data_A4E
# 
_chem_comp.id                                    A4E 
_chem_comp.name                                  "1-[6-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-3,3-dimethyl-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-[(2~{R},5~{R})-5-methyl-2-[[(3~{R})-3-methylmorpholin-4-yl]methyl]piperazin-4-ium-1-yl]ethanone" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H43 F N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2017-08-14 
_chem_comp.pdbx_modified_date                    2018-06-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.693 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A4E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5OQW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A4E C1  C1  C 0 1 N N N 25.645 -3.275 -26.345 3.918  -4.117 -2.771 C1  A4E 1  
A4E C2  C2  C 0 1 N N R 24.979 -1.970 -25.932 3.746  -3.526 -1.370 C2  A4E 2  
A4E C3  C3  C 0 1 N N N 24.937 -1.798 -24.416 2.684  -2.424 -1.408 C3  A4E 3  
A4E N4  N1  N 0 1 N N N 24.109 -0.661 -23.991 2.535  -1.845 -0.066 N4  A4E 4  
A4E C5  C4  C 0 1 N N N 24.232 -0.432 -22.544 1.482  -0.821 -0.048 C5  A4E 5  
A4E C6  C5  C 0 1 N N N 23.512 -1.438 -21.660 1.797  0.240  -1.071 C6  A4E 6  
A4E C10 C6  C 0 1 N N N 24.187 -0.282 -18.211 -0.312 2.944  -2.457 C10 A4E 7  
A4E C11 C7  C 0 1 N N N 25.609 -0.729 -17.870 -0.063 4.416  -2.123 C11 A4E 8  
A4E C12 C8  C 0 1 N N N 23.800 0.918  -17.330 -1.009 2.816  -3.813 C12 A4E 9  
A4E C13 C9  C 0 1 Y N N 23.168 -1.393 -18.049 -1.141 2.290  -1.373 C13 A4E 10 
A4E C15 C10 C 0 1 Y N N 21.810 -2.848 -16.943 -2.924 1.865  0.027  C15 A4E 11 
A4E C16 C11 C 0 1 N N N 21.354 -3.308 -15.583 -4.320 2.214  0.477  C16 A4E 12 
A4E O17 O1  O 0 1 N N N 22.145 -4.390 -15.108 -5.267 1.465  -0.286 O17 A4E 13 
A4E C19 C12 C 0 1 N N N 20.306 -4.528 -18.247 -2.901 0.040  1.746  C19 A4E 14 
A4E C21 C13 C 0 1 Y N N 20.372 -6.812 -17.196 -5.061 -0.965 0.977  C21 A4E 15 
A4E C22 C14 C 0 1 Y N N 20.853 -8.104 -17.131 -5.791 -2.006 0.436  C22 A4E 16 
A4E C23 C15 C 0 1 Y N N 21.782 -8.505 -18.041 -5.156 -3.183 0.078  C23 A4E 17 
A4E C25 C16 C 0 1 Y N N 22.257 -7.683 -19.013 -3.790 -3.316 0.262  C25 A4E 18 
A4E C26 C17 C 0 1 Y N N 21.782 -6.388 -19.087 -3.062 -2.273 0.804  C26 A4E 19 
A4E C27 C18 C 0 1 Y N N 21.838 -2.886 -19.379 -0.969 0.511  0.217  C27 A4E 20 
A4E C28 C19 C 0 1 Y N N 22.766 -1.868 -19.290 -0.398 1.263  -0.814 C28 A4E 21 
A4E C35 C20 C 0 1 N N N 20.084 1.611  -20.928 1.444  2.124  2.932  C35 A4E 22 
A4E C36 C21 C 0 1 N N R 20.789 1.808  -22.272 2.272  0.843  3.060  C36 A4E 23 
A4E C37 C22 C 0 1 N N N 21.860 2.889  -22.141 1.367  -0.308 3.504  C37 A4E 24 
A4E C38 C23 C 0 1 N N N 22.837 -0.708 -26.074 4.864  -2.407 0.434  C38 A4E 25 
