data_A1AFE
# 
_chem_comp.id                                    A1AFE 
_chem_comp.name                                  "11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H23 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         NZ-804 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-02-23 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AFE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8W1U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AFE C02 C1  C 0 1 N N N N N N -1.802 1.309  17.942 3.220  -1.369 0.695  C02 A1AFE 1  
A1AFE C04 C2  C 0 1 N N N N N N -3.684 2.111  16.423 1.441  0.308  0.680  C04 A1AFE 2  
A1AFE C05 C3  C 0 1 N N N N N N -3.625 2.618  15.000 0.555  0.530  -0.552 C05 A1AFE 3  
A1AFE C06 C4  C 0 1 N N N N N N -3.318 1.579  13.963 -0.473 -0.578 -0.607 C06 A1AFE 4  
A1AFE C07 C5  C 0 1 N N N N N N -2.151 0.733  14.399 0.010  -2.011 -0.548 C07 A1AFE 5  
A1AFE C08 C6  C 0 1 N N N N N N -2.484 0.078  15.744 0.910  -2.169 0.683  C08 A1AFE 6  
A1AFE C09 C7  C 0 1 N N N N N N -4.011 1.474  12.848 -1.778 -0.298 -0.705 C09 A1AFE 7  
A1AFE C10 C8  C 0 1 Y N N N N N -5.210 2.436  12.618 -2.726 -1.417 -0.576 C10 A1AFE 8  
A1AFE C11 C9  C 0 1 Y N N N N N -4.963 3.746  12.142 -2.843 -2.375 -1.584 C11 A1AFE 9  
A1AFE C12 C10 C 0 1 Y N N N N N -6.049 4.599  11.950 -3.728 -3.423 -1.418 C12 A1AFE 10 
A1AFE C13 C11 C 0 1 Y N N N N N -7.354 4.170  12.220 -4.481 -3.515 -0.261 C13 A1AFE 11 
A1AFE C14 C12 C 0 1 Y N N N N N -7.587 2.883  12.691 -4.364 -2.558 0.731  C14 A1AFE 12 
A1AFE C15 C13 C 0 1 Y N N N N N -6.488 2.012  12.891 -3.486 -1.498 0.562  C15 A1AFE 13 
A1AFE C16 C14 C 0 1 N N N N N N -6.757 0.587  13.408 -3.402 -0.433 1.609  C16 A1AFE 14 
A1AFE C20 C15 C 0 1 Y N N N N N -4.579 -0.577 11.445 -3.154 1.763  -0.234 C20 A1AFE 15 
A1AFE C21 C16 C 0 1 Y N N N N N -4.265 -1.518 10.449 -3.437 3.087  -0.583 C21 A1AFE 16 
A1AFE C22 C17 C 0 1 Y N N N N N -3.039 -1.438 9.780  -2.746 3.739  -1.578 C22 A1AFE 17 
A1AFE C23 C18 C 0 1 Y N N N N N -2.133 -0.424 10.101 -1.740 3.080  -2.262 C23 A1AFE 18 
A1AFE C24 C19 C 0 1 Y N N N N N -2.445 0.507  11.081 -1.449 1.777  -1.939 C24 A1AFE 19 
A1AFE C25 C20 C 0 1 Y N N N N N -3.682 0.415  11.769 -2.157 1.104  -0.927 C25 A1AFE 20 
A1AFE C26 C21 C 0 1 Y N N N N N -0.729 0.270  18.271 4.207  -0.279 0.807  C26 A1AFE 21 
A1AFE C27 C22 C 0 1 Y N N N N N -1.158 -0.900 18.953 5.239  -0.143 -0.139 C27 A1AFE 22 
A1AFE C29 C23 C 0 1 Y N N N N N -2.259 -2.514 19.989 6.719  -0.251 -1.818 C29 A1AFE 23 
A1AFE C30 C24 C 0 1 Y N N N N N -0.921 -2.878 19.925 7.096  0.812  -1.089 C30 A1AFE 24 
A1AFE C31 C25 C 0 1 Y N N N N N -0.225 -1.846 19.265 6.151  0.920  0.024  C31 A1AFE 25 
A1AFE C32 C26 C 0 1 Y N N N N N 1.120  -1.612 18.891 6.000  1.787  1.103  C32 A1AFE 26 
A1AFE C34 C27 C 0 1 Y N N N N N 0.601  0.443  17.934 4.135  0.642  1.850  C34 A1AFE 27 
A1AFE N03 N1  N 0 1 N N N N N N -2.625 1.151  16.749 1.902  -1.086 0.686  N03 A1AFE 28 
A1AFE N28 N2  N 0 1 Y N N N N N -2.389 -1.320 19.400 5.610  -0.830 -1.259 N28 A1AFE 29 
A1AFE N33 N3  N 0 1 Y N N N N N 1.469  -0.505 18.258 5.016  1.618  1.964  N33 A1AFE 30 
