data_98E
# 
_chem_comp.id                                    98E 
_chem_comp.name                                  "(S)-N-(5-chloro-3-((4-(cyclopentanecarbonyl)-3-methylpiperazin-1-yl)methyl)-2-methylphenyl)-2-methylpyrimidine-5-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H32 Cl N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-28 
_chem_comp.pdbx_modified_date                    2017-06-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        470.007 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     98E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NTP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
98E C2  C1  C  0 1 N N N 19.411 12.831 23.694 2.332  1.483  0.173  C2  98E 1  
98E C3  C2  C  0 1 N N N 20.787 12.188 23.399 3.043  0.502  1.112  C3  98E 2  
98E C11 C3  C  0 1 N N N 25.938 13.458 23.750 8.501  -2.191 0.777  C11 98E 3  
98E C12 C4  C  0 1 N N N 22.612 13.180 22.046 5.387  -0.178 0.870  C12 98E 4  
98E C14 C5  C  0 1 N N N 20.211 11.343 20.216 2.939  -1.987 -0.723 C14 98E 5  
98E C15 C6  C  0 1 Y N N 14.943 11.985 19.928 -2.442 1.102  -0.652 C15 98E 6  
98E C16 C7  C  0 1 Y N N 14.308 13.182 19.570 -2.686 2.300  0.006  C16 98E 7  
98E C17 C8  C  0 1 Y N N 14.622 14.353 20.277 -1.708 3.277  0.045  C17 98E 8  
98E C18 C9  C  0 1 Y N N 15.549 14.347 21.315 -0.488 3.061  -0.572 C18 98E 9  
98E C19 C10 C  0 1 Y N N 16.185 13.155 21.669 -0.243 1.868  -1.227 C19 98E 10 
98E C20 C11 C  0 1 Y N N 15.888 11.964 20.975 -1.216 0.889  -1.269 C20 98E 11 
98E C21 C12 C  0 1 N N N 16.567 10.617 21.328 -0.947 -0.411 -1.984 C21 98E 12 
98E C23 C13 C  0 1 N N N 17.177 13.246 22.837 1.087  1.637  -1.898 C23 98E 13 
98E C25 C14 C  0 1 Y N N 14.425 6.693  16.264 -7.066 -3.107 0.366  C25 98E 14 
98E C27 C15 C  0 1 Y N N 14.987 8.119  18.031 -6.272 -1.180 1.334  C27 98E 15 
98E C28 C16 C  0 1 Y N N 14.581 9.237  17.286 -5.311 -1.083 0.321  C28 98E 16 
98E C29 C17 C  0 1 Y N N 14.110 9.014  15.984 -5.293 -2.073 -0.668 C29 98E 17 
98E N1  N1  N  0 1 N N N 18.534 12.764 22.499 1.921  0.777  -1.048 N1  98E 18 
98E N4  N2  N  0 1 N N N 21.330 12.716 22.137 4.135  -0.146 0.370  N4  98E 19 
98E C5  C18 C  0 1 N N S 20.470 12.699 20.933 3.826  -0.758 -0.931 C5  98E 20 
98E C6  C19 C  0 1 N N N 19.150 13.422 21.311 3.084  0.273  -1.789 C6  98E 21 
98E C7  C20 C  0 1 N N N 24.958 12.604 22.928 7.808  -0.823 0.901  C7  98E 22 
98E C8  C21 C  0 1 N N N 23.559 13.216 23.238 6.468  -0.937 0.145  C8  98E 23 
98E C9  C22 C  0 1 N N N 23.835 14.652 23.783 6.159  -2.455 0.147  C9  98E 24 
98E C10 C23 C  0 1 N N N 25.353 14.873 23.571 7.559  -3.090 -0.050 C10 98E 25 
98E O13 O1  O  0 1 N N N 23.073 13.602 20.991 5.642  0.404  1.903  O13 98E 26 
98E CL  CL  CL 0 0 N N N 13.862 15.869 19.897 -2.011 4.775  0.867  CL  98E 27 
98E N24 N3  N  0 1 N N N 14.713 10.758 19.254 -3.426 0.109  -0.688 N24 98E 28 
98E N26 N4  N  0 1 Y N N 14.899 6.876  17.515 -7.118 -2.195 1.317  N26 98E 29 
98E N30 N5  N  0 1 Y N N 14.040 7.748  15.511 -6.177 -3.053 -0.607 N30 98E 30 
98E C31 C24 C  0 1 N N N 14.336 5.282  15.695 -8.049 -4.248 0.394  C31 98E 31 
