data_6RE
# 
_chem_comp.id                                    6RE 
_chem_comp.name                                  "[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]-azanyl-methylidene]azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2016-06-02 
_chem_comp.pdbx_modified_date                    2016-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.331 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6RE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5K8V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6RE N1     N1  N 0 1 Y N N 51.034 42.150 126.319 -5.463 0.622  0.447  N1     6RE 1  
6RE C2     C1  C 0 1 Y N N 50.843 42.055 127.639 -4.920 -0.495 0.894  C2     6RE 2  
6RE N3     N2  N 0 1 Y N N 50.623 40.964 128.378 -3.627 -0.733 0.817  N3     6RE 3  
6RE C4     C2  C 0 1 Y N N 50.604 39.865 127.616 -2.805 0.161  0.277  C4     6RE 4  
6RE C5     C3  C 0 1 Y N N 50.789 39.804 126.244 -3.334 1.366  -0.213 C5     6RE 5  
6RE C6     C4  C 0 1 Y N N 51.015 41.022 125.577 -4.720 1.574  -0.109 C6     6RE 6  
6RE N6     N3  N 0 1 N N N 51.214 41.124 124.260 -5.298 2.742  -0.575 N6     6RE 7  
6RE N7     N4  N 0 1 Y N N 50.706 38.495 125.795 -2.297 2.087  -0.703 N7     6RE 8  
6RE C8     C5  C 0 1 Y N N 50.476 37.806 126.887 -1.192 1.417  -0.549 C8     6RE 9  
6RE N9     N5  N 0 1 Y N N 50.399 38.568 128.023 -1.453 0.221  0.052  N9     6RE 10 
6RE "C1'"  C6  C 0 1 N N R 50.139 38.102 129.381 -0.470 -0.809 0.394  "C1'"  6RE 11 
6RE "C2'"  C7  C 0 1 N N R 48.861 37.275 129.535 -0.384 -1.876 -0.728 "C2'"  6RE 12 
6RE "O2'"  O1  O 0 1 N N N 47.734 38.107 129.789 -1.370 -2.893 -0.540 "O2'"  6RE 13 
6RE "C3'"  C8  C 0 1 N N S 49.229 36.413 130.740 1.041  -2.444 -0.527 "C3'"  6RE 14 
6RE "O3'"  O2  O 0 1 N N N 49.066 37.107 131.972 0.995  -3.655 0.231  "O3'"  6RE 15 
6RE "C4'"  C9  C 0 1 N N R 50.695 36.100 130.468 1.779  -1.343 0.260  "C4'"  6RE 16 
6RE "O4'"  O3  O 0 1 N N N 51.209 37.263 129.780 0.861  -0.251 0.430  "O4'"  6RE 17 
6RE "C5'"  C10 C 0 1 N N N 50.959 34.902 129.582 3.007  -0.877 -0.524 "C5'"  6RE 18 
6RE "C6'"  C11 C 0 1 N N N 51.337 33.690 130.408 3.801  0.123  0.318  "C6'"  6RE 19 
6RE "N7'"  N6  N 0 1 N N N 51.498 32.496 129.586 4.977  0.570  -0.433 "N7'"  6RE 20 
6RE "C8'"  C12 C 0 1 N N N 52.635 31.860 129.340 5.842  1.472  0.123  "C8'"  6RE 21 
6RE "N9'"  N7  N 1 1 N N N 52.641 30.796 128.558 6.911  1.878  -0.560 "N9'"  6RE 22 
6RE N10    N8  N 0 1 N N N 53.770 32.289 129.866 5.614  1.945  1.347  N10    6RE 23 
6RE H2     H1  H 0 1 N N N 50.870 42.988 128.182 -5.560 -1.243 1.339  H2     6RE 24 
6RE HN6    H2  H 0 1 N N N 51.355 42.084 124.017 -4.746 3.429  -0.979 HN6    6RE 25 
6RE HN6A   H3  H 0 0 N N N 52.022 40.593 124.003 -6.256 2.873  -0.497 HN6A   6RE 26 
6RE H8     H4  H 0 1 N N N 50.358 36.733 126.890 -0.213 1.758  -0.851 H8     6RE 27 
6RE "H1'"  H5  H 0 1 N N N 50.073 38.969 130.055 -0.720 -1.275 1.348  "H1'"  6RE 28 
6RE "H2'"  H6  H 0 1 N N N 48.709 36.643 128.648 -0.486 -1.415 -1.710 "H2'"  6RE 29 
6RE "HO2'" H7  H 0 0 N N N 46.957 37.569 129.880 -1.356 -3.583 -1.217 "HO2'" 6RE 30 
6RE "H3'"  H8  H 0 1 N N N 48.641 35.484 130.725 1.523  -2.615 -1.490 "H3'"  6RE 31 
6RE "HO3'" H9  H 0 0 N N N 49.305 36.535 132.692 0.492  -4.364 -0.192 "HO3'" 6RE 32 
6RE "H4'"  H10 H 0 1 N N N 51.218 35.964 131.426 2.085  -1.725 1.234  "H4'"  6RE 33 
6RE "H5'"  H11 H 0 1 N N N 51.783 35.139 128.893 3.637  -1.736 -0.757 "H5'"  6RE 34 
