data_A1AGE
# 
_chem_comp.id                                    A1AGE 
_chem_comp.name                                  "(1R,2S)-2-{[N-({[(2S)-1-benzyl-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H38 N4 O9 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        582.666 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AGE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9ASV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AGE C10 C1  C 0 1 N N S N N N 12.105 22.086 26.843 1.192   0.629  -1.108 C10 A1AGE 1  
A1AGE C11 C2  C 0 1 N N N N N N 13.240 21.838 27.885 1.751   2.007  -1.471 C11 A1AGE 2  
A1AGE C12 C3  C 0 1 N N N N N N 14.612 22.325 27.443 0.815   2.690  -2.469 C12 A1AGE 3  
A1AGE C13 C4  C 0 1 N N N N N N 15.125 21.558 26.244 1.306   4.114  -2.736 C13 A1AGE 4  
A1AGE C14 C5  C 0 1 N N N N N N 15.669 22.179 28.560 0.803   1.901  -3.780 C14 A1AGE 5  
A1AGE C15 C6  C 0 1 N N N N N N 10.756 21.602 27.429 2.174   -0.094 -0.222 C15 A1AGE 6  
A1AGE C02 C7  C 0 1 N N N N N N 9.307  28.282 23.089 -4.551  0.361  1.726  C02 A1AGE 7  
A1AGE C03 C8  C 0 1 N N N N N N 7.896  27.899 23.328 -4.019  1.768  1.882  C03 A1AGE 8  
A1AGE C04 C9  C 0 1 N N N N N N 7.830  27.451 24.759 -4.585  2.525  0.658  C04 A1AGE 9  
A1AGE C05 C10 C 0 1 N N S N N N 9.298  27.177 25.188 -4.810  1.375  -0.347 C05 A1AGE 10 
A1AGE C06 C11 C 0 1 N N N N N N 9.564  25.658 25.091 -3.589  1.220  -1.257 C06 A1AGE 11 
A1AGE C08 C12 C 0 1 N N N N N N 11.014 23.957 25.713 -1.226  0.928  -1.095 C08 A1AGE 12 
A1AGE C17 C13 C 0 1 N N S N N N 9.041  19.769 27.592 4.407   -0.958 0.231  C17 A1AGE 13 
A1AGE C18 C14 C 0 1 N N N N N N 8.013  19.692 26.391 4.582   -0.071 1.465  C18 A1AGE 14 
A1AGE C19 C15 C 0 1 N N S N N N 7.628  21.056 25.777 5.149   1.286  1.042  C19 A1AGE 15 
A1AGE C20 C16 C 0 1 N N N N N N 6.677  20.919 24.601 5.323   2.185  2.246  C20 A1AGE 16 
A1AGE C22 C17 C 0 1 N N N N N N 5.753  22.643 25.989 7.269   2.405  0.998  C22 A1AGE 17 
A1AGE C23 C18 C 0 1 N N N N N N 6.842  21.916 26.793 6.580   1.123  0.480  C23 A1AGE 18 
A1AGE C25 C19 C 0 1 N N R N N N 9.266  18.360 28.158 3.924   -2.344 0.663  C25 A1AGE 19 
A1AGE C30 C20 C 0 1 N N N N N N 11.532 28.082 24.200 -5.578  -1.081 -0.018 C30 A1AGE 20 
A1AGE C31 C21 C 0 1 Y N N N N N 11.968 29.338 24.920 -7.069  -1.054 0.197  C31 A1AGE 21 
A1AGE C32 C22 C 0 1 Y N N N N N 12.883 29.230 25.960 -7.900  -0.550 -0.786 C32 A1AGE 22 
A1AGE C33 C23 C 0 1 Y N N N N N 13.320 30.347 26.661 -9.268  -0.525 -0.589 C33 A1AGE 23 
A1AGE C34 C24 C 0 1 Y N N N N N 12.833 31.607 26.345 -9.805  -1.005 0.591  C34 A1AGE 24 
A1AGE C35 C25 C 0 1 Y N N N N N 11.904 31.729 25.311 -8.974  -1.509 1.574  C35 A1AGE 25 
A1AGE C36 C26 C 0 1 Y N N N N N 11.477 30.604 24.607 -7.607  -1.539 1.374  C36 A1AGE 26 
A1AGE N09 N1  N 0 1 N N N N N N 11.976 23.512 26.551 -0.080  0.789  -0.399 N09 A1AGE 27 
A1AGE N16 N2  N 0 1 N N N N N N 10.317 20.322 27.109 3.419   -0.354 -0.667 N16 A1AGE 28 