98E C32 C25 C  0 1 N N N 14.742 10.604 17.911 -4.344 0.034  0.297  C32 98E 32 
98E O33 O2  O  0 1 N N N 14.932 11.538 17.145 -4.375 0.885  1.164  O33 98E 33 
98E H1  H1  H  0 1 N N N 19.557 13.884 23.976 1.452  1.891  0.671  H1  98E 34 
98E H2  H2  H  0 1 N N N 18.931 12.292 24.525 3.011  2.295  -0.087 H2  98E 35 
98E H3  H3  H  0 1 N N N 20.669 11.097 23.317 3.451  1.043  1.966  H3  98E 36 
98E H4  H4  H  0 1 N N N 21.481 12.421 24.220 2.335  -0.250 1.459  H4  98E 37 
98E H5  H5  H  0 1 N N N 25.941 13.157 24.808 9.457  -2.080 0.264  H5  98E 38 
98E H6  H6  H  0 1 N N N 26.960 13.394 23.348 8.656  -2.622 1.766  H6  98E 39 
98E H7  H7  H  0 1 N N N 21.172 10.869 19.968 2.697  -2.428 -1.690 H7  98E 40 
98E H8  H8  H  0 1 N N N 19.636 10.681 20.880 3.469  -2.718 -0.112 H8  98E 41 
98E H9  H9  H  0 1 N N N 19.641 11.520 19.292 2.019  -1.691 -0.219 H9  98E 42 
98E H10 H10 H  0 1 N N N 13.589 13.203 18.764 -3.638 2.469  0.487  H10 98E 43 
98E H11 H11 H  0 1 N N N 15.776 15.260 21.845 0.274  3.825  -0.541 H11 98E 44 
98E H12 H12 H  0 1 N N N 17.486 10.502 20.734 -1.168 -0.294 -3.045 H12 98E 45 
98E H13 H13 H  0 1 N N N 16.819 10.603 22.399 0.100  -0.684 -1.859 H13 98E 46 
98E H14 H14 H  0 1 N N N 15.879 9.789  21.102 -1.580 -1.193 -1.565 H14 98E 47 
98E H15 H15 H  0 1 N N N 17.249 14.298 23.151 0.929  1.152  -2.861 H15 98E 48 
98E H16 H16 H  0 1 N N N 16.790 12.641 23.670 1.588  2.593  -2.050 H16 98E 49 
98E H17 H17 H  0 1 N N N 15.375 8.256  19.030 -6.321 -0.438 2.117  H17 98E 50 
98E H18 H18 H  0 1 N N N 13.806 9.845  15.365 -4.569 -2.036 -1.468 H18 98E 51 
98E H20 H20 H  0 1 N N N 20.961 13.342 20.188 4.750  -1.053 -1.429 H20 98E 52 
98E H21 H21 H  0 1 N N N 19.365 14.474 21.548 2.750  -0.197 -2.714 H21 98E 53 
98E H22 H22 H  0 1 N N N 18.451 13.372 20.463 3.753  1.101  -2.023 H22 98E 54 
98E H23 H23 H  0 1 N N N 25.001 11.551 23.242 7.626  -0.591 1.951  H23 98E 55 
98E H24 H24 H  0 1 N N N 25.185 12.676 21.854 8.427  -0.048 0.449  H24 98E 56 
98E H25 H25 H  0 1 N N N 23.109 12.629 24.052 6.573  -0.569 -0.875 H25 98E 57 
98E H26 H26 H  0 1 N N N 23.253 15.398 23.221 5.728  -2.760 1.101  H26 98E 58 
98E H27 H27 H  0 1 N N N 23.580 14.716 24.851 5.494  -2.715 -0.676 H27 98E 59 
98E H28 H28 H  0 1 N N N 25.760 15.567 24.321 7.841  -3.072 -1.103 H28 98E 60 
98E H29 H29 H  0 1 N N N 25.559 15.261 22.563 7.573  -4.111 0.332  H29 98E 61 
98E H30 H30 H  0 1 N N N 14.516 9.951  19.811 -3.449 -0.525 -1.421 H30 98E 62 
98E H31 H31 H  0 1 N N N 13.939 5.324  14.670 -8.943 -3.972 -0.164 H31 98E 63 
98E H32 H32 H  0 1 N N N 15.338 4.828  15.682 -7.595 -5.130 -0.060 H32 98E 64 
98E H33 H33 H  0 1 N N N 13.667 4.675  16.323 -8.318 -4.470 1.426  H33 98E 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
98E N30 C29 DOUB Y N 1  
98E N30 C25 SING Y N 2  
98E C31 C25 SING N N 3  
98E C29 C28 SING Y N 4  
98E C25 N26 DOUB Y N 5  
98E O33 C32 DOUB N N 6  
98E C28 C32 SING N N 7  
98E C28 C27 DOUB Y N 8  
98E N26 C27 SING Y N 9  
98E C32 N24 SING N N 10 
98E N24 C15 SING N N 11 
98E C16 C15 DOUB Y N 12 
