data_8RE
# 
_chem_comp.id                                    8RE 
_chem_comp.name                                  3,4-dihydroxylysine 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H14 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        178.186 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     8RE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N9Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8RE O   O1  O 0 1 N N N Y N Y 3.776 -21.097 75.759 -3.337 -0.421 -0.891 O   8RE 1  
8RE C   C1  C 0 1 N N N Y N Y 3.402 -21.221 76.918 -2.715 0.187  -0.052 C   8RE 2  
8RE CA  C2  C 0 1 N N S Y N N 4.212 -22.082 77.897 -1.426 -0.378 0.488  CA  8RE 3  
8RE N   N1  N 0 1 N N N Y Y N 3.850 -21.778 79.262 -1.380 -1.824 0.230  N   8RE 4  
8RE CB  C3  C 0 1 N N R N N N 3.879 -23.560 78.101 -0.242 0.302  -0.203 CB  8RE 5  
8RE OH1 O2  O 0 1 N N N N N N 2.655 -24.009 77.540 -0.288 1.708  0.047  OH1 8RE 6  
8RE CG  C4  C 0 1 N N S N N N 5.065 -24.543 78.041 1.066  -0.272 0.345  CG  8RE 7  
8RE OH2 O3  O 0 1 N N N N N N 4.684 -25.791 77.442 1.111  -1.678 0.095  OH2 8RE 8  
8RE CD  C5  C 0 1 N N N N N N 6.377 -24.010 77.461 2.250  0.408  -0.345 CD  8RE 9  
8RE CE  C6  C 0 1 N N N N N N 7.420 -25.073 77.789 3.556  -0.074 0.289  CE  8RE 10 
8RE NZ  N2  N 0 1 N N N N N N 8.699 -24.756 77.185 4.693  0.578  -0.374 NZ  8RE 11 
8RE HA  H2  H 0 1 N N N Y N N 5.290 -21.951 77.722 -1.373 -0.198 1.561  H2  8RE 12 
8RE H   H3  H 0 1 N N N Y Y N 4.387 -22.347 79.884 -2.114 -2.303 0.729  H3  8RE 13 
8RE H2  H4  H 0 1 N Y N Y Y N 4.036 -20.813 79.449 -1.428 -2.016 -0.759 H4  8RE 14 
8RE HB2 H6  H 0 1 N N N N N N 3.652 -23.576 79.177 -0.296 0.122  -1.277 H6  8RE 15 
8RE H7  H7  H 0 1 N N N N N N 2.544 -24.935 77.722 -0.244 1.942  0.984  H7  8RE 16 
8RE HG2 H8  H 0 1 N N N N N N 5.293 -24.771 79.093 1.119  -0.092 1.419  H8  8RE 17 
8RE H9  H9  H 0 1 N N N N N N 3.868 -26.091 77.825 1.068  -1.912 -0.842 H9  8RE 18 
8RE HD2 H10 H 0 1 N N N N N N 6.644 -23.051 77.928 2.246  0.155  -1.406 H10 8RE 19 
8RE HD3 H11 H 0 1 N N N N N N 6.291 -23.876 76.372 2.167  1.488  -0.229 H11 8RE 20 
8RE HE2 H12 H 0 1 N N N N N N 7.074 -26.045 77.407 3.559  0.179  1.350  H12 8RE 21 
8RE HE3 H13 H 0 1 N N N N N N 7.543 -25.130 78.881 3.639  -1.155 0.174  H13 8RE 22 
8RE HZ1 H14 H 0 1 N N N N N N 9.363 -25.468 77.416 4.605  1.583  -0.336 H14 8RE 23 
8RE HZ2 H15 H 0 1 N N N N N N 8.595 -24.706 76.192 5.568  0.276  0.028  H15 8RE 24 
8RE OXT O4  O 0 1 N Y N Y N Y 2.328 -20.578 77.377 -3.169 1.368  0.394  O1  8RE 25 
8RE HXT H1  H 0 1 N Y N Y N Y 1.951 -20.053 76.681 -3.998 1.692  0.015  H1  8RE 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8RE O   C   DOUB N N 1  
8RE C   CA  SING N N 2  
8RE NZ  CE  SING N N 3  
8RE OH2 CG  SING N N 4  
8RE CD  CE  SING N N 5  
8RE CD  CG  SING N N 6  
8RE OH1 CB  SING N N 7  
8RE CA  CB  SING N N 8  
8RE CA  N   SING N N 9  
8RE CG  CB  SING N N 10 
8RE CA  HA  SING N N 11 
8RE N   H   SING N N 12 
8RE N   H2  SING N N 13 
8RE CB  HB2 SING N N 14 
8RE OH1 H7  SING N N 15 
8RE CG  HG2 SING N N 16 
8RE OH2 H9  SING N N 17 
8RE CD  HD2 SING N N 18 
8RE CD  HD3 SING N N 19 
8RE CE  HE2 SING N N 20 
8RE CE  HE3 SING N N 21 
8RE NZ  HZ1 SING N N 22 
8RE NZ  HZ2 SING N N 23 
8RE C   OXT SING N N 24 
8RE OXT HXT SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8RE InChI            InChI                1.03  "InChI=1S/C6H14N2O4/c7-2-1-3(9)5(10)4(8)6(11)12/h3-5,9-10H,1-2,7-8H2,(H,11,12)/t3-,4-,5-/m0/s1" 
8RE InChIKey         InChI                1.03  ALWBRQWTMGZSIM-YUPRTTJUSA-N                                                                     
8RE SMILES_CANONICAL CACTVS               3.385 "NCC[C@H](O)[C@H](O)[C@H](N)C(O)=O"                                                             
8RE SMILES           CACTVS               3.385 "NCC[CH](O)[CH](O)[CH](N)C(O)=O"                                                                
8RE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(CN)[C@@H]([C@@H]([C@@H](C(=O)O)N)O)O"                                                        
8RE SMILES           "OpenEye OEToolkits" 2.0.6 "C(CN)C(C(C(C(=O)O)N)O)O"                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           8RE 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{R},4~{S})-2,6-bis(azanyl)-3,4-bis(oxidanyl)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8RE "Create component"       2017-02-28 EBI  
8RE "Initial release"        2018-03-14 RCSB 
8RE "Modify one letter code" 2019-05-03 EBI  
8RE "Modify backbone"        2023-11-03 PDBE 
8RE "Modify PCM"             2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8RE 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               Hydroxylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
