data_YXD
#

_chem_comp.id                                   YXD
_chem_comp.name                                 "N-{5-[(3S)-3-(2-hydroxypropan-2-yl)pyrrolidin-1-yl]-2-(trifluoromethyl)pyridin-3-yl}-6-(1-methyl-1H-pyrazol-4-yl)pyridine-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H25 F3 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-05
_chem_comp.pdbx_modified_date                   2021-06-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       474.479
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YXD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7MCK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YXD  N1   N1   N  0  1  Y  N  N   0.575  -4.795  18.190   1.609  -3.105   0.431  N1   YXD   1  
YXD  N3   N2   N  0  1  Y  N  N   7.778  -5.831  15.237  -6.675  -0.246  -1.330  N3   YXD   2  
YXD  C4   C1   C  0  1  N  N  N   2.762  -5.184  17.232  -0.823  -3.085   0.202  C4   YXD   3  
YXD  C5   C2   C  0  1  Y  N  N  -0.241  -4.252  19.108   2.794  -2.544   0.562  C5   YXD   4  
YXD  C6   C3   C  0  1  Y  N  N   0.177  -3.332  20.073   2.925  -1.162   0.620  C6   YXD   5  
YXD  C7   C4   C  0  1  N  N  N  -2.050  -3.381  21.286   5.245  -1.470   0.246  C7   YXD   6  
YXD  C8   C5   C  0  1  N  N  N  -2.292  -3.061  22.759   6.315  -0.518  -0.346  C8   YXD   7  
YXD  C10  C6   C  0  1  N  N  N  -1.288  -1.350  24.477   6.201   1.918  -1.037  C10  YXD   8  
YXD  C13  C7   C  0  1  N  N  N  -0.394  -1.792  22.004   4.256   0.703   0.027  C13  YXD   9  
YXD  C15  C8   C  0  1  Y  N  N   6.669  -0.998  19.172  -1.990   3.023   1.398  C15  YXD  10  
YXD  C17  C9   C  0  1  Y  N  N   8.330  -1.930  17.729  -4.299   3.132   0.821  C17  YXD  11  
YXD  C20  C10  C  0  1  Y  N  N   7.008  -5.036  15.996  -5.418  -0.040  -0.892  C20  YXD  12  
YXD  C21  C11  C  0  1  N  N  N   7.363  -6.987  14.453  -7.166  -1.456  -1.995  C21  YXD  13  
YXD  C22  C12  C  0  1  Y  N  N   9.105  -4.407  16.062  -6.664   1.762  -0.437  C22  YXD  14  
YXD  F2   F1   F  0  1  N  N  N   2.090  -6.006  16.438  -1.686  -2.665   1.221  F2   YXD  15  
YXD  F    F2   F  0  1  N  N  N   3.692  -5.914  17.863  -0.638  -4.469   0.289  F    YXD  16  
YXD  F1   F3   F  0  1  N  N  N   3.446  -4.354  16.442  -1.380  -2.766  -1.041  F1   YXD  17  
YXD  C3   C13  C  0  1  Y  N  N   1.863  -4.443  18.201   0.505  -2.389   0.351  C3   YXD  18  
YXD  N2   N3   N  0  1  N  N  N  -0.719  -2.826  21.033   4.186  -0.575   0.758  N2   YXD  19  
YXD  C9   C14  C  0  1  N  N  S  -1.045  -2.306  23.277   5.432   0.597  -0.966  C9   YXD  20  
YXD  C12  C15  C  0  1  N  N  N  -0.991  -2.029  25.804   5.294   3.005  -1.619  C12  YXD  21  
YXD  O1   O1   O  0  1  N  N  N  -0.375  -0.241  24.374   6.618   2.298   0.276  O1   YXD  22  
YXD  C11  C16  C  0  1  N  N  N  -2.691  -0.760  24.486   7.429   1.746  -1.933  C11  YXD  23  
