data_42E
#

_chem_comp.id                                   42E
_chem_comp.name                                 "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H12 N3 O6 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        3TC-MP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-01-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       309.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    42E
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4S07
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
42E  PA     PA     P  0  1  N  N  N   9.008  -21.479  13.463   3.118  -0.976  -0.094  PA     42E   1  
42E  O1A    O1A    O  0  1  N  N  N  10.331  -21.863  12.835   3.671  -1.284   1.244  O1A    42E   2  
42E  O2A    O2A    O  0  1  N  N  N   7.776  -22.293  13.123   2.497  -2.314  -0.739  O2A    42E   3  
42E  "O5'"  "O5'"  O  0  1  N  N  N   9.226  -21.451  15.076   1.964   0.138   0.046  "O5'"  42E   4  
42E  "C5'"  "C5'"  C  0  1  N  N  N  10.468  -20.989  15.586   2.174   1.401   0.679  "C5'"  42E   5  
42E  "C4'"  "C4'"  C  0  1  N  N  R  10.397  -19.869  16.621   0.879   2.214   0.639  "C4'"  42E   6  
42E  "O4'"  "O4'"  O  0  1  N  N  N   9.373  -20.123  17.614  -0.180   1.521   1.325  "O4'"  42E   7  
42E  "S3'"  "S3'"  S  0  1  N  N  N  10.140  -18.295  15.809   0.234   2.331  -1.082  "S3'"  42E   8  
42E  "C2'"  "C2'"  C  0  1  N  N  N   9.473  -17.693  17.340  -1.520   2.470  -0.533  "C2'"  42E   9  
42E  "C1'"  "C1'"  C  0  1  N  N  S   8.821  -18.868  18.056  -1.479   1.634   0.769  "C1'"  42E  10  
42E  N1     N1     N  0  1  N  N  N   7.404  -18.810  17.694  -1.985   0.290   0.480  N1     42E  11  
42E  C2     C2     C  0  1  N  N  N   6.621  -17.837  18.205  -3.197   0.138  -0.085  C2     42E  12  
42E  O2     O2     O  0  1  N  N  N   7.155  -16.925  19.041  -3.863   1.125  -0.350  O2     42E  13  
42E  N3     N3     N  0  1  N  N  N   5.305  -17.719  17.886  -3.681  -1.072  -0.358  N3     42E  14  
42E  C4     C4     C  0  1  N  N  N   4.751  -18.640  17.070  -2.978  -2.162  -0.080  C4     42E  15  
42E  N4     N4     N  0  1  N  N  N   3.468  -18.549  16.764  -3.488  -3.407  -0.367  N4     42E  16  
42E  C5     C5     C  0  1  N  N  N   5.467  -19.669  16.505  -1.704  -2.037   0.513  C5     42E  17  
42E  C6     C6     C  0  1  N  N  N   6.890  -19.830  16.764  -1.224  -0.799   0.779  C6     42E  18  
42E  H2     H2     H  0  1  N  N  N   8.011  -22.987  12.518   3.137  -3.030  -0.853  H2     42E  19  
42E  H3     H3     H  0  1  N  N  N  10.979  -21.845  16.052   2.472   1.242   1.716  H3     42E  20  
42E  H4     H4     H  0  1  N  N  N  11.065  -20.624  14.737   2.961   1.944   0.155  H4     42E  21  
42E  H5     H5     H  0  1  N  N  N  11.376  -19.791  17.116   1.033   3.205   1.066  H5     42E  22  
42E  H6     H6     H  0  1  N  N  N  10.279  -17.276  17.962  -1.787   3.507  -0.327  H6     42E  23  
42E  H7     H7     H  0  1  N  N  N   8.723  -16.913  17.141  -2.198   2.029  -1.263  H7     42E  24  
42E  H8     H8     H  0  1  N  N  N   8.944  -18.750  19.143  -2.135   2.100   1.504  H8     42E  25  
42E  H9     H9     H  0  1  N  N  N   2.917  -17.802  17.136  -4.364  -3.489  -0.775  H9     42E  26  
42E  H10    H10    H  0  1  N  N  N   3.049  -19.227  16.160  -2.971  -4.201  -0.162  H10    42E  27  
42E  H11    H11    H  0  1  N  N  N   4.964  -20.371  15.857  -1.118  -2.914   0.742  H11    42E  28  
42E  H12    H12    H  0  1  N  N  N   7.498  -20.607  16.325  -0.251  -0.678   1.232  H12    42E  29  
42E  OP3    OP3    O  0  1  N  Y  N       ?        ?       ?   4.292  -0.417  -1.044  OP3    42E  30  
42E  H1     H1     H  0  1  N  Y  N       ?        ?       ?   4.001  -0.194  -1.938  H1     42E  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
42E  O1A    PA     DOUB  N  N   1  
42E  O2A    PA     SING  N  N   2  
42E  PA     "O5'"  SING  N  N   3  
42E  "O5'"  "C5'"  SING  N  N   4  
42E  "C5'"  "C4'"  SING  N  N   5  
42E  "S3'"  "C4'"  SING  N  N   6  
42E  "S3'"  "C2'"  SING  N  N   7  
42E  C5     C6     DOUB  N  N   8  
42E  C5     C4     SING  N  N   9  
42E  "C4'"  "O4'"  SING  N  N  10  
42E  C6     N1     SING  N  N  11  
42E  N4     C4     SING  N  N  12  
42E  C4     N3     DOUB  N  N  13  
42E  "C2'"  "C1'"  SING  N  N  14  
42E  "O4'"  "C1'"  SING  N  N  15  
42E  N1     "C1'"  SING  N  N  16  
42E  N1     C2     SING  N  N  17  
42E  N3     C2     SING  N  N  18  
42E  C2     O2     DOUB  N  N  19  
42E  O2A    H2     SING  N  N  20  
42E  "C5'"  H3     SING  N  N  21  
42E  "C5'"  H4     SING  N  N  22  
42E  "C4'"  H5     SING  N  N  23  
42E  "C2'"  H6     SING  N  N  24  
42E  "C2'"  H7     SING  N  N  25  
42E  "C1'"  H8     SING  N  N  26  
42E  N4     H9     SING  N  N  27  
42E  N4     H10    SING  N  N  28  
42E  C5     H11    SING  N  N  29  
42E  C6     H12    SING  N  N  30  
42E  PA     OP3    SING  N  N  31  
42E  OP3    H1     SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
42E  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CS2"  
42E  InChI             InChI                 1.03   "InChI=1S/C8H12N3O6PS/c9-5-1-2-11(8(12)10-5)6-4-19-7(17-6)3-16-18(13,14)15/h1-2,6-7H,3-4H2,(H2,9,10,12)(H2,13,14,15)/t6-,7+/m0/s1"  
42E  InChIKey          InChI                 1.03   WUMZLKDCOINBEA-NKWVEPMBSA-N  
42E  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(O)=O)O2"  
42E  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(O)=O)O2"  
42E  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H](O[C@H](S1)COP(=O)(O)O)N2C=CC(=NC2=O)N"  
42E  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(OC(S1)COP(=O)(O)O)N2C=CC(=NC2=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
42E  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate"  
42E  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
42E  "Create component"  2015-01-29  RCSB  
42E  "Initial release"   2017-01-11  RCSB  
42E  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     42E
_pdbx_chem_comp_synonyms.name        3TC-MP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
