data_07E
# 
_chem_comp.id                                    07E 
_chem_comp.name                                  "(3S)-3-hydroxybutyl beta-D-xylopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C9 H18 O6" 
_chem_comp.mon_nstd_parent_comp_id               XYP 
_chem_comp.pdbx_synonyms                         "(3S)-3-hydroxybutyl beta-D-xyloside; (3S)-3-hydroxybutyl D-xyloside; (3S)-3-hydroxybutyl xyloside" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-09-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        222.236 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     07E 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1REE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 07E "(3S)-3-hydroxybutyl beta-D-xyloside" PDB ? 
2 07E "(3S)-3-hydroxybutyl D-xyloside"      PDB ? 
3 07E "(3S)-3-hydroxybutyl xyloside"        PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
07E C1    C1    C 0 1 N N R N N N 81.727 22.727 10.669 0.450  0.166  -0.277 C1    07E 1  
07E C2    C2    C 0 1 N N R N N N 81.511 23.929 11.629 1.582  1.056  0.240  C2    07E 2  
07E C3    C3    C 0 1 N N S N N N 82.839 24.205 12.359 2.926  0.472  -0.207 C3    07E 3  
07E C4    C4    C 0 1 N N R N N N 83.290 22.965 13.153 3.039  -0.968 0.303  C4    07E 4  
07E C5    C5    C 0 1 N N N N N N 83.348 21.754 12.193 1.850  -1.781 -0.217 C5    07E 5  
07E O1    O1    O 0 1 N N N N N N 80.550 22.369 9.904  -0.804 0.673  0.184  O1    07E 6  
07E O2    O2    O 0 1 N N N N N N 81.157 25.111 10.936 1.434  2.374  -0.291 O2    07E 7  
07E O3    O3    O 0 1 N N N N N N 82.705 25.289 13.235 3.992  1.256  0.333  O3    07E 8  
07E O4    O4    O 0 1 N N N N N N 84.565 23.200 13.751 4.257  -1.548 -0.170 O4    07E 9  
07E O5    O5    O 0 1 N N N N N N 82.114 21.609 11.462 0.632  -1.166 0.209  O5    07E 10 
07E "C1'" "C1'" C 0 1 N N N N N N 80.806 22.016 8.510  -1.939 -0.023 -0.336 "C1'" 07E 11 
07E "C2'" "C2'" C 0 1 N N N N N N 79.665 21.226 7.835  -3.220 0.603  0.222  "C2'" 07E 12 
07E "C3'" "C3'" C 0 1 N N S N N N 78.447 21.995 7.288  -4.435 -0.142 -0.335 "C3'" 07E 13 
07E "C4'" "C4'" C 0 1 N N N N N N 78.759 22.998 6.145  -5.716 0.559  0.122  "C4'" 07E 14 
07E "O'"  "O'"  O 0 1 N N N N N N 77.874 22.690 8.366  -4.430 -1.487 0.147  "O'"  07E 15 
07E H1    H1    H 0 1 N N N N N N 82.495 23.019 9.938  0.461  0.159  -1.367 H1    07E 16 
07E H2    H2    H 0 1 N N N N N N 80.694 23.667 12.318 1.547  1.095  1.329  H2    07E 17 
07E H3    H3    H 0 1 N N N N N N 83.597 24.445 11.599 2.982  0.479  -1.296 H3    07E 18 
07E H4    H4    H 0 1 N N N N N N 82.573 22.755 13.960 3.034  -0.970 1.393  H4    07E 19 
07E H51   H5    H 0 1 N N N N N N 83.523 20.841 12.781 1.880  -1.812 -1.306 H51   07E 20 
07E H52   H6    H 0 1 N N N N N N 84.170 21.905 11.478 1.903  -2.795 0.178  H52   07E 21 
07E HO2   H7    H 0 1 N Y N N N N 81.035 25.819 11.558 0.602  2.804  -0.051 HO2   07E 22 
07E HO3   H8    H 0 1 N Y N N N N 83.532 25.445 13.676 4.873  0.942  0.089  HO3   07E 23 
07E HO4   H9    H 0 1 N Y N N N N 84.508 23.946 14.336 4.394  -2.461 0.116  HO4   07E 24 
07E H10   H10   H 0 1 N N N N N N 81.712 21.393 8.480  -1.943 0.050  -1.423 H10   07E 25 
07E H11   H11   H 0 1 N N N N N N 80.950 22.949 7.946  -1.889 -1.071 -0.041 H11   07E 26 
07E H12   H12   H 0 1 N N N N N N 79.278 20.529 8.593  -3.216 0.531  1.309  H12   07E 27 
07E H13   H13   H 0 1 N N N N N N 80.114 20.703 6.977  -3.270 1.651  -0.073 H13   07E 28 
07E H14   H14   H 0 1 N N N N N N 77.771 21.251 6.841  -4.391 -0.146 -1.424 H14   07E 29 
07E H15   H15   H 0 1 N N N N N N 77.829 23.492 5.826  -5.719 1.585  -0.245 H15   07E 30 
07E H16   H16   H 0 1 N N N N N N 79.471 23.755 6.506  -6.581 0.029  -0.274 H16   07E 31 
07E H17   H17   H 0 1 N N N N N N 79.197 22.458 5.293  -5.759 0.563  1.211  H17   07E 32 
07E H18   H18   H 0 1 N N N N N N 77.681 22.081 9.069  -4.468 -1.560 1.111  H18   07E 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
07E "C4'" "C3'" SING N N 1  
07E "C3'" "C2'" SING N N 2  
07E "C3'" "O'"  SING N N 3  
