data_12E
#

_chem_comp.id                                   12E
_chem_comp.name                                 "N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-beta-D-glucopyranosylamine"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H18 N4 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;4-pyridinecarboxaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone;
N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-beta-D-glucosylamine;
N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-D-glucosylamine;
N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-glucosylamine
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-04-30
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       342.371
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    12E
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3MRT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  12E  "4-pyridinecarboxaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone"               PDB  ?  
2  12E  "N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-beta-D-glucosylamine"  PDB  ?  
3  12E  "N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-D-glucosylamine"       PDB  ?  
4  12E  "N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazino]carbonothioyl}-glucosylamine"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
12E  C1   C1   C  0  1  N  N  R  19.237  14.853  55.609  -1.628  -0.187   0.469  C1   12E   1  
12E  N1   N1   N  0  1  N  N  N  18.818  13.558  55.036  -0.189  -0.456   0.415  N1   12E   2  
12E  S1   S1   S  0  1  N  N  N  18.159  12.663  57.520  -0.800  -2.899   1.258  S1   12E   3  
12E  C2   C2   C  0  1  N  N  R  20.639  15.343  55.185  -1.861   1.264   0.899  C2   12E   4  
12E  N2   N2   N  0  1  N  N  N  17.956  11.426  55.141   1.607  -1.918   0.710  N2   12E   5  
12E  O2   O2   O  0  1  N  N  N  21.658  14.535  55.792  -1.340   1.461   2.215  O2   12E   6  
12E  C3   C3   C  0  1  N  N  S  20.842  16.822  55.568  -3.365   1.555   0.895  C3   12E   7  
12E  N3   N3   N  0  1  N  N  N  18.065  11.339  53.912   2.493  -0.912   0.301  N3   12E   8  
12E  O3   O3   O  0  1  N  N  N  22.078  17.306  55.029  -3.587   2.927   1.226  O3   12E   9  
12E  C4   C4   C  0  1  N  N  S  19.677  17.686  55.062  -3.925   1.265  -0.501  C4   12E  10  
12E  N4   N4   N  0  1  Y  N  N  17.950   9.927  49.122   6.430   1.872  -0.975  N4   12E  11  
12E  O4   O4   O  0  1  N  N  N  19.816  19.023  55.539  -5.341   1.463  -0.498  O4   12E  12  
12E  C5   C5   C  0  1  N  N  R  18.342  17.105  55.540  -3.613  -0.186  -0.877  C5   12E  13  
12E  O5   O5   O  0  1  N  N  N  18.224  15.742  55.072  -2.201  -0.397  -0.823  O5   12E  14  
12E  C6   C6   C  0  1  N  N  N  17.141  17.874  55.000  -4.117  -0.465  -2.294  C6   12E  15  
12E  O6   O6   O  0  1  N  N  N  15.951  17.144  55.312  -3.931  -1.848  -2.602  O6   12E  16  
12E  C7   C7   C  0  1  N  N  N  18.324  12.548  55.763   0.283  -1.670   0.759  C7   12E  17  
12E  C8   C8   C  0  1  N  N  N  17.713  10.242  53.262   3.768  -1.150   0.254  C8   12E  18  
12E  C9   C9   C  0  1  Y  N  N  17.817  10.147  51.869   4.700  -0.092  -0.176  C9   12E  19  
12E  C10  C10  C  0  1  Y  N  N  18.452  11.128  51.105   6.080  -0.328  -0.234  C10  12E  20  
12E  C11  C11  C  0  1  Y  N  N  18.506  10.980  49.716   6.915   0.691  -0.642  C11  12E  21  
12E  C12  C12  C  0  1  Y  N  N  17.334   8.972  49.815   5.138   2.137  -0.934  C12  12E  22  
12E  C13  C13  C  0  1  Y  N  N  17.240   9.062  51.206   4.231   1.178  -0.538  C13  12E  23  
12E  H1   H1   H  0  1  N  N  N  19.316  14.797  56.705  -2.097  -0.859   1.188  H1   12E  24  
12E  HN1  HN1  H  0  1  N  N  N  18.908  13.428  54.049   0.424   0.241   0.133  HN1  12E  25  
12E  H2   H2   H  0  1  N  N  N  20.715  15.251  54.091  -1.358   1.935   0.203  H2   12E  26  
12E  HN2  HN2  H  0  1  N  N  N  17.593  10.657  55.667   1.946  -2.792   0.957  HN2  12E  27  
12E  HO2  HO2  H  0  1  N  Y  N  22.513  14.848  55.522  -0.391   1.290   2.293  HO2  12E  28  
12E  H3   H3   H  0  1  N  N  N  20.873  16.890  56.665  -3.861   0.918   1.627  H3   12E  29  
12E  HO3  HO3  H  0  1  N  Y  N  22.194  18.218  55.270  -3.251   3.181   2.096  HO3  12E  30  
12E  H4   H4   H  0  1  N  N  N  19.694  17.691  53.962  -3.465   1.937  -1.225  H4   12E  31  
