 H14 H 0 1 N N N -155.440 191.317 315.819 0.955  -1.089 1.715  H14 B5E 45 
B5E H15 H15 H 0 1 N N N -154.866 189.020 315.561 1.323  1.234  -0.062 H15 B5E 46 
B5E H17 H17 H 0 1 N N N -155.730 189.327 312.912 3.287  0.781  1.295  H17 B5E 47 
B5E H18 H18 H 0 1 N N N -156.619 190.384 314.061 3.182  -0.907 0.741  H18 B5E 48 
B5E H19 H19 H 0 1 N N N -157.857 188.643 314.661 3.430  -0.151 -1.608 H19 B5E 49 
B5E H20 H20 H 0 1 N N N -156.381 187.853 315.312 3.535  1.537  -1.053 H20 B5E 50 
B5E H21 H21 H 0 1 N N N -157.923 185.701 314.483 5.799  -0.959 -2.088 H21 B5E 51 
B5E H23 H23 H 0 1 N N N -158.276 183.386 312.818 8.654  -1.526 -1.946 H23 B5E 52 
B5E H24 H24 H 0 1 N N N -158.001 182.617 310.481 10.622 -0.968 -0.583 H24 B5E 53 
B5E H25 H25 H 0 1 N N N -156.966 184.088 308.789 10.410 0.533  1.352  H25 B5E 54 
B5E H26 H26 H 0 1 N N N -156.150 186.344 309.419 8.245  1.491  1.949  H26 B5E 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B5E C5  C4  DOUB Y N 1  
B5E C5  C6  SING Y N 2  
B5E C4  C3  SING Y N 3  
B5E C6  C7  DOUB Y N 4  
B5E C18 C17 DOUB Y N 5  
B5E C18 C19 SING Y N 6  
B5E C17 C16 SING Y N 7  
B5E C3  C2  DOUB Y N 8  
B5E F1  C24 SING N N 9  
B5E C19 C20 DOUB Y N 10 
B5E C7  C2  SING Y N 11 
B5E C7  C8  SING N N 12 
B5E C2  C1  SING N N 13 
B5E C16 N1  SING Y N 14 
B5E C16 C21 DOUB Y N 15 
B5E C24 F2  SING N N 16 
B5E C24 F   SING N N 17 
B5E C24 C23 SING N N 18 
B5E C20 C21 SING Y N 19 
B5E C8  C23 DOUB Y N 20 
B5E C8  C9  SING Y N 21 
B5E N1  C15 DOUB Y N 22 
B5E C21 N2  SING Y N 23 
B5E C23 C22 SING Y N 24 
B5E C1  C   SING N N 25 
B5E C9  C10 DOUB Y N 26 
B5E C15 N2  SING Y N 27 
B5E C15 C14 SING N N 28 
B5E C22 C11 DOUB Y N 29 
B5E C10 C11 SING Y N 30 
B5E C13 C14 SING N N 31 
B5E C13 N   SING N N 32 
B5E C11 C12 SING N N 33 
B5E N   C12 SING N N 34 
B5E C6  H1  SING N N 35 
B5E C5  H2  SING N N 36 
B5E C4  H3  SING N N 37 
B5E C3  H4  SING N N 38 
B5E C1  H5  SING N N 39 
B5E C1  H6  SING N N 40 
B5E C   H7  SING N N 41 
B5E C   H8  SING N N 42 
B5E C   H9  SING N N 43 
B5E C22 H10 SING N N 44 
B5E C10 H11 SING N N 45 
B5E C9  H12 SING N N 46 
B5E C12 H13 SING N N 47 
B5E C12 H14 SING N N 48 
B5E N   H15 SING N N 49 
B5E C13 H17 SING N N 50 
B5E C13 H18 SING N N 51 
B5E C14 H19 SING N N 52 
B5E C14 H20 SING N N 53 
B5E N2  H21 SING N N 54 
B5E C20 H23 SING N N 55 
B5E C19 H24 SING N N 56 
B5E C18 H25 SING N N 57 
B5E C17 H26 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B5E InChI            InChI                1.03  "InChI=1S/C25H24F3N3/c1-2-18-7-3-4-8-19(18)20-12-11-17(15-21(20)25(26,27)28)16-29-14-13-24-30-22-9-5-6-10-23(22)31-24/h3-12,15,29H,2,13-14,16H2,1H3,(H,30,31)" 
B5E InChIKey         InChI                1.03  VVMDVSURHYWQPU-UHFFFAOYSA-N                                                                                                                                    
B5E SMILES_CANONICAL CACTVS               3.385 "CCc1ccccc1c2ccc(CNCCc3[nH]c4ccccc4n3)cc2C(F)(F)F"                                                                                                             
B5E SMILES           CACTVS               3.385 "CCc1ccccc1c2ccc(CNCCc3[nH]c4ccccc4n3)cc2C(F)(F)F"                                                                                                             
B5E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCc1ccccc1c2ccc(cc2C(F)(F)F)CNCCc3[nH]c4ccccc4n3"                                                                                                             
B5E SMILES           "OpenEye OEToolkits" 2.0.6 "CCc1ccccc1c2ccc(cc2C(F)(F)F)CNCCc3[nH]c4ccccc4n3"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B5E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-(1~{H}-benzimidazol-2-yl)-~{N}-[[4-(2-ethylphenyl)-3-(trifluoromethyl)phenyl]methyl]ethanamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B5E "Create component" 2017-09-15 EBI  
B5E "Initial release"  2018-02-28 RCSB 
# 