A1AFE O01 O1  O 0 1 N N N N N N -2.002 2.222  18.662 3.595  -2.522 0.604  O01 A1AFE 31 
A1AFE O18 O2  O 0 1 N N N N N N -6.111 -1.954 13.074 -5.386 0.877  0.461  O18 A1AFE 32 
A1AFE O19 O3  O 0 1 N N N N N N -7.182 -0.839 11.219 -3.997 2.092  2.097  O19 A1AFE 33 
A1AFE S17 S1  S 0 1 N N N N N N -6.189 -0.721 12.289 -4.126 1.117  1.071  S17 A1AFE 34 
A1AFE H1  H1  H 0 1 N N N N N N -3.595 2.971  17.103 2.301  0.977  0.637  H1  A1AFE 35 
A1AFE H2  H2  H 0 1 N N N N N N -4.657 1.621  16.578 0.869  0.508  1.586  H2  A1AFE 36 
A1AFE H3  H3  H 0 1 N N N N N N -2.845 3.392  14.947 0.052  1.494  -0.473 H3  A1AFE 37 
A1AFE H4  H4  H 0 1 N N N N N N -4.601 3.063  14.757 1.167  0.509  -1.453 H4  A1AFE 38 
A1AFE H5  H5  H 0 1 N N N N N N -1.959 -0.046 13.647 -0.845 -2.683 -0.468 H5  A1AFE 39 
A1AFE H6  H6  H 0 1 N N N N N N -1.258 1.365  14.508 0.577  -2.244 -1.450 H6  A1AFE 40 
A1AFE H7  H7  H 0 1 N N N N N N -3.426 -0.484 15.663 0.304  -2.112 1.588  H7  A1AFE 41 
A1AFE H8  H8  H 0 1 N N N N N N -1.673 -0.605 16.038 1.420  -3.131 0.642  H8  A1AFE 42 
A1AFE H9  H9  H 0 1 N N N N N N -3.957 4.077  11.932 -2.250 -2.297 -2.484 H9  A1AFE 43 
A1AFE H10 H10 H 0 1 N N N N N N -5.881 5.603  11.589 -3.831 -4.171 -2.190 H10 A1AFE 44 
A1AFE H11 H11 H 0 1 N N N N N N -8.184 4.842  12.062 -5.166 -4.340 -0.131 H11 A1AFE 45 
A1AFE H12 H12 H 0 1 N N N N N N -8.593 2.551  12.902 -4.953 -2.636 1.633  H12 A1AFE 46 
A1AFE H13 H13 H 0 1 N N N N N N -7.841 0.471  13.554 -3.925 -0.775 2.502  H13 A1AFE 47 
A1AFE H14 H14 H 0 1 N N N N N N -6.242 0.466  14.372 -2.354 -0.264 1.857  H14 A1AFE 48 
A1AFE H15 H15 H 0 1 N N N N N N -4.968 -2.300 10.201 -4.220 3.613  -0.058 H15 A1AFE 49 
A1AFE H16 H16 H 0 1 N N N N N N -2.793 -2.160 9.015  -2.989 4.761  -1.825 H16 A1AFE 50 
A1AFE H17 H17 H 0 1 N N N N N N -1.186 -0.365 9.584  -1.189 3.586  -3.042 H17 A1AFE 51 
A1AFE H18 H18 H 0 1 N N N N N N -1.749 1.298  11.319 -0.664 1.260  -2.471 H18 A1AFE 52 
A1AFE H19 H19 H 0 1 N N N N N N -3.054 -3.092 20.435 7.216  -0.598 -2.712 H19 A1AFE 53 
A1AFE H20 H20 H 0 1 N N N N N N -0.490 -3.790 20.312 7.936  1.462  -1.287 H20 A1AFE 54 
A1AFE H21 H21 H 0 1 N N N N N N 1.873  -2.349 19.126 6.694  2.604  1.236  H21 A1AFE 55 
A1AFE H22 H22 H 0 1 N N N N N N 0.926  1.334  17.417 3.349  0.550  2.585  H22 A1AFE 56 
A1AFE H23 H23 H 0 1 N N N N N N -3.245 -0.813 19.300 5.155  -1.612 -1.608 H23 A1AFE 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AFE C22 C23 DOUB Y N 1  
A1AFE C22 C21 SING Y N 2  
A1AFE C23 C24 SING Y N 3  
A1AFE C21 C20 DOUB Y N 4  
A1AFE C24 C25 DOUB Y N 5  
A1AFE O19 S17 DOUB N N 6  
A1AFE C20 C25 SING Y N 7  
A1AFE C20 S17 SING N N 8  
A1AFE C25 C09 SING N N 9  
A1AFE C12 C11 DOUB Y N 10 
A1AFE C12 C13 SING Y N 11 
A1AFE C11 C10 SING Y N 12 
A1AFE C13 C14 DOUB Y N 13 
A1AFE S17 O18 DOUB N N 14 
A1AFE S17 C16 SING N N 15 
A1AFE C10 C09 SING N N 16 
A1AFE C10 C15 DOUB Y N 17 
A1AFE C14 C15 SING Y N 18 
A1AFE C09 C06 DOUB N N 19 
A1AFE C15 C16 SING N N 20 
A1AFE C06 C07 SING N N 21 
A1AFE C06 C05 SING N N 22 
A1AFE C07 C08 SING N N 23 
A1AFE C05 C04 SING N N 24 
A1AFE C08 N03 SING N N 25 
A1AFE C04 N03 SING N N 26 
A1AFE N03 C02 SING N N 27 
