data_0GE
# 
_chem_comp.id                                    0GE 
_chem_comp.name                                  "N-{[5-(dimethylamino)naphthalen-1-yl]sulfonyl}-L-alpha-glutamyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]glycinamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H38 Cl N7 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1,5-DANSYL-GLU-GLY-ARG-CHLOROMETHYL KETONE, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-09-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        628.141 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0GE 
_chem_comp.pdbx_model_coordinates_details        "not provided" 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CVW 
_chem_comp.pdbx_subcomponent_list                "ANS GLU GLY AR7 0QE" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0GE C11  C11  C  0 1 Y N N N N N 1.351  37.124 29.975 -4.562 -0.269 -0.184 C1   ANS 1  
0GE C21  C21  C  0 1 Y N N N N N 0.363  37.170 29.004 -4.702 -0.615 -1.492 C2   ANS 2  
0GE C3   C3   C  0 1 Y N N N N N -0.759 37.996 29.200 -4.541 -1.936 -1.906 C3   ANS 3  
0GE C4   C4   C  0 1 Y N N N N N -0.843 38.805 30.339 -4.240 -2.918 -1.012 C4   ANS 4  
0GE C4A  C4A  C  0 1 Y N N N N N 0.144  38.716 31.355 -4.089 -2.598 0.346  C4A  ANS 5  
0GE C5   C5   C  0 1 Y N N N N N 0.072  39.522 32.552 -3.778 -3.590 1.302  C5   ANS 6  
0GE C6   C6   C  0 1 Y N N N N N 1.010  39.319 33.592 -3.638 -3.233 2.626  C6   ANS 7  
0GE C7   C7   C  0 1 Y N N N N N 2.054  38.399 33.440 -3.801 -1.911 3.028  C7   ANS 8  
0GE C8   C8   C  0 1 Y N N N N N 2.203  37.694 32.243 -4.101 -0.934 2.128  C8   ANS 9  
0GE C8A  C8A  C  0 1 Y N N N N N 1.263  37.834 31.202 -4.252 -1.256 0.768  C8A  ANS 10 
0GE N3   N3   N  0 1 N N N N N N -0.972 40.549 32.642 -3.614 -4.917 0.910  N    ANS 11 
0GE CM1  CM1  C  0 1 N N N N N N -1.943 40.164 33.720 -2.266 -5.399 1.237  CM1  ANS 12 
0GE CM2  CM2  C  0 1 N N N N N N -0.349 41.866 33.014 -4.641 -5.775 1.515  CM2  ANS 13 
0GE S    S    S  0 1 N N N N N N 2.503  35.871 29.497 -4.763 1.410  0.315  S    ANS 14 
0GE O1S  O1S  O  0 1 N N N N N N 2.655  34.960 30.595 -5.009 2.154  -0.870 O1S  ANS 15 
0GE O2S  O2S  O  0 1 N N N N N N 2.193  35.361 28.185 -5.653 1.395  1.423  O2S  ANS 16 
0GE N    N    N  0 1 N N N N N N 3.546  36.747 29.628 -3.301 1.927  0.896  N    GLU 17 
0GE CA   CA   C  0 1 N N S N N N 4.027  37.561 28.503 -2.149 2.025  -0.003 CA   GLU 18 
0GE C    C    C  0 1 N N N N N N 4.890  36.708 27.560 -1.064 1.091  0.467  C    GLU 19 
0GE O    O    O  0 1 N N N N N N 5.829  36.017 27.983 -1.236 0.410  1.456  O    GLU 20 
0GE CB   CB   C  0 1 N N N N N N 4.857  38.734 29.023 -1.621 3.461  -0.001 CB   GLU 21 
0GE CG   CG   C  0 1 N N N N N N 4.401  40.078 28.454 -2.699 4.401  -0.544 CG   GLU 22 
0GE CD   CD   C  0 1 N N N N N N 5.468  41.162 28.571 -2.196 5.821  -0.502 CD   GLU 23 
0GE OE1  OE1  O  0 1 N N N N N N 5.823  41.591 29.733 -1.088 6.056  -0.081 OE1  GLU 24 
0GE OE2  OE2  O  0 1 N N N N N N 6.014  41.645 27.507 -2.978 6.823  -0.932 OE2  GLU 25 
0GE N1   N1   N  0 1 N N N N N N 4.541  36.787 26.289 0.098  1.012  -0.211 N    GLY 26 
0GE CA1  CA1  C  0 1 N N N N N N 5.230  36.047 25.221 1.153  0.104  0.246  CA   GLY 27 
0GE C1   C1   C  0 1 N N N N N N 6.664  36.553 25.069 2.339  0.205  -0.679 C    GLY 28 