A1AGE N21 N3  N 0 1 N N N N N N 5.628  21.836 24.750 6.520   2.795  2.199  N21 A1AGE 29 
A1AGE N29 N4  N 0 1 N N N N N N 10.099 27.841 24.167 -4.992  0.170  0.471  N29 A1AGE 30 
A1AGE O01 O1  O 0 1 N N N N N N 9.722  28.857 22.106 -4.573  -0.475 2.605  O01 A1AGE 31 
A1AGE O07 O2  O 0 1 N N N N N N 10.821 25.292 25.604 -2.395  1.075  -0.444 O07 A1AGE 32 
A1AGE O24 O3  O 0 1 N N N N N N 6.766  20.176 23.662 4.502   2.335  3.126  O24 A1AGE 33 
A1AGE O26 O4  O 0 1 N N N N N N 10.121 18.555 29.249 4.878   -2.924 1.554  O26 A1AGE 34 
A1AGE O27 O5  O 0 1 N N N N N N 10.086 22.353 28.127 1.843   -0.441 0.892  O27 A1AGE 35 
A1AGE O28 O6  O 0 1 N N N N N N 10.309 23.196 25.053 -1.204  0.921  -2.310 O28 A1AGE 36 
A1AGE H1  H1  H 0 1 N N N N N N 12.327 21.522 25.925 1.031   0.051  -2.018 H1  A1AGE 37 
A1AGE H2  H2  H 0 1 N N N N N N 12.973 22.359 28.816 1.829   2.615  -0.570 H2  A1AGE 38 
A1AGE H3  H3  H 0 1 N N N N N N 13.303 20.756 28.075 2.739   1.892  -1.918 H3  A1AGE 39 
A1AGE H4  H4  H 0 1 N N N N N N 14.537 23.389 27.175 -0.193  2.725  -2.056 H4  A1AGE 40 
A1AGE H5  H5  H 0 1 N N N N N N 16.116 21.941 25.959 2.315   4.079  -3.149 H5  A1AGE 41 
A1AGE H6  H6  H 0 1 N N N N N N 15.204 20.491 26.498 0.639   4.601  -3.447 H6  A1AGE 42 
A1AGE H7  H7  H 0 1 N N N N N N 14.428 21.684 25.403 1.315   4.677  -1.803 H7  A1AGE 43 
A1AGE H8  H8  H 0 1 N N N N N N 15.335 22.724 29.455 0.453   0.886  -3.589 H8  A1AGE 44 
A1AGE H9  H9  H 0 1 N N N N N N 15.798 21.115 28.806 0.135   2.388  -4.491 H9  A1AGE 45 
A1AGE H10 H10 H 0 1 N N N N N N 16.627 22.594 28.214 1.811   1.866  -4.192 H10 A1AGE 46 
A1AGE H11 H11 H 0 1 N N N N N N 7.232  28.761 23.166 -4.385  2.214  2.808  H11 A1AGE 47 
A1AGE H12 H12 H 0 1 N N N N N N 7.603  27.079 22.656 -2.930  1.769  1.861  H12 A1AGE 48 
A1AGE H13 H13 H 0 1 N N N N N N 7.389  28.239 25.387 -5.525  3.018  0.904  H13 A1AGE 49 
A1AGE H14 H14 H 0 1 N N N N N N 7.229  26.534 24.845 -3.859  3.243  0.274  H14 A1AGE 50 
A1AGE H15 H15 H 0 1 N N N N N N 9.497  27.557 26.201 -5.702  1.564  -0.944 H15 A1AGE 51 
A1AGE H16 H16 H 0 1 N N N N N N 8.785  25.128 25.658 -3.711  0.336  -1.882 H16 A1AGE 52 
A1AGE H17 H17 H 0 1 N N N N N N 9.515  25.359 24.033 -3.493  2.102  -1.890 H17 A1AGE 53 
A1AGE H18 H18 H 0 1 N N N N N N 8.620  20.414 28.377 5.361   -1.051 -0.288 H18 A1AGE 54 
A1AGE H19 H19 H 0 1 N N N N N N 7.094  19.211 26.758 3.616   0.073  1.949  H19 A1AGE 55 
A1AGE H20 H20 H 0 1 N N N N N N 8.459  19.074 25.598 5.270   -0.551 2.162  H20 A1AGE 56 
A1AGE H21 H21 H 0 1 N N N N N N 8.537  21.591 25.465 4.500   1.755  0.303  H21 A1AGE 57 
A1AGE H22 H22 H 0 1 N N N N N N 6.060  23.673 25.756 8.309   2.197  1.253  H22 A1AGE 58 
A1AGE H23 H23 H 0 1 N N N N N N 4.803  22.660 26.543 7.216   3.192  0.247  H23 A1AGE 59 
A1AGE H24 H24 H 0 1 N N N N N N 6.385  21.275 27.561 7.059   0.232  0.885  H24 A1AGE 60 
A1AGE H25 H25 H 0 1 N N N N N N 7.511  22.645 27.274 6.571   1.098  -0.609 H25 A1AGE 61 