A1AFE C34 N33 DOUB Y N 28 
A1AFE C34 C26 SING Y N 29 
A1AFE C02 C26 SING N N 30 
A1AFE C02 O01 DOUB N N 31 
A1AFE N33 C32 SING Y N 32 
A1AFE C26 C27 DOUB Y N 33 
A1AFE C32 C31 DOUB Y N 34 
A1AFE C27 C31 SING Y N 35 
A1AFE C27 N28 SING Y N 36 
A1AFE C31 C30 SING Y N 37 
A1AFE N28 C29 SING Y N 38 
A1AFE C30 C29 DOUB Y N 39 
A1AFE C04 H1  SING N N 40 
A1AFE C04 H2  SING N N 41 
A1AFE C05 H3  SING N N 42 
A1AFE C05 H4  SING N N 43 
A1AFE C07 H5  SING N N 44 
A1AFE C07 H6  SING N N 45 
A1AFE C08 H7  SING N N 46 
A1AFE C08 H8  SING N N 47 
A1AFE C11 H9  SING N N 48 
A1AFE C12 H10 SING N N 49 
A1AFE C13 H11 SING N N 50 
A1AFE C14 H12 SING N N 51 
A1AFE C16 H13 SING N N 52 
A1AFE C16 H14 SING N N 53 
A1AFE C21 H15 SING N N 54 
A1AFE C22 H16 SING N N 55 
A1AFE C23 H17 SING N N 56 
A1AFE C24 H18 SING N N 57 
A1AFE C29 H19 SING N N 58 
A1AFE C30 H20 SING N N 59 
A1AFE C32 H21 SING N N 60 
A1AFE C34 H22 SING N N 61 
A1AFE N28 H23 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AFE SMILES           ACDLabs              12.01 "O=C(c1cncc2cc[NH]c21)N1CC/C(CC1)=C1/c2ccccc2S(=O)(=O)Cc2ccccc12"                                                                                                         
A1AFE InChI            InChI                1.06  "InChI=1S/C27H23N3O3S/c31-27(23-16-28-15-19-9-12-29-26(19)23)30-13-10-18(11-14-30)25-21-6-2-1-5-20(21)17-34(32,33)24-8-4-3-7-22(24)25/h1-9,12,15-16,29H,10-11,13-14,17H2" 
A1AFE InChIKey         InChI                1.06  SQWIJPFDIKPQCT-UHFFFAOYSA-N                                                                                                                                               
A1AFE SMILES_CANONICAL CACTVS               3.385 "O=C(N1CCC(CC1)=C2c3ccccc3C[S](=O)(=O)c4ccccc24)c5cncc6cc[nH]c56"                                                                                                         
A1AFE SMILES           CACTVS               3.385 "O=C(N1CCC(CC1)=C2c3ccccc3C[S](=O)(=O)c4ccccc24)c5cncc6cc[nH]c56"                                                                                                         
A1AFE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CS(=O)(=O)c3ccccc3C2=C4CCN(CC4)C(=O)c5cncc6c5[nH]cc6"                                                                                                         
A1AFE SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CS(=O)(=O)c3ccccc3C2=C4CCN(CC4)C(=O)c5cncc6c5[nH]cc6"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AFE "SYSTEMATIC NAME" ACDLabs              12.01 "11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione"      
A1AFE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-[5,5-bis(oxidanylidene)-6~{H}-benzo[c][1]benzothiepin-11-ylidene]piperidin-1-yl]-(1~{H}-pyrrolo[3,2-c]pyridin-7-yl)methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AFE "Create component" 2024-02-23 RCSB 
A1AFE "Modify synonyms"  2024-02-25 RCSB 
A1AFE "Initial release"  2024-11-20 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1AFE 
_pdbx_chem_comp_synonyms.name         NZ-804 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         "name usedin entry title by the authors" 
# 