12E  HO4  HO4  H  0  1  N  Y  N  19.092  19.550  55.222  -5.611   2.362  -0.262  HO4  12E  32  
12E  H5   H5   H  0  1  N  N  N  18.340  17.171  56.638  -4.108  -0.858  -0.176  H5   12E  33  
12E  H61  H6   H  0  1  N  N  N  17.098  18.870  55.465  -5.177  -0.219  -2.358  H61  12E  34  
12E  H62  H6A  H  0  1  N  N  N  17.232  17.987  53.910  -3.559   0.143  -3.005  H62  12E  35  
12E  HO6  HO6  H  0  1  N  Y  N  15.195  17.614  54.980  -4.230  -2.098  -3.487  HO6  12E  36  
12E  H8   H8   H  0  1  N  N  N  17.336   9.398  53.820   4.146  -2.124   0.529  H8   12E  37  
12E  H10  H10  H  0  1  N  N  N  18.896  11.990  51.581   6.483  -1.292   0.037  H10  12E  38  
12E  H11  H11  H  0  1  N  N  N  19.005  11.729  49.118   7.980   0.519  -0.691  H11  12E  39  
12E  H12  H12  H  0  1  N  N  N  16.905   8.125  49.300   4.787   3.119  -1.215  H12  12E  40  
12E  H13  H13  H  0  1  N  N  N  16.724   8.296  51.766   3.175   1.402  -0.507  H13  12E  41  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
12E  N1   C1   SING  N  N   1  
12E  O5   C1   SING  N  N   2  
12E  C2   C1   SING  N  N   3  
12E  C1   H1   SING  N  N   4  
12E  N1   C7   SING  N  N   5  
12E  N1   HN1  SING  N  N   6  
12E  C7   S1   DOUB  N  N   7  
12E  C2   C3   SING  N  N   8  
12E  C2   O2   SING  N  N   9  
12E  C2   H2   SING  N  N  10  
12E  N3   N2   SING  N  N  11  
12E  N2   C7   SING  N  N  12  
12E  N2   HN2  SING  N  N  13  
12E  O2   HO2  SING  N  N  14  
12E  O3   C3   SING  N  N  15  
12E  C4   C3   SING  N  N  16  
12E  C3   H3   SING  N  N  17  
12E  C8   N3   DOUB  N  N  18  
12E  O3   HO3  SING  N  N  19  
12E  C4   O4   SING  N  N  20  
12E  C4   C5   SING  N  N  21  
12E  C4   H4   SING  N  N  22  
12E  N4   C11  DOUB  Y  N  23  
12E  N4   C12  SING  Y  N  24  
12E  O4   HO4  SING  N  N  25  
12E  C6   C5   SING  N  N  26  
12E  O5   C5   SING  N  N  27  
12E  C5   H5   SING  N  N  28  
12E  C6   O6   SING  N  N  29  
12E  C6   H61  SING  N  N  30  
12E  C6   H62  SING  N  N  31  
12E  O6   HO6  SING  N  E  32  
12E  C9   C8   SING  N  N  33  
12E  C8   H8   SING  N  N  34  
12E  C10  C9   DOUB  Y  N  35  
12E  C13  C9   SING  Y  N  36  
12E  C11  C10  SING  Y  N  37  
12E  C10  H10  SING  N  N  38  
12E  C11  H11  SING  N  N  39  
12E  C12  C13  DOUB  Y  N  40  
12E  C12  H12  SING  N  N  41  
12E  C13  H13  SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
12E  SMILES            ACDLabs               12.01  "S=C(NC1OC(C(O)C(O)C1O)CO)N/N=C/c2ccncc2"  
12E  SMILES_CANONICAL  CACTVS                3.370  "OC[C@H]1O[C@@H](NC(=S)N/N=C/c2ccncc2)[C@H](O)[C@@H](O)[C@@H]1O"  
12E  SMILES            CACTVS                3.370  "OC[CH]1O[CH](NC(=S)NN=Cc2ccncc2)[CH](O)[CH](O)[CH]1O"  
12E  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1cnccc1/C=N/NC(=S)N[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"  
12E  SMILES            "OpenEye OEToolkits"  1.7.0  "c1cnccc1C=NNC(=S)NC2C(C(C(C(O2)CO)O)O)O"  
12E  InChI             InChI                 1.03   "InChI=1S/C13H18N4O5S/c18-6-8-9(19)10(20)11(21)12(22-8)16-13(23)17-15-5-7-1-3-14-4-2-7/h1-5,8-12,18-21H,6H2,(H2,16,17,23)/b15-5+/t8-,9-,10+,11-,12-/m1/s1"  
12E  InChIKey          InChI                 1.03   KHZWKRXKMLEULJ-XYUJZHSNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
12E  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{[(2E)-2-(pyridin-4-ylmethylidene)hydrazinyl]carbothioyl}-beta-D-glucopyranosylamine"  
12E  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "1-[(E)-pyridin-4-ylmethylideneamino]-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]thiourea"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
12E  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
12E  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
12E  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
12E  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
12E  "Create component"          2010-04-30  RCSB  
12E  "Modify aromatic_flag"      2011-06-04  RCSB  
12E  "Modify descriptor"         2011-06-04  RCSB  
12E  "Other modification"        2020-07-03  RCSB  
12E  "Modify synonyms"           2020-07-17  RCSB  
12E  "Modify internal type"      2020-07-17  RCSB  
12E  "Modify linking type"       2020-07-17  RCSB  
12E  "Modify atom id"            2020-07-17  RCSB  
12E  "Modify component atom id"  2020-07-17  RCSB  
12E  "Modify leaving atom flag"  2020-07-17  RCSB  
##