YXD  C14  C17  C  0  1  Y  N  N   1.521  -2.941  20.052   1.783  -0.370   0.539  C14  YXD  24  
YXD  C2   C18  C  0  1  Y  N  N   2.384  -3.502  19.110   0.551  -1.002   0.402  C2   YXD  25  
YXD  N    N4   N  0  1  N  N  N   3.766  -3.232  19.011  -0.625  -0.250   0.317  N    YXD  26  
YXD  C1   C19  C  0  1  N  N  N   4.480  -2.178  19.458  -0.675   0.987   0.851  C1   YXD  27  
YXD  O    O2   O  0  1  N  N  N   4.046  -1.320  20.221   0.324   1.478   1.339  O    YXD  28  
YXD  C    C20  C  0  1  Y  N  N   5.868  -2.096  18.885  -1.946   1.746   0.844  C    YXD  29  
YXD  N5   N5   N  0  1  Y  N  N   6.249  -3.079  18.051  -3.033   1.203   0.309  N5   YXD  30  
YXD  C18  C21  C  0  1  Y  N  N   7.454  -2.977  17.467  -4.188   1.848   0.283  C18  YXD  31  
YXD  C16  C22  C  0  1  Y  N  N   7.920  -0.926  18.587  -3.187   3.725   1.391  C16  YXD  32  
YXD  C19  C23  C  0  1  Y  N  N   7.836  -4.096  16.569  -5.375   1.203  -0.330  C19  YXD  33  
YXD  N4   N6   N  0  1  Y  N  N   9.078  -5.462  15.265  -7.434   0.893  -1.034  N4   YXD  34  
YXD  H1   H1   H  0  1  N  N  N  -1.281  -4.543  19.100   3.675  -3.166   0.624  H1   YXD  35  
YXD  H2   H2   H  0  1  N  N  N  -2.806  -2.898  20.649   4.848  -2.123  -0.530  H2   YXD  36  
YXD  H3   H3   H  0  1  N  N  N  -2.063  -4.467  21.112   5.671  -2.060   1.057  H3   YXD  37  
YXD  H4   H4   H  0  1  N  N  N  -3.186  -2.429  22.865   6.957  -0.116   0.438  H4   YXD  38  
YXD  H5   H5   H  0  1  N  N  N  -2.432  -3.992  23.328   6.904  -1.021  -1.112  H5   YXD  39  
YXD  H6   H6   H  0  1  N  N  N   0.695  -1.693  22.128   3.326   0.872  -0.516  H6   YXD  40  
YXD  H7   H7   H  0  1  N  N  N  -0.818  -0.822  21.706   4.432   1.523   0.724  H7   YXD  41  
YXD  H8   H8   H  0  1  N  N  N   6.323  -0.219  19.836  -1.103   3.461   1.832  H8   YXD  42  
YXD  H9   H9   H  0  1  N  N  N   9.309  -1.901  17.273  -5.245   3.652   0.801  H9   YXD  43  
YXD  H10  H10  H  0  1  N  N  N   5.940  -5.118  16.132  -4.594  -0.733  -0.972  H10  YXD  44  
YXD  H11  H11  H  0  1  N  N  N   8.240  -7.428  13.957  -7.040  -1.354  -3.073  H11  YXD  45  
YXD  H12  H12  H  0  1  N  N  N   6.903  -7.734  15.117  -6.600  -2.318  -1.643  H12  YXD  46  
YXD  H13  H13  H  0  1  N  N  N   6.632  -6.672  13.694  -8.222  -1.594  -1.764  H13  YXD  47  
YXD  H14  H14  H  0  1  N  N  N  10.001  -3.850  16.295  -6.963   2.739  -0.087  H14  YXD  48  
YXD  H15  H15  H  0  1  N  N  N  -0.371  -3.086  23.660   5.077   0.303  -1.954  H15  YXD  49  
YXD  H16  H16  H  0  1  N  N  N  -1.174  -1.323  26.627   4.976   2.715  -2.621  H16  YXD  50  
YXD  H17  H17  H  0  1  N  N  N  -1.645  -2.906  25.921   4.419   3.128  -0.981  H17  YXD  51  
YXD  H18  H18  H  0  1  N  N  N   0.061  -2.350  25.824   5.842   3.946  -1.670  H18  YXD  52  
YXD  H19  H19  H  0  1  N  N  N  -0.513   0.352  25.103   5.889   2.425   0.898  H19  YXD  53  
