data_52E
# 
_chem_comp.id                                    52E 
_chem_comp.name                                  "4-{[(2-chloro-3-fluorobenzyl)carbamoyl](methyl)amino}-3,4-dideoxy-5-O-(isoquinolin-3-ylcarbamoyl)-D-erythro-pentitol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 Cl F N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-15 
_chem_comp.pdbx_modified_date                    2016-11-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.938 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     52E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5CK8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
52E N1  N1  N  0 1 N N N 11.504 18.704 -25.065 -3.043 0.383  0.854  N1   52E 1  
52E C6  C1  C  0 1 Y N N 8.139  19.950 -26.374 -5.623 1.842  -0.244 C6   52E 2  
52E N3  N2  N  0 1 N N N 12.098 23.967 -22.945 3.650  -0.471 -0.435 N3   52E 3  
52E C5  C2  C  0 1 Y N N 7.506  21.103 -26.699 -6.170 2.936  -0.894 C5   52E 4  
52E C15 C3  C  0 1 N N N 14.060 18.453 -20.950 -0.361 -3.288 0.011  C15  52E 5  
52E C16 C4  C  0 1 N N R 13.317 17.148 -20.647 -1.746 -3.838 -0.334 C16  52E 6  
52E C17 C5  C  0 1 N N N 12.661 17.202 -19.266 -1.606 -4.966 -1.359 C17  52E 7  
52E O30 O1  O  0 1 N N N 11.407 16.621 -19.079 -2.885 -5.557 -1.594 O30  52E 8  
52E O31 O2  O  0 1 N N N 14.086 16.030 -20.749 -2.550 -2.793 -0.883 O31  52E 9  
52E N2  N3  N  0 1 N N N 13.102 19.098 -23.188 -1.251 -1.097 0.635  N2   52E 10 
52E N4  N4  N  0 1 Y N N 9.832  24.907 -23.475 5.405  0.084  1.028  N4   52E 11 
52E C7  C6  C  0 1 Y N N 8.141  22.355 -26.473 -5.920 4.214  -0.425 C7   52E 12 
52E C8  C7  C  0 1 Y N N 9.415  22.383 -25.886 -5.125 4.398  0.691  C8   52E 13 
52E C9  C8  C  0 1 Y N N 10.072 21.198 -25.566 -4.579 3.305  1.339  C9   52E 14 
52E C10 C9  C  0 1 Y N N 9.438  19.971 -25.787 -4.827 2.028  0.872  C10  52E 15 
52E C11 C10 C  0 1 N N N 10.104 18.658 -25.464 -4.231 0.838  1.580  C11  52E 16 
52E C12 C11 C  0 1 N N N 11.758 19.011 -23.680 -2.341 -0.675 1.306  C12  52E 17 
52E C13 C12 C  0 1 N N N 14.174 18.930 -24.040 -0.829 -0.405 -0.586 C13  52E 18 
52E C14 C13 C  0 1 N N S 13.286 19.470 -21.770 -0.489 -2.247 1.126  C14  52E 19 
52E C18 C14 C  0 1 N N N 13.280 20.982 -21.610 0.905  -1.788 1.557  C18  52E 20 
52E C19 C15 C  0 1 N N N 11.696 22.595 -22.533 2.905  -0.901 0.603  C19  52E 21 
52E C20 C16 C  0 1 Y N N 11.188 25.028 -23.417 4.910  0.083  -0.207 C20  52E 22 
52E C21 C17 C  0 1 Y N N 11.855 26.235 -23.781 5.614  0.615  -1.267 C21  52E 23 
52E C22 C18 C  0 1 Y N N 11.087 27.385 -24.228 6.881  1.169  -1.021 C22  52E 24 
52E C23 C19 C  0 1 Y N N 9.689  27.247 -24.262 7.376  1.153  0.310  C23  52E 25 
52E C24 C20 C  0 1 Y N N 9.053  25.988 -23.886 6.582  0.587  1.320  C24  52E 26 
52E C25 C21 C  0 1 Y N N 11.741 28.569 -24.640 7.662  1.730  -2.042 C25  52E 27 
52E C26 C22 C  0 1 Y N N 10.972 29.668 -25.079 8.884  2.251  -1.743 C26  52E 28 
52E C27 C23 C  0 1 Y N N 9.538  29.553 -25.113 9.371  2.236  -0.437 C27  52E 29 
52E C28 C24 C  0 1 Y N N 8.897  28.374 -24.736 8.641  1.700  0.580  C28  52E 30 
52E O29 O3  O  0 1 N N N 10.801 19.216 -22.968 -2.692 -1.249 2.319  O29  52E 31 