98E C16 C17 SING Y N 13 
98E CL  C17 SING N N 14 
98E C15 C20 SING Y N 15 
98E C14 C5  SING N N 16 
98E C17 C18 DOUB Y N 17 
98E C5  C6  SING N N 18 
98E C5  N4  SING N N 19 
98E C20 C21 SING N N 20 
98E C20 C19 DOUB Y N 21 
98E O13 C12 DOUB N N 22 
98E C6  N1  SING N N 23 
98E C18 C19 SING Y N 24 
98E C19 C23 SING N N 25 
98E C12 N4  SING N N 26 
98E C12 C8  SING N N 27 
98E N4  C3  SING N N 28 
98E N1  C23 SING N N 29 
98E N1  C2  SING N N 30 
98E C7  C8  SING N N 31 
98E C7  C11 SING N N 32 
98E C8  C9  SING N N 33 
98E C3  C2  SING N N 34 
98E C10 C11 SING N N 35 
98E C10 C9  SING N N 36 
98E C2  H1  SING N N 37 
98E C2  H2  SING N N 38 
98E C3  H3  SING N N 39 
98E C3  H4  SING N N 40 
98E C11 H5  SING N N 41 
98E C11 H6  SING N N 42 
98E C14 H7  SING N N 43 
98E C14 H8  SING N N 44 
98E C14 H9  SING N N 45 
98E C16 H10 SING N N 46 
98E C18 H11 SING N N 47 
98E C21 H12 SING N N 48 
98E C21 H13 SING N N 49 
98E C21 H14 SING N N 50 
98E C23 H15 SING N N 51 
98E C23 H16 SING N N 52 
98E C27 H17 SING N N 53 
98E C29 H18 SING N N 54 
98E C5  H20 SING N N 55 
98E C6  H21 SING N N 56 
98E C6  H22 SING N N 57 
98E C7  H23 SING N N 58 
98E C7  H24 SING N N 59 
98E C8  H25 SING N N 60 
98E C9  H26 SING N N 61 
98E C9  H27 SING N N 62 
98E C10 H28 SING N N 63 
98E C10 H29 SING N N 64 
98E N24 H30 SING N N 65 
98E C31 H31 SING N N 66 
98E C31 H32 SING N N 67 
98E C31 H33 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
98E InChI            InChI                1.03  "InChI=1S/C25H32ClN5O2/c1-16-14-30(8-9-31(16)25(33)19-6-4-5-7-19)15-20-10-22(26)11-23(17(20)2)29-24(32)21-12-27-18(3)28-13-21/h10-13,16,19H,4-9,14-15H2,1-3H3,(H,29,32)/t16-/m0/s1" 
98E InChIKey         InChI                1.03  HAXBJJXPLDXDIL-INIZCTEOSA-N                                                                                                                                                         
98E SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CN(CCN1C(=O)C2CCCC2)Cc3cc(Cl)cc(NC(=O)c4cnc(C)nc4)c3C"                                                                                                                      
98E SMILES           CACTVS               3.385 "C[CH]1CN(CCN1C(=O)C2CCCC2)Cc3cc(Cl)cc(NC(=O)c4cnc(C)nc4)c3C"                                                                                                                       
98E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(cc(cc1NC(=O)c2cnc(nc2)C)Cl)CN3CCN([C@H](C3)C)C(=O)C4CCCC4"                                                                                                                    
98E SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(cc(cc1NC(=O)c2cnc(nc2)C)Cl)CN3CCN(C(C3)C)C(=O)C4CCCC4"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
98E "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[5-chloranyl-3-[[(3~{S})-4-cyclopentylcarbonyl-3-methyl-piperazin-1-yl]methyl]-2-methyl-phenyl]-2-methyl-pyrimidine-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
98E "Create component" 2017-04-28 EBI  
98E "Initial release"  2017-06-21 RCSB 
# 