A4E O7  O2  O 0 1 N N N 23.016 -2.454 -22.134 2.893  0.276  -1.589 O7  A4E 26 
A4E N8  N2  N 0 1 N N N 23.446 -1.153 -20.306 0.861  1.149  -1.409 N8  A4E 27 
A4E C9  C24 C 0 1 N N N 24.045 0.066  -19.709 1.013  2.163  -2.456 C9  A4E 28 
A4E N14 N3  N 0 1 Y N N 22.714 -1.858 -16.922 -2.361 2.556  -0.943 N14 A4E 29 
A4E C18 C25 C 0 1 Y N N 21.328 -3.412 -18.189 -2.249 0.825  0.637  C18 A4E 30 
A4E C20 C26 C 0 1 Y N N 20.833 -5.938 -18.177 -3.696 -1.096 1.156  C20 A4E 31 
A4E F24 F1  F 0 1 N N N 22.254 -9.779 -17.974 -5.869 -4.202 -0.451 F24 A4E 32 
A4E C29 C27 C 0 1 N N R 22.737 -0.605 -24.555 3.812  -1.296 0.411  C29 A4E 33 
A4E C30 C28 C 0 1 N N N 21.892 0.614  -24.148 3.631  -0.735 1.823  C30 A4E 34 
A4E N31 N4  N 0 1 N N N 21.272 0.510  -22.814 2.872  0.521  1.757  N31 A4E 35 
A4E C32 C29 C 0 1 N N N 20.236 -0.532 -22.790 3.722  1.625  1.288  C32 A4E 36 
A4E C33 C30 C 0 1 N N N 19.592 -0.625 -21.420 2.879  2.899  1.178  C33 A4E 37 
A4E O34 O3  O 0 1 N N N 19.044 0.635  -21.024 2.278  3.179  2.446  O34 A4E 38 
A4E N39 N5  N 1 1 N N N 23.575 -1.937 -26.465 5.023  -2.959 -0.918 N39 A4E 39 
A4E H42 H1  H 0 1 N N N 26.674 -3.302 -25.956 4.232  -3.333 -3.460 H42 A4E 40 
A4E H41 H2  H 0 1 N N N 25.076 -4.123 -25.935 4.674  -4.901 -2.744 H41 A4E 41 
A4E H40 H3  H 0 1 N N N 25.667 -3.344 -27.443 2.970  -4.537 -3.107 H40 A4E 42 
A4E H43 H4  H 0 1 N N N 25.545 -1.133 -26.365 3.431  -4.310 -0.681 H43 A4E 43 
A4E H45 H5  H 0 1 N N N 24.527 -2.716 -23.970 2.992  -1.647 -2.107 H45 A4E 44 
A4E H44 H6  H 0 1 N N N 25.963 -1.640 -24.052 1.732  -2.847 -1.730 H44 A4E 45 
A4E H46 H8  H 0 1 N N N 25.301 -0.458 -22.286 0.523  -1.281 -0.285 H46 A4E 46 
A4E H47 H9  H 0 1 N N N 23.826 0.566  -22.323 1.432  -0.368 0.942  H47 A4E 47 
A4E H50 H10 H 0 1 N N N 25.672 -0.968 -16.798 0.448  4.490  -1.163 H50 A4E 48 
A4E H51 H11 H 0 1 N N N 25.864 -1.622 -18.460 0.557  4.865  -2.899 H51 A4E 49 
A4E H52 H12 H 0 1 N N N 26.315 0.081  -18.107 -1.016 4.943  -2.069 H52 A4E 50 
A4E H53 H13 H 0 1 N N N 23.909 0.646  -16.270 -1.971 3.326  -3.776 H53 A4E 51 
A4E H54 H14 H 0 1 N N N 24.458 1.769  -17.560 -0.387 3.268  -4.585 H54 A4E 52 
A4E H55 H15 H 0 1 N N N 22.755 1.198  -17.531 -1.165 1.762  -4.043 H55 A4E 53 
A4E H56 H16 H 0 1 N N N 21.434 -2.469 -14.876 -4.432 1.972  1.534  H56 A4E 54 
A4E H57 H17 H 0 1 N N N 20.305 -3.633 -15.648 -4.494 3.280  0.328  H57 A4E 55 
A4E H58 H18 H 0 1 N N N 21.835 -4.657 -14.251 -6.189 1.639  -0.050 H58 A4E 56 
A4E H59 H19 H 0 1 N N N 19.614 -4.389 -17.403 -2.134 -0.359 2.409  H59 A4E 57 
A4E H60 H20 H 0 1 N N N 19.755 -4.426 -19.194 -3.566 0.693  2.311  H60 A4E 58 
A4E H61 H21 H 0 1 N N N 19.634 -6.477 -16.482 -5.556 -0.046 1.256  H61 A4E 59 
