data_Z9D
#

_chem_comp.id                                   Z9D
_chem_comp.name                                 4-deoxy-beta-D-xylo-hexopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-17
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       164.156
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1GA8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z9D  C1   C1   C  0  1  N  N  R  22.025  53.821  65.773   0.454   1.236  -0.244  C1   Z9D   1  
Z9D  C2   C2   C  0  1  N  N  R  22.285  52.460  65.211   1.490   0.209   0.220  C2   Z9D   2  
Z9D  C3   C3   C  0  1  N  N  S  22.302  51.487  66.383   1.096  -1.176  -0.302  C3   Z9D   3  
Z9D  C4   C4   C  0  1  N  N  N  23.469  51.896  67.335  -0.316  -1.511   0.189  C4   Z9D   4  
Z9D  C5   C5   C  0  1  N  N  S  23.349  53.194  67.910  -1.282  -0.419  -0.274  C5   Z9D   5  
Z9D  C6   C6   C  0  1  N  N  N  24.315  53.629  68.705  -2.684  -0.715   0.264  C6   Z9D   6  
Z9D  O1   O1   O  0  1  N  Y  N  21.781  55.096  65.145   0.785   2.521   0.286  O1   Z9D   7  
Z9D  O2   O2   O  0  1  N  N  N  21.240  52.137  64.311   2.777   0.564  -0.292  O2   Z9D   8  
Z9D  O3   O3   O  0  1  N  N  N  22.547  50.210  65.851   2.017  -2.152   0.188  O3   Z9D   9  
Z9D  O5   O5   O  0  1  N  N  N  23.097  54.158  66.749  -0.840   0.847   0.220  O5   Z9D  10  
Z9D  O6   O6   O  0  1  N  N  N  24.696  52.835  69.870  -3.608   0.239  -0.264  O6   Z9D  11  
Z9D  HO1  HO1  H  0  1  N  Y  N  21.654  55.759  65.813   0.169   3.222   0.032  HO1  Z9D  12  
Z9D  H1   H1   H  0  1  N  N  N  21.141  53.668  66.409   0.451   1.282  -1.333  H1   Z9D  13  
Z9D  H2   H2   H  0  1  N  N  N  23.262  52.444  64.705   1.523   0.192   1.309  H2   Z9D  14  
Z9D  H3   H3   H  0  1  N  N  N  21.347  51.531  66.927   1.111  -1.172  -1.392  H3   Z9D  15  
Z9D  H41  H41  H  0  1  N  N  N  23.515  51.163  68.154  -0.626  -2.471  -0.223  H41  Z9D  16  
Z9D  H42  H42  H  0  1  N  N  N  24.406  51.863  66.760  -0.319  -1.564   1.278  H42  Z9D  17  
Z9D  H5   H5   H  0  1  N  N  N  22.415  53.191  68.491  -1.309  -0.394  -1.364  H5   Z9D  18  
Z9D  H61  H61  H  0  1  N  N  N  25.216  53.739  68.084  -2.984  -1.718  -0.040  H61  Z9D  19  
Z9D  H62  H62  H  0  1  N  N  N  24.003  54.616  69.078  -2.676  -0.651   1.352  H62  Z9D  20  
Z9D  HO2  HO2  H  0  1  N  N  N  21.392  51.273  63.945   3.088   1.433  -0.005  HO2  Z9D  21  
Z9D  HO3  HO3  H  0  1  N  N  N  22.565  49.572  66.554   2.934  -1.997  -0.080  HO3  Z9D  22  
Z9D  HO6  HO6  H  0  1  N  N  N  25.397  53.274  70.338  -4.518   0.111   0.036  HO6  Z9D  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z9D  C1   C2   SING  N  N   1  
Z9D  C1   O1   SING  N  N   2  
Z9D  C1   O5   SING  N  N   3  
Z9D  C1   H1   SING  N  N   4  
Z9D  C2   C3   SING  N  N   5  
Z9D  C2   O2   SING  N  N   6  
Z9D  C2   H2   SING  N  N   7  
Z9D  C3   C4   SING  N  N   8  
Z9D  C3   O3   SING  N  N   9  
Z9D  C3   H3   SING  N  N  10  
Z9D  C4   C5   SING  N  N  11  
Z9D  C4   H41  SING  N  N  12  
Z9D  C4   H42  SING  N  N  13  
Z9D  C5   C6   SING  N  N  14  
Z9D  C5   O5   SING  N  N  15  
Z9D  C5   H5   SING  N  N  16  
Z9D  C6   O6   SING  N  N  17  
Z9D  C6   H61  SING  N  N  18  
Z9D  C6   H62  SING  N  N  19  
Z9D  O2   HO2  SING  N  N  20  
Z9D  O3   HO3  SING  N  N  21  
Z9D  O6   HO6  SING  N  N  22  
Z9D  HO1  O1   SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z9D  SMILES            ACDLabs               12.01  "OC1CC(OC(O)C1O)CO"  
Z9D  InChI             InChI                 1.03   "InChI=1S/C6H12O5/c7-2-3-1-4(8)5(9)6(10)11-3/h3-10H,1-2H2/t3-,4-,5+,6+/m0/s1"  
Z9D  InChIKey          InChI                 1.03   HDEMQQHXNOJATE-UNTFVMJOSA-N  
Z9D  SMILES_CANONICAL  CACTVS                3.370  "OC[C@@H]1C[C@H](O)[C@@H](O)[C@H](O)O1"  
Z9D  SMILES            CACTVS                3.370  "OC[CH]1C[CH](O)[CH](O)[CH](O)O1"  
Z9D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H](O[C@H]([C@@H]([C@H]1O)O)O)CO"  
Z9D  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(OC(C(C1O)O)O)CO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z9D  "SYSTEMATIC NAME"  ACDLabs               12.01  4-deoxy-beta-D-xylo-hexopyranose  
Z9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3R,4S,6S)-6-(hydroxymethyl)oxane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z9D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z9D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z9D  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z9D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z9D  "Create component"          2012-12-17  RCSB  
Z9D  "Modify atom id"            2020-05-09  RCSB  
Z9D  "Modify component atom id"  2020-07-17  RCSB  
Z9D  "Initial release"           2020-07-29  RCSB  
##