0GE O1   O1   O  0 1 N N N N N N 6.941  37.748 25.250 2.306  0.961  -1.627 O    GLY 29 
0GE N2   N2   N  0 1 N N N N N N 7.540  35.661 24.707 3.435  -0.545 -0.453 N    AR7 30 
0GE CA2  CA2  C  0 1 N N S N N N 8.954  36.012 24.643 4.588  -0.447 -1.352 CA   AR7 31 
0GE C2   C2   C  0 1 N N S N N N 9.573  35.912 23.228 4.380  -1.375 -2.551 C    AR7 32 
0GE O2   O2   O  0 1 N N N N N N 10.687 36.411 22.983 5.504  -1.279 -3.428 O    AR7 33 
0GE CB1  CB1  C  0 1 N N N N N N 9.773  35.018 25.485 5.856  -0.859 -0.603 CB   AR7 34 
0GE CG1  CG1  C  0 1 N N N N N N 9.464  35.112 26.971 6.133  0.142  0.521  CG   AR7 35 
0GE CD1  CD1  C  0 1 N N N N N N 9.904  33.903 27.783 7.401  -0.270 1.270  CD   AR7 36 
0GE NE   NE   N  0 1 N N N N N N 9.624  34.123 29.208 7.666  0.689  2.346  NE   AR7 37 
0GE CZ   CZ   C  0 1 N N N N N N 10.048 33.328 30.191 8.761  0.523  3.160  CZ   AR7 38 
0GE NH1  NH1  N  0 1 N N N N N N 10.774 32.251 29.908 9.564  -0.487 2.976  NH1  AR7 39 
0GE NH2  NH2  N  0 1 N N N N N N 9.753  33.611 31.462 9.009  1.423  4.170  NH2  AR7 40 
0GE CM   CM   C  0 1 N N N N N N 8.746  35.650 22.001 3.112  -0.963 -3.301 C1   0QE 41 
0GE CL   CL   CL 0 0 N Y N N N N 7.368  35.918 21.842 2.786  -2.143 -4.625 CL1  0QE 42 
0GE H21  H21  H  0 1 N N N N N N 0.454  36.577 28.106 -4.941 0.146  -2.221 H2   ANS 43 
0GE H3   H3   H  0 1 N N N N N N -1.556 38.006 28.471 -4.657 -2.184 -2.950 H3   ANS 44 
0GE H4   H4   H  0 1 N N N N N N -1.663 39.500 30.445 -4.119 -3.938 -1.347 H4   ANS 45 
0GE H6   H6   H  0 1 N N N N N N 0.920  39.879 34.511 -3.400 -3.989 3.360  H6   ANS 46 
0GE H7   H7   H  0 1 N N N N N N 2.747  38.233 34.251 -3.687 -1.655 4.071  H7   ANS 47 
0GE H8   H8   H  0 1 N N N N N N 3.048  37.034 32.114 -4.224 0.086  2.458  H8   ANS 48 
0GE HM11 HM11 H  0 0 N N N N N N -2.730 40.929 33.795 -2.106 -5.330 2.313  HM11 ANS 49 
0GE HM12 HM12 H  0 0 N N N N N N -2.397 39.193 33.474 -2.165 -6.438 0.921  HM12 ANS 50 
0GE HM13 HM13 H  0 0 N N N N N N -1.413 40.088 34.681 -1.526 -4.788 0.720  HM13 ANS 51 
0GE HM21 HM21 H  0 0 N N N N N N -1.131 42.636 33.082 -5.629 -5.437 1.199  HM21 ANS 52 
0GE HM22 HM22 H  0 0 N N N N N N 0.156  41.771 33.986 -4.490 -6.805 1.192  HM22 ANS 53 
0GE HM23 HM23 H  0 0 N N N N N N 0.384  42.155 32.246 -4.568 -5.719 2.601  HM23 ANS 54 
0GE H    H    H  0 1 N N N N N N 4.328  36.191 29.908 -3.208 2.164  1.832  H    GLU 55 
0GE HA   HA   H  0 1 N N N N N N 3.156  37.944 27.951 -2.452 1.750  -1.013 HA   GLU 56 
0GE HB2  HB2  H  0 1 N N N N N N 4.760  38.770 30.118 -1.365 3.752  1.018  HB2  GLU 57 
0GE HB3  HB3  H  0 1 N N N N N N 5.906  38.572 28.734 -0.734 3.523  -0.631 HB3  GLU 58 
0GE HG2  HG2  H  0 1 N N N N N N 4.162  39.941 27.389 -2.934 4.129  -1.573 HG2  GLU 59 
0GE HG3  HG3  H  0 1 N N N N N N 3.511  40.406 29.011 -3.597 4.316  0.068  HG3  GLU 60 
0GE HE2  HE2  H  0 1 N N N N N N 6.654  42.304 27.750 -2.611 7.717  -0.886 HE2  GLU 61 
0GE H1   H1   H  0 1 N N N N N N 3.773  37.377 26.041 0.236  1.556  -1.002 H    GLY 62 
0GE HA2  HA2  H  0 1 N N N N N N 5.248  34.977 25.475 1.456  0.378  1.256  HA2  GLY 63 
0GE HA3  HA3  H  0 1 N N N N N N 4.692  36.194 24.273 0.777  -0.920 0.244  HA3  GLY 64 
0GE H2   H2   H  0 1 N N N N N N 7.243  34.735 24.473 3.462  -1.150 0.305  H    AR7 65 
0GE HA1  HA1  H  0 1 N N N N N N 8.995  37.053 24.997 4.690  0.581  -1.702 HA   AR7 66 