A1AGE S1  S1  S 0 1 N Y N N N N 9.711  17.717 27.428 3.740   -3.403 -0.799 S1  A1AGE 62 
A1AGE H27 H27 H 0 1 N N N N N N 8.294  18.012 28.537 2.963   -2.252 1.169  H27 A1AGE 63 
A1AGE H28 H28 H 0 1 N N N N N N 12.008 27.224 24.698 -5.147  -1.921 0.526  H28 A1AGE 64 
A1AGE H29 H29 H 0 1 N N N N N N 11.888 28.147 23.161 -5.366  -1.190 -1.082 H29 A1AGE 65 
A1AGE H30 H30 H 0 1 N N N N N N 13.263 28.256 26.230 -7.481  -0.175 -1.708 H30 A1AGE 66 
A1AGE H31 H31 H 0 1 N N N N N N 14.042 30.234 27.456 -9.918  -0.131 -1.357 H31 A1AGE 67 
A1AGE H32 H32 H 0 1 N N N N N N 13.167 32.478 26.890 -10.874 -0.986 0.745  H32 A1AGE 68 
A1AGE H33 H33 H 0 1 N N N N N N 11.513 32.702 25.054 -9.394  -1.884 2.496  H33 A1AGE 69 
A1AGE H34 H34 H 0 1 N N N N N N 10.757 30.715 23.810 -6.958  -1.937 2.140  H34 A1AGE 70 
A1AGE H35 H35 H 0 1 N N N N N N 12.605 24.164 26.975 -0.097  0.795  0.570  H35 A1AGE 71 
A1AGE H36 H36 H 0 1 N N N N N N 10.894 19.751 26.525 3.661   -0.143 -1.582 H36 A1AGE 72 
A1AGE H37 H37 H 0 1 N N N N N N 4.879  21.935 24.095 6.847   3.412  2.871  H37 A1AGE 73 
A1AGE H38 H38 H 0 1 N N N N N N 10.310 17.718 29.658 5.027   -2.410 2.360  H38 A1AGE 74 
A1AGE O2  O7  O 0 1 N Y N N N N ?      ?      ?      2.684   -2.704 -1.643 O2  A1AGE 75 
A1AGE O3  O8  O 0 1 N Y N N N N ?      ?      ?      4.914   -3.358 -1.598 O3  A1AGE 76 
A1AGE O1  O9  O 0 1 N Y N N N N ?      ?      ?      3.141   -4.642 -0.444 O1  A1AGE 77 
A1AGE H26 H26 H 0 1 N N N N N N ?      ?      ?      2.476   -3.160 -2.470 H26 A1AGE 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AGE O01 C02 DOUB N N 1  
A1AGE C02 C03 SING N N 2  
A1AGE C02 N29 SING N N 3  
A1AGE C03 C04 SING N N 4  
A1AGE O24 C20 DOUB N N 5  
A1AGE N29 C30 SING N N 6  
A1AGE N29 C05 SING N N 7  
A1AGE C30 C31 SING N N 8  
A1AGE C20 N21 SING N N 9  
A1AGE C20 C19 SING N N 10 
A1AGE C36 C31 DOUB Y N 11 
A1AGE C36 C35 SING Y N 12 
A1AGE N21 C22 SING N N 13 
A1AGE C04 C05 SING N N 14 
A1AGE C31 C32 SING Y N 15 
A1AGE O28 C08 DOUB N N 16 
A1AGE C06 C05 SING N N 17 
A1AGE C06 O07 SING N N 18 
A1AGE C35 C34 DOUB Y N 19 
A1AGE O07 C08 SING N N 20 
A1AGE C08 N09 SING N N 21 
A1AGE C19 C18 SING N N 22 
A1AGE C19 C23 SING N N 23 
A1AGE C32 C33 DOUB Y N 24 
A1AGE C22 C23 SING N N 25 
A1AGE C13 C12 SING N N 26 
A1AGE C34 C33 SING Y N 27 
A1AGE C18 C17 SING N N 28 
A1AGE N09 C10 SING N N 29 
A1AGE C10 C15 SING N N 30 
A1AGE C10 C11 SING N N 31 
A1AGE N16 C15 SING N N 32 
A1AGE N16 C17 SING N N 33 
A1AGE C15 O27 DOUB N N 34 
A1AGE C12 C11 SING N N 35 
A1AGE C12 C14 SING N N 36 
A1AGE C17 C25 SING N N 37 
A1AGE C25 O26 SING N N 38 
A1AGE C10 H1  SING N N 39 
A1AGE C11 H2  SING N N 40 
A1AGE C11 H3  SING N N 41 
A1AGE C12 H4  SING N N 42 
A1AGE C13 H5  SING N N 43 
A1AGE C13 H6  SING N N 44 
A1AGE C13 H7  SING N N 45 
A1AGE C14 H8  SING N N 46 
A1AGE C14 H9  SING N N 47 
A1AGE C14 H10 SING N N 48 
A1AGE C03 H11 SING N N 49 
A1AGE C03 H12 SING N N 50 