A4E H62 H22 H 0 1 N N N 20.498 -8.785 -16.371 -6.856 -1.901 0.293  H62 A4E 60 
A4E H63 H23 H 0 1 N N N 22.995 -8.037 -19.717 -3.294 -4.234 -0.016 H63 A4E 61 
A4E H64 H24 H 0 1 N N N 22.149 -5.723 -19.855 -1.997 -2.377 0.948  H64 A4E 62 
A4E H65 H25 H 0 1 N N N 21.516 -3.264 -20.338 -0.421 -0.298 0.678  H65 A4E 63 
A4E H74 H26 H 0 1 N N N 20.821 1.277  -20.183 0.623  1.958  2.235  H74 A4E 64 
A4E H73 H27 H 0 1 N N N 19.648 2.569  -20.609 1.043  2.397  3.908  H73 A4E 65 
A4E H75 H28 H 0 1 N N N 20.033 2.193  -22.973 3.061  0.991  3.798  H75 A4E 66 
A4E H77 H29 H 0 1 N N N 21.408 3.806  -21.734 0.580  -0.458 2.765  H77 A4E 67 
A4E H78 H30 H 0 1 N N N 22.653 2.539  -21.464 1.958  -1.220 3.595  H78 A4E 68 
A4E H76 H31 H 0 1 N N N 22.290 3.100  -23.131 0.920  -0.068 4.468  H76 A4E 69 
A4E H80 H32 H 0 1 N N N 23.369 0.173  -26.462 5.816  -1.999 0.774  H80 A4E 70 
A4E H79 H33 H 0 1 N N N 21.824 -0.742 -26.502 4.544  -3.197 1.114  H79 A4E 71 
A4E H49 H34 H 0 1 N N N 25.028 0.278  -20.156 1.171  1.687  -3.424 H49 A4E 72 
A4E H48 H35 H 0 1 N N N 23.384 0.934  -19.848 1.844  2.828  -2.221 H48 A4E 73 
A4E H66 H36 H 0 1 N N N 22.198 -1.498 -24.206 4.138  -0.500 -0.257 H66 A4E 74 
A4E H67 H37 H 0 1 N N N 22.542 1.501  -24.156 3.088  -1.456 2.434  H67 A4E 75 
A4E H68 H38 H 0 1 N N N 21.090 0.740  -24.891 4.609  -0.547 2.267  H68 A4E 76 
A4E H70 H40 H 0 1 N N N 19.464 -0.289 -23.535 4.534  1.787  1.997  H70 A4E 77 
A4E H69 H41 H 0 1 N N N 20.694 -1.501 -23.039 4.135  1.377  0.311  H69 A4E 78 
A4E H71 H42 H 0 1 N N N 18.787 -1.374 -21.451 3.516  3.733  0.885  H71 A4E 79 
A4E H72 H43 H 0 1 N N N 20.351 -0.934 -20.686 2.099  2.755  0.429  H72 A4E 80 
A4E H82 H44 H 0 1 N N N 23.081 -2.732 -26.112 5.726  -3.683 -0.905 H82 A4E 81 
A4E H81 H81 H 0 1 N N N 23.611 -1.983 -27.463 5.308  -2.226 -1.549 H81 A4E 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A4E N39 C38 SING N N 1  
A4E N39 C2  SING N N 2  
A4E C1  C2  SING N N 3  
A4E C38 C29 SING N N 4  
A4E C2  C3  SING N N 5  
A4E C29 C30 SING N N 6  
A4E C29 N4  SING N N 7  
A4E C3  N4  SING N N 8  
A4E C30 N31 SING N N 9  
A4E N4  C5  SING N N 10 
A4E N31 C32 SING N N 11 
A4E N31 C36 SING N N 12 
A4E C32 C33 SING N N 13 
A4E C5  C6  SING N N 14 
A4E C36 C37 SING N N 15 
A4E C36 C35 SING N N 16 
A4E O7  C6  DOUB N N 17 
A4E C6  N8  SING N N 18 
A4E C33 O34 SING N N 19 
A4E O34 C35 SING N N 20 
A4E N8  C9  SING N N 21 
A4E N8  C28 SING N N 22 
A4E C9  C10 SING N N 23 
A4E C27 C28 DOUB Y N 24 
A4E C27 C18 SING Y N 25 
A4E C28 C13 SING Y N 26 
A4E C26 C25 DOUB Y N 27 
A4E C26 C20 SING Y N 28 
A4E C25 C23 SING Y N 29 
A4E C19 C18 SING N N 30 
A4E C19 C20 SING N N 31 
A4E C10 C13 SING N N 32 
A4E C10 C11 SING N N 33 