6RE "H5'A" H12 H 0 0 N N N 50.051 34.675 129.004 2.688  -0.400 -1.450 "H5'A" 6RE 35 
6RE "H6'A" H13 H 0 0 N N N 52.286 33.895 130.926 3.171  0.982  0.551  "H6'A" 6RE 36 
6RE "H6'"  H14 H 0 1 N N N 50.547 33.506 131.150 4.121  -0.354 1.244  "H6'"  6RE 37 
6RE "HN7'" H15 H 0 0 N N N 50.671 32.121 129.168 5.143  0.225  -1.325 "HN7'" 6RE 38 
6RE "HN9'" H16 H 0 0 N N N 53.500 30.321 128.367 7.077  1.533  -1.452 "HN9'" 6RE 39 
6RE HN9A   H17 H 0 0 N N N 53.774 33.098 130.454 4.836  1.650  1.844  HN9A   6RE 40 
6RE HN9B   H18 H 0 0 N N N 54.624 31.804 129.676 6.227  2.585  1.741  HN9+   6RE 41 
6RE HN9C   H19 H 0 0 N N N 51.787 30.466 128.157 7.524  2.518  -0.166 H1     6RE 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6RE N6    C6     SING N N 1  
6RE C6    C5     DOUB Y N 2  
6RE C6    N1     SING Y N 3  
6RE N7    C5     SING Y N 4  
6RE N7    C8     DOUB Y N 5  
6RE C5    C4     SING Y N 6  
6RE N1    C2     DOUB Y N 7  
6RE C8    N9     SING Y N 8  
6RE C4    N9     SING Y N 9  
6RE C4    N3     DOUB Y N 10 
6RE C2    N3     SING Y N 11 
6RE N9    "C1'"  SING N N 12 
6RE "N9'" "C8'"  DOUB N N 13 
6RE "C8'" "N7'"  SING N N 14 
6RE "C8'" N10    SING N N 15 
6RE "C1'" "C2'"  SING N N 16 
6RE "C1'" "O4'"  SING N N 17 
6RE "C2'" "O2'"  SING N N 18 
6RE "C2'" "C3'"  SING N N 19 
6RE "C5'" "C6'"  SING N N 20 
6RE "C5'" "C4'"  SING N N 21 
6RE "N7'" "C6'"  SING N N 22 
6RE "O4'" "C4'"  SING N N 23 
6RE "C4'" "C3'"  SING N N 24 
6RE "C3'" "O3'"  SING N N 25 
6RE C2    H2     SING N N 26 
6RE N6    HN6    SING N N 27 
6RE N6    HN6A   SING N N 28 
6RE C8    H8     SING N N 29 
6RE "C1'" "H1'"  SING N N 30 
6RE "C2'" "H2'"  SING N N 31 
6RE "O2'" "HO2'" SING N N 32 
6RE "C3'" "H3'"  SING N N 33 
6RE "O3'" "HO3'" SING N N 34 
6RE "C4'" "H4'"  SING N N 35 
6RE "C5'" "H5'"  SING N N 36 
6RE "C5'" "H5'A" SING N N 37 
6RE "C6'" "H6'A" SING N N 38 
6RE "C6'" "H6'"  SING N N 39 
6RE "N7'" "HN7'" SING N N 40 
6RE "N9'" "HN9'" SING N N 41 
6RE N10   HN9A   SING N N 42 
6RE N10   HN9B   SING N N 43 
6RE "N9'" HN9C   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6RE InChI            InChI                1.03  "InChI=1S/C12H18N8O3/c13-9-6-10(18-3-17-9)20(4-19-6)11-8(22)7(21)5(23-11)1-2-16-12(14)15/h3-5,7-8,11,21-22H,1-2H2,(H2,13,17,18)(H4,14,15,16)/p+1/t5-,7-,8-,11-/m1/s1" 
6RE InChIKey         InChI                1.03  OIGRVZYOOMUALG-IOSLPCCCSA-O                                                                                                                                           
6RE SMILES_CANONICAL CACTVS               3.385 "NC(=[NH2+])NCC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                                        
6RE SMILES           CACTVS               3.385 "NC(=[NH2+])NCC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                             
6RE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CCNC(=[NH2+])N)O)O)N"                                                                                                 
6RE SMILES           "OpenEye OEToolkits" 2.0.5 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CCNC(=[NH2+])N)O)O)N"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6RE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]-azanyl-methylidene]azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6RE "Create component" 2016-06-02 EBI  
6RE "Initial release"  2016-11-09 RCSB 
# 