A1AGE C04 H13 SING N N 51 
A1AGE C04 H14 SING N N 52 
A1AGE C05 H15 SING N N 53 
A1AGE C06 H16 SING N N 54 
A1AGE C06 H17 SING N N 55 
A1AGE C17 H18 SING N N 56 
A1AGE C18 H19 SING N N 57 
A1AGE C18 H20 SING N N 58 
A1AGE C19 H21 SING N N 59 
A1AGE C22 H22 SING N N 60 
A1AGE C22 H23 SING N N 61 
A1AGE C23 H24 SING N N 62 
A1AGE C23 H25 SING N N 63 
A1AGE C25 S1  SING N N 64 
A1AGE C25 H27 SING N N 65 
A1AGE C30 H28 SING N N 66 
A1AGE C30 H29 SING N N 67 
A1AGE C32 H30 SING N N 68 
A1AGE C33 H31 SING N N 69 
A1AGE C34 H32 SING N N 70 
A1AGE C35 H33 SING N N 71 
A1AGE C36 H34 SING N N 72 
A1AGE N09 H35 SING N N 73 
A1AGE N16 H36 SING N N 74 
A1AGE N21 H37 SING N N 75 
A1AGE O26 H38 SING N N 76 
A1AGE S1  O2  SING N N 77 
A1AGE S1  O3  DOUB N N 78 
A1AGE S1  O1  DOUB N N 79 
A1AGE O2  H26 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AGE SMILES           ACDLabs              12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1Cc1ccccc1)C(O)S(=O)(=O)O"                                                                                                                                                                             
A1AGE InChI            InChI                1.06  "InChI=1S/C26H38N4O9S/c1-16(2)12-20(24(33)28-21(25(34)40(36,37)38)13-18-10-11-27-23(18)32)29-26(35)39-15-19-8-9-22(31)30(19)14-17-6-4-3-5-7-17/h3-7,16,18-21,25,34H,8-15H2,1-2H3,(H,27,32)(H,28,33)(H,29,35)(H,36,37,38)/t18-,19-,20-,21-,25+/m0/s1" 
A1AGE InChIKey         InChI                1.06  AUDFKQBBLRSAHE-ROYUMMMZSA-N                                                                                                                                                                                                                          
A1AGE SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1Cc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                                    
A1AGE SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1Cc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                            
A1AGE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2Cc3ccccc3"                                                                                                                                                         
A1AGE SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2Cc3ccccc3"                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AGE "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-{[N-({[(2S)-1-benzyl-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                                        
A1AGE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[(2~{S})-5-oxidanylidene-1-(phenylmethyl)pyrrolidin-2-yl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AGE "Create component" 2024-02-29 RCSB 
A1AGE "Initial release"  2024-07-10 RCSB 
A1AGE "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1AGE 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