07E "C2'" "C1'" SING N N 4  
07E "C1'" O1    SING N N 5  
07E O1    C1    SING N N 6  
07E C1    O5    SING N N 7  
07E C1    C2    SING N N 8  
07E O2    C2    SING N N 9  
07E O5    C5    SING N N 10 
07E C2    C3    SING N N 11 
07E C5    C4    SING N N 12 
07E C3    C4    SING N N 13 
07E C3    O3    SING N N 14 
07E C4    O4    SING N N 15 
07E C1    H1    SING N N 16 
07E C2    H2    SING N N 17 
07E C3    H3    SING N N 18 
07E C4    H4    SING N N 19 
07E C5    H51   SING N N 20 
07E C5    H52   SING N N 21 
07E O2    HO2   SING N N 22 
07E O3    HO3   SING N N 23 
07E O4    HO4   SING N N 24 
07E "C1'" H10   SING N N 25 
07E "C1'" H11   SING N N 26 
07E "C2'" H12   SING N N 27 
07E "C2'" H13   SING N N 28 
07E "C3'" H14   SING N N 29 
07E "C4'" H15   SING N N 30 
07E "C4'" H16   SING N N 31 
07E "C4'" H17   SING N N 32 
07E "O'"  H18   SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
07E SMILES           ACDLabs              12.01 "O(CCC(O)C)C1OCC(O)C(O)C1O"                                                                      
07E InChI            InChI                1.03  "InChI=1S/C9H18O6/c1-5(10)2-3-14-9-8(13)7(12)6(11)4-15-9/h5-13H,2-4H2,1H3/t5-,6+,7-,8+,9+/m0/s1" 
07E InChIKey         InChI                1.03  KAKVKOIRYXYSBS-KVEIKIFDSA-N                                                                      
07E SMILES_CANONICAL CACTVS               3.370 "C[C@H](O)CCO[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O"                                                  
07E SMILES           CACTVS               3.370 "C[CH](O)CCO[CH]1OC[CH](O)[CH](O)[CH]1O"                                                         
07E SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@@H](CCO[C@H]1[C@@H]([C@H]([C@@H](CO1)O)O)O)O"                                               
07E SMILES           "OpenEye OEToolkits" 1.7.2 "CC(CCOC1C(C(C(CO1)O)O)O)O"                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
07E "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-hydroxybutyl beta-D-xylopyranoside"                
07E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R,3R,4S,5R)-2-[(3S)-3-oxidanylbutoxy]oxane-3,4,5-triol" 
# 
_pdbx_chem_comp_related.comp_id             07E 
_pdbx_chem_comp_related.related_comp_id     XYP 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  07E C1  XYP C1  "Carbohydrate core" 
2  07E C2  XYP C2  "Carbohydrate core" 
3  07E C3  XYP C3  "Carbohydrate core" 
4  07E C4  XYP C4  "Carbohydrate core" 
5  07E C5  XYP C5  "Carbohydrate core" 
6  07E O1  XYP O1  "Carbohydrate core" 
7  07E O2  XYP O2  "Carbohydrate core" 
8  07E O3  XYP O3  "Carbohydrate core" 
9  07E O4  XYP O4  "Carbohydrate core" 
10 07E O5  XYP O5  "Carbohydrate core" 
11 07E H1  XYP H1  "Carbohydrate core" 
12 07E H2  XYP H2  "Carbohydrate core" 
13 07E H3  XYP H3  "Carbohydrate core" 
14 07E H4  XYP H4  "Carbohydrate core" 
15 07E H51 XYP H51 "Carbohydrate core" 
16 07E H52 XYP H52 "Carbohydrate core" 
17 07E HO2 XYP HO2 "Carbohydrate core" 
18 07E HO3 XYP HO3 "Carbohydrate core" 
19 07E HO4 XYP HO4 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
07E "CARBOHYDRATE ISOMER"                 D        PDB ? 
07E "CARBOHYDRATE RING"                   pyranose PDB ? 
07E "CARBOHYDRATE ANOMER"                 beta     PDB ? 
07E "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
07E "Create component"         2011-09-23 RCSB 
07E "Initial release"          2017-07-12 RCSB 
07E "Other modification"       2020-07-03 RCSB 
07E "Modify parent residue"    2020-07-17 RCSB 
07E "Modify synonyms"          2020-07-17 RCSB 
07E "Modify internal type"     2020-07-17 RCSB 
07E "Modify linking type"      2020-07-17 RCSB 
07E "Modify atom id"           2020-07-17 RCSB 
07E "Modify component atom id" 2020-07-17 RCSB 
07E "Modify leaving atom flag" 2020-07-17 RCSB 
07E "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            07E 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               "C4'" 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