0GE H37  H37  H  0 1 N N N N N N 9.768  34.887 23.577 4.278  -2.402 -2.202 HF   AR7 67 
0GE H38  H38  H  0 1 N N N N N N 10.910 36.257 22.073 6.345  -1.526 -3.019 H1   AR7 68 
0GE HB21 HB21 H  0 0 N N N N N N 9.537  33.999 25.145 5.720  -1.854 -0.178 HB1  AR7 69 
0GE HB31 HB31 H  0 0 N N N N N N 10.841 35.236 25.338 6.699  -0.872 -1.294 HB2  AR7 70 
0GE HG21 HG21 H  0 0 N N N N N N 9.987  35.994 27.369 6.269  1.137  0.095  HG1  AR7 71 
0GE HG31 HG31 H  0 0 N N N N N N 8.375  35.215 27.083 5.290  0.155  1.212  HG2  AR7 72 
0GE HD2  HD2  H  0 1 N N N N N N 9.354  33.015 27.438 7.265  -1.264 1.695  HD1  AR7 73 
0GE HD3  HD3  H  0 1 N N N N N N 10.984 33.747 27.645 8.244  -0.282 0.579  HD2  AR7 74 
0GE HE   HE   H  0 1 N N N N N N 9.079  34.923 29.458 7.069  1.441  2.484  HNE  AR7 75 
0GE HH1  HH1  H  0 1 N N N N N N 11.031 31.746 30.732 10.336 -0.604 3.550  HN11 AR7 76 
0GE HH21 HH21 H  0 0 N N N N N N 10.078 33.014 32.196 8.412  2.175  4.307  HN21 AR7 77 
0GE HH22 HH22 H  0 0 N N N N N N 9.207  34.420 31.680 9.782  1.306  4.745  HN22 AR7 78 
0GE HM1  HM1  H  0 1 N N N N N N 9.229  36.253 21.218 2.269  -0.950 -2.610 H    0QE 79 
0GE HM2  HM2  H  0 1 N N N N N N 8.828  34.564 21.849 3.247  0.032  -3.726 HA   0QE 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0GE C11 C21  DOUB Y N 1  
0GE C11 C8A  SING Y N 2  
0GE C11 S    SING N N 3  
0GE C21 C3   SING Y N 4  
0GE C21 H21  SING N N 5  
0GE C3  C4   DOUB Y N 6  
0GE C3  H3   SING N N 7  
0GE C4  C4A  SING Y N 8  
0GE C4  H4   SING N N 9  
0GE C4A C5   DOUB Y N 10 
0GE C4A C8A  SING Y N 11 
0GE C5  C6   SING Y N 12 
0GE C5  N3   SING N N 13 
0GE C6  C7   DOUB Y N 14 
0GE C6  H6   SING N N 15 
0GE C7  C8   SING Y N 16 
0GE C7  H7   SING N N 17 
0GE C8  C8A  DOUB Y N 18 
0GE C8  H8   SING N N 19 
0GE N3  CM1  SING N N 20 
0GE N3  CM2  SING N N 21 
0GE CM1 HM11 SING N N 22 
0GE CM1 HM12 SING N N 23 
0GE CM1 HM13 SING N N 24 
0GE CM2 HM21 SING N N 25 
0GE CM2 HM22 SING N N 26 
0GE CM2 HM23 SING N N 27 
0GE S   O1S  DOUB N N 28 
0GE S   O2S  DOUB N N 29 
0GE N   CA   SING N N 30 
0GE N   H    SING N N 31 
0GE N   S    SING N N 32 
0GE CA  C    SING N N 33 
0GE CA  CB   SING N N 34 
0GE CA  HA   SING N N 35 
0GE C   O    DOUB N N 36 
0GE C   N1   SING N N 37 
0GE CB  CG   SING N N 38 
0GE CB  HB2  SING N N 39 
0GE CB  HB3  SING N N 40 
0GE CG  CD   SING N N 41 
0GE CG  HG2  SING N N 42 
0GE CG  HG3  SING N N 43 
0GE CD  OE1  DOUB N N 44 
0GE CD  OE2  SING N N 45 
0GE OE2 HE2  SING N N 46 
0GE N1  CA1  SING N N 47 
0GE N1  H1   SING N N 48 
0GE CA1 C1   SING N N 49 
0GE CA1 HA2  SING N N 50 
0GE CA1 HA3  SING N N 51 
0GE C1  O1   DOUB N N 52 
0GE C1  N2   SING N N 53 
0GE N2  CA2  SING N N 54 
0GE N2  H2   SING N N 55 
0GE CA2 CB1  SING N N 56 
0GE CA2 C2   SING N N 57 
0GE CA2 HA1  SING N N 58 
0GE CB1 CG1  SING N N 59 
0GE CB1 HB21 SING N N 60 
0GE CB1 HB31 SING N N 61 
0GE CG1 CD1  SING N N 62 
0GE CG1 HG21 SING N N 63 
0GE CG1 HG31 SING N N 64 
0GE CD1 NE   SING N N 65 
0GE CD1 HD2  SING N N 66 
0GE CD1 HD3  SING N N 67 
0GE NE  CZ   SING N N 68 
0GE NE  HE   SING N N 69 
0GE CZ  NH1  DOUB N N 70 
0GE CZ  NH2  SING N N 71 
0GE NH1 HH1  SING N N 72 
0GE NH2 HH21 SING N N 73 
0GE NH2 HH22 SING N N 74 
0GE C2  O2   SING N N 75 
0GE C2  CM   SING N N 76 
0GE CM  HM1  SING N N 77 