A4E C10 C12 SING N N 34 
A4E C18 C15 DOUB Y N 35 
A4E C20 C21 DOUB Y N 36 
A4E C13 N14 DOUB Y N 37 
A4E C23 F24 SING N N 38 
A4E C23 C22 DOUB Y N 39 
A4E C21 C22 SING Y N 40 
A4E C15 N14 SING Y N 41 
A4E C15 C16 SING N N 42 
A4E C16 O17 SING N N 43 
A4E C1  H42 SING N N 44 
A4E C1  H41 SING N N 45 
A4E C1  H40 SING N N 46 
A4E C2  H43 SING N N 47 
A4E C3  H45 SING N N 48 
A4E C3  H44 SING N N 49 
A4E C5  H46 SING N N 50 
A4E C5  H47 SING N N 51 
A4E C11 H50 SING N N 52 
A4E C11 H51 SING N N 53 
A4E C11 H52 SING N N 54 
A4E C12 H53 SING N N 55 
A4E C12 H54 SING N N 56 
A4E C12 H55 SING N N 57 
A4E C16 H56 SING N N 58 
A4E C16 H57 SING N N 59 
A4E O17 H58 SING N N 60 
A4E C19 H59 SING N N 61 
A4E C19 H60 SING N N 62 
A4E C21 H61 SING N N 63 
A4E C22 H62 SING N N 64 
A4E C25 H63 SING N N 65 
A4E C26 H64 SING N N 66 
A4E C27 H65 SING N N 67 
A4E C35 H74 SING N N 68 
A4E C35 H73 SING N N 69 
A4E C36 H75 SING N N 70 
A4E C37 H77 SING N N 71 
A4E C37 H78 SING N N 72 
A4E C37 H76 SING N N 73 
A4E C38 H80 SING N N 74 
A4E C38 H79 SING N N 75 
A4E C9  H49 SING N N 76 
A4E C9  H48 SING N N 77 
A4E C29 H66 SING N N 78 
A4E C30 H67 SING N N 79 
A4E C30 H68 SING N N 80 
A4E C32 H70 SING N N 81 
A4E C32 H69 SING N N 82 
A4E C33 H71 SING N N 83 
A4E C33 H72 SING N N 84 
A4E N39 H82 SING N N 85 
A4E N39 H81 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A4E InChI            InChI                1.03  
"InChI=1S/C30H42FN5O3/c1-20-14-35(25(13-32-20)15-34-9-10-39-18-21(34)2)16-28(38)36-19-30(3,4)29-27(36)12-23(26(17-37)33-29)11-22-5-7-24(31)8-6-22/h5-8,12,20-21,25,32,37H,9-11,13-19H2,1-4H3/p+1/t20-,21-,25-/m1/s1" 
A4E InChIKey         InChI                1.03  YCXOHEXZVKOGEV-DNRQZRRGSA-O 
A4E SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CN(CC(=O)N2CC(C)(C)c3nc(CO)c(Cc4ccc(F)cc4)cc23)[C@H](C[NH2+]1)CN5CCOC[C@H]5C" 
A4E SMILES           CACTVS               3.385 "C[CH]1CN(CC(=O)N2CC(C)(C)c3nc(CO)c(Cc4ccc(F)cc4)cc23)[CH](C[NH2+]1)CN5CCOC[CH]5C" 
A4E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1CN([C@H](C[NH2+]1)CN2CCOC[C@H]2C)CC(=O)N3CC(c4c3cc(c(n4)CO)Cc5ccc(cc5)F)(C)C" 
A4E SMILES           "OpenEye OEToolkits" 2.0.6 "CC1CN(C(C[NH2+]1)CN2CCOCC2C)CC(=O)N3CC(c4c3cc(c(n4)CO)Cc5ccc(cc5)F)(C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A4E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-[6-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-3,3-dimethyl-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-[(2~{R},5~{R})-5-methyl-2-[[(3~{R})-3-methylmorpholin-4-yl]methyl]piperazin-4-ium-1-yl]ethanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A4E "Create component" 2017-08-14 EBI  
A4E "Initial release"  2018-06-27 RCSB 
# 