52E O32 O4  O  0 1 N N N 12.709 21.663 -22.681 1.649  -1.340 0.394  O32  52E 32 
52E O33 O5  O  0 1 N N N 10.527 22.260 -22.398 3.366  -0.892 1.727  O33  52E 33 
52E CL1 CL1 CL 0 0 N N N 7.347  18.429 -26.645 -5.940 0.237  -0.826 CL34 52E 34 
52E F35 F1  F  0 1 N N N 6.286  21.042 -27.245 -6.947 2.756  -1.984 F35  52E 35 
52E H1  H1  H  0 1 N N N 12.245 18.533 -25.714 -2.763 0.841  0.046  H1   52E 36 
52E H2  H2  H  0 1 N N N 13.072 24.190 -22.898 3.309  -0.546 -1.340 H2   52E 37 
52E H3  H3  H  0 1 N N N 14.978 18.200 -21.502 0.280  -4.103 0.347  H3   52E 38 
52E H4  H4  H  0 1 N N N 14.326 18.922 -19.991 0.076  -2.822 -0.872 H4   52E 39 
52E H5  H5  H  0 1 N N N 12.498 17.079 -21.379 -2.219 -4.224 0.569  H5   52E 40 
52E H6  H6  H  0 1 N N N 13.350 16.709 -18.565 -1.215 -4.562 -2.293 H6   52E 41 
52E H7  H7  H  0 1 N N N 12.565 18.265 -18.999 -0.921 -5.722 -0.975 H7   52E 42 
52E H8  H8  H  0 1 N N N 11.136 16.736 -18.176 -2.872 -6.281 -2.235 H8   52E 43 
52E H9  H9  H  0 1 N N N 13.561 15.264 -20.548 -2.189 -2.401 -1.691 H9   52E 44 
52E H10 H10 H  0 1 N N N 7.648  23.275 -26.750 -6.346 5.068  -0.931 H10  52E 45 
52E H11 H11 H  0 1 N N N 9.890  23.331 -25.681 -4.930 5.395  1.057  H11  52E 46 
52E H12 H12 H  0 1 N N N 11.068 21.226 -25.149 -3.958 3.450  2.210  H12  52E 47 
52E H13 H13 H  0 1 N N N 9.540  18.194 -24.641 -4.965 0.033  1.617  H13  52E 48 
52E H14 H14 H  0 1 N N N 10.035 18.023 -26.359 -3.951 1.122  2.594  H14  52E 49 
52E H15 H15 H  0 1 N N N 15.112 19.033 -23.475 -1.248 -0.913 -1.454 H15  52E 50 
52E H16 H16 H  0 1 N N N 14.128 17.929 -24.494 -1.183 0.625  -0.560 H16  52E 51 
52E H17 H17 H  0 1 N N N 14.137 19.694 -24.831 0.259  -0.414 -0.650 H17  52E 52 
52E H18 H18 H  0 1 N N N 12.273 19.255 -21.399 -1.006 -2.689 1.978  H18  52E 53 
52E H19 H19 H  0 1 N N N 14.320 21.322 -21.499 0.814  -0.967 2.269  H19  52E 54 
52E H20 H20 H  0 1 N N N 12.714 21.231 -20.700 1.432  -2.619 2.027  H20  52E 55 
52E H21 H21 H  0 1 N N N 12.932 26.294 -23.724 5.200  0.607  -2.264 H21  52E 56 
52E H22 H22 H  0 1 N N N 7.978  25.894 -23.926 6.940  0.565  2.339  H22  52E 57 
52E H23 H23 H  0 1 N N N 12.819 28.632 -24.619 7.297  1.748  -3.059 H23  52E 58 
52E H24 H24 H  0 1 N N N 11.454 30.584 -25.386 9.485  2.683  -2.530 H24  52E 59 
52E H25 H25 H  0 1 N N N 8.947  30.397 -25.437 10.344 2.656  -0.228 H25  52E 60 
52E H26 H26 H  0 1 N N N 7.821  28.297 -24.795 9.032  1.695  1.586  H26  52E 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
52E F35 C5  SING N N 1  
52E C5  C7  DOUB Y N 2  
52E C5  C6  SING Y N 3  
52E CL1 C6  SING N N 4  
52E C7  C8  SING Y N 5  
52E C6  C10 DOUB Y N 6  
52E C8  C9  DOUB Y N 7  
52E C10 C9  SING Y N 8  
52E C10 C11 SING N N 9  
52E C11 N1  SING N N 10 
52E C27 C26 DOUB Y N 11 
52E C27 C28 SING Y N 12 
52E C26 C25 SING Y N 13 
52E N1  C12 SING N N 14 
52E C28 C23 DOUB Y N 15 
52E C25 C22 DOUB Y N 16 
52E C23 C22 SING Y N 17 
52E C23 C24 SING Y N 18 
52E C22 C21 SING Y N 19 
52E C13 N2  SING N N 20 
52E C24 N4  DOUB Y N 21 
52E C21 C20 DOUB Y N 22 
52E C12 N2  SING N N 23 
52E C12 O29 DOUB N N 24 
52E N4  C20 SING Y N 25 
52E C20 N3  SING N N 26 
52E N2  C14 SING N N 27 