0GE CM  HM2  SING N N 78 
0GE CL  CM   SING N N 79 
0GE C2  H37  SING N N 80 
0GE O2  H38  SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0GE SMILES           ACDLabs              12.01 "ClCC(O)C(NC(=O)CNC(=O)C(NS(=O)(=O)c2cccc1c(cccc12)N(C)C)CCC(=O)O)CCCNC(=[N@H])N"                                                                                                                                                                                
0GE InChI            InChI                1.03  "InChI=1S/C26H38ClN7O7S/c1-34(2)20-9-3-7-17-16(20)6-4-10-22(17)42(40,41)33-19(11-12-24(37)38)25(39)31-15-23(36)32-18(21(35)14-27)8-5-13-30-26(28)29/h3-4,6-7,9-10,18-19,21,33,35H,5,8,11-15H2,1-2H3,(H,31,39)(H,32,36)(H,37,38)(H4,28,29,30)/t18-,19-,21+/m0/s1" 
0GE InChIKey         InChI                1.03  AKFRXQNHCCSRJN-IRFCIJBXSA-N                                                                                                                                                                                                                                      
0GE SMILES_CANONICAL CACTVS               3.370 "CN(C)c1cccc2c1cccc2[S](=O)(=O)N[C@@H](CCC(O)=O)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)[C@H](O)CCl"                                                                                                                                                                      
0GE SMILES           CACTVS               3.370 "CN(C)c1cccc2c1cccc2[S](=O)(=O)N[CH](CCC(O)=O)C(=O)NCC(=O)N[CH](CCCNC(N)=N)[CH](O)CCl"                                                                                                                                                                           
0GE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(\\N)/NCCCC(C(CCl)O)NC(=O)CNC(=O)C(CCC(=O)O)NS(=O)(=O)c1cccc2c1cccc2N(C)C"                                                                                                                                                                               
0GE SMILES           "OpenEye OEToolkits" 1.7.2 "CN(C)c1cccc2c1cccc2S(=O)(=O)NC(CCC(=O)O)C(=O)NCC(=O)NC(CCCNC(=N)N)C(CCl)O"                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0GE "SYSTEMATIC NAME" ACDLabs              12.01 "N-{[5-(dimethylamino)naphthalen-1-yl]sulfonyl}-L-alpha-glutamyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]glycinamide"                                              
0GE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "5-[[2-[(6-carbamimidamido-1-chloranyl-2-oxidanyl-hexan-3-yl)amino]-2-oxidanylidene-ethyl]amino]-4-[[5-(dimethylamino)naphthalen-1-yl]sulfonylamino]-5-oxidanylidene-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0GE "Create component"     2008-09-14 RCSB 
0GE "Modify aromatic_flag" 2011-06-04 RCSB 
0GE "Modify descriptor"    2011-06-04 RCSB 
0GE "Other modification"   2011-08-06 RCSB 
0GE "Other modification"   2011-09-27 RCSB 
0GE "Modify synonyms"      2021-03-13 RCSB 
0GE "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      0GE 
_pdbx_chem_comp_synonyms.name         "1,5-DANSYL-GLU-GLY-ARG-CHLOROMETHYL KETONE, bound form" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 0GE HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CM NE2 ? ? 
2 0GE SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OG  ? ? 
# 