52E N3  C19 SING N N 28 
52E O32 C19 SING N N 29 
52E O32 C18 SING N N 30 
52E C19 O33 DOUB N N 31 
52E C14 C18 SING N N 32 
52E C14 C15 SING N N 33 
52E C15 C16 SING N N 34 
52E O31 C16 SING N N 35 
52E C16 C17 SING N N 36 
52E C17 O30 SING N N 37 
52E N1  H1  SING N N 38 
52E N3  H2  SING N N 39 
52E C15 H3  SING N N 40 
52E C15 H4  SING N N 41 
52E C16 H5  SING N N 42 
52E C17 H6  SING N N 43 
52E C17 H7  SING N N 44 
52E O30 H8  SING N N 45 
52E O31 H9  SING N N 46 
52E C7  H10 SING N N 47 
52E C8  H11 SING N N 48 
52E C9  H12 SING N N 49 
52E C11 H13 SING N N 50 
52E C11 H14 SING N N 51 
52E C13 H15 SING N N 52 
52E C13 H16 SING N N 53 
52E C13 H17 SING N N 54 
52E C14 H18 SING N N 55 
52E C18 H19 SING N N 56 
52E C18 H20 SING N N 57 
52E C21 H21 SING N N 58 
52E C24 H22 SING N N 59 
52E C25 H23 SING N N 60 
52E C26 H24 SING N N 61 
52E C27 H25 SING N N 62 
52E C28 H26 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
52E SMILES           ACDLabs              12.01 "N(C(N(C(CC(CO)O)COC(Nc1ncc2c(c1)cccc2)=O)C)=O)Cc3c(c(ccc3)F)Cl"                                                                                                                                            
52E InChI            InChI                1.03  "InChI=1S/C24H26ClFN4O5/c1-30(23(33)28-12-17-7-4-8-20(26)22(17)25)18(10-19(32)13-31)14-35-24(34)29-21-9-15-5-2-3-6-16(15)11-27-21/h2-9,11,18-19,31-32H,10,12-14H2,1H3,(H,28,33)(H,27,29,34)/t18-,19+/m0/s1" 
52E InChIKey         InChI                1.03  HLEXQOJKMXKUKE-RBUKOAKNSA-N                                                                                                                                                                                 
52E SMILES_CANONICAL CACTVS               3.385 "CN([C@H](COC(=O)Nc1cc2ccccc2cn1)C[C@@H](O)CO)C(=O)NCc3cccc(F)c3Cl"                                                                                                                                         
52E SMILES           CACTVS               3.385 "CN([CH](COC(=O)Nc1cc2ccccc2cn1)C[CH](O)CO)C(=O)NCc3cccc(F)c3Cl"                                                                                                                                            
52E SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN([C@@H](C[C@H](CO)O)COC(=O)Nc1cc2ccccc2cn1)C(=O)NCc3cccc(c3Cl)F"                                                                                                                                         
52E SMILES           "OpenEye OEToolkits" 1.9.2 "CN(C(CC(CO)O)COC(=O)Nc1cc2ccccc2cn1)C(=O)NCc3cccc(c3Cl)F"                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
52E "SYSTEMATIC NAME" ACDLabs              12.01 "4-{[(2-chloro-3-fluorobenzyl)carbamoyl](methyl)amino}-3,4-dideoxy-5-O-(isoquinolin-3-ylcarbamoyl)-D-erythro-pentitol"           
52E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2S,4R)-2-[(2-chloranyl-3-fluoranyl-phenyl)methylcarbamoyl-methyl-amino]-4,5-bis(oxidanyl)pentyl] N-isoquinolin-3-ylcarbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
52E "Create component" 2015-07-15 RCSB 
52E "Initial release"  2016-11-16 RCSB 
# 