YXD  H20  H20  H  0  1  N  N  N  -2.804  -0.094  25.354   7.977   2.687  -1.983  H20  YXD  54  
YXD  H21  H21  H  0  1  N  N  N  -2.854  -0.187  23.561   8.075   0.972  -1.518  H21  YXD  55  
YXD  H22  H22  H  0  1  N  N  N  -3.430  -1.572  24.548   7.111   1.457  -2.934  H22  YXD  56  
YXD  H23  H23  H  0  1  N  N  N   1.887  -2.211  20.759   1.852   0.707   0.582  H23  YXD  57  
YXD  H24  H24  H  0  1  N  N  N   4.299  -3.931  18.535  -1.405  -0.618  -0.127  H24  YXD  58  
YXD  H25  H25  H  0  1  N  N  N   8.572  -0.092  18.799  -3.247   4.717   1.815  H25  YXD  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YXD  C21  N3   SING  N  N   1  
YXD  N3   N4   SING  Y  N   2  
YXD  N3   C20  SING  Y  N   3  
YXD  N4   C22  DOUB  Y  N   4  
YXD  C20  C19  DOUB  Y  N   5  
YXD  C22  C19  SING  Y  N   6  
YXD  F2   C4   SING  N  N   7  
YXD  F1   C4   SING  N  N   8  
YXD  C19  C18  SING  N  N   9  
YXD  C4   F    SING  N  N  10  
YXD  C4   C3   SING  N  N  11  
YXD  C18  C17  DOUB  Y  N  12  
YXD  C18  N5   SING  Y  N  13  
YXD  C17  C16  SING  Y  N  14  
YXD  N5   C    DOUB  Y  N  15  
YXD  N1   C3   DOUB  Y  N  16  
YXD  N1   C5   SING  Y  N  17  
YXD  C3   C2   SING  Y  N  18  
YXD  C16  C15  DOUB  Y  N  19  
YXD  C    C15  SING  Y  N  20  
YXD  C    C1   SING  N  N  21  
YXD  N    C2   SING  N  N  22  
YXD  N    C1   SING  N  N  23  
YXD  C5   C6   DOUB  Y  N  24  
YXD  C2   C14  DOUB  Y  N  25  
YXD  C1   O    DOUB  N  N  26  
YXD  C14  C6   SING  Y  N  27  
YXD  C6   N2   SING  N  N  28  
YXD  N2   C7   SING  N  N  29  
YXD  N2   C13  SING  N  N  30  
YXD  C7   C8   SING  N  N  31  
YXD  C13  C9   SING  N  N  32  
YXD  C8   C9   SING  N  N  33  
YXD  C9   C10  SING  N  N  34  
YXD  O1   C10  SING  N  N  35  
YXD  C10  C11  SING  N  N  36  
YXD  C10  C12  SING  N  N  37  
YXD  C5   H1   SING  N  N  38  
YXD  C7   H2   SING  N  N  39  
YXD  C7   H3   SING  N  N  40  
YXD  C8   H4   SING  N  N  41  
YXD  C8   H5   SING  N  N  42  
YXD  C13  H6   SING  N  N  43  
YXD  C13  H7   SING  N  N  44  
YXD  C15  H8   SING  N  N  45  
YXD  C17  H9   SING  N  N  46  
YXD  C20  H10  SING  N  N  47  
YXD  C21  H11  SING  N  N  48  
YXD  C21  H12  SING  N  N  49  
YXD  C21  H13  SING  N  N  50  
YXD  C22  H14  SING  N  N  51  
YXD  C9   H15  SING  N  N  52  
YXD  C12  H16  SING  N  N  53  
YXD  C12  H17  SING  N  N  54  
YXD  C12  H18  SING  N  N  55  
YXD  O1   H19  SING  N  N  56  
YXD  C11  H20  SING  N  N  57  
YXD  C11  H21  SING  N  N  58  
YXD  C11  H22  SING  N  N  59  
YXD  C14  H23  SING  N  N  60  
YXD  N    H24  SING  N  N  61  
YXD  C16  H25  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YXD  SMILES            ACDLabs               12.01  "Cn1cc(cn1)c1nc(ccc1)C(=O)Nc1cc(cnc1C(F)(F)F)N1CCC(C1)C(C)(C)O"  
YXD  InChI             InChI                 1.03   "InChI=1S/C23H25F3N6O2/c1-22(2,34)15-7-8-32(13-15)16-9-19(20(27-11-16)23(24,25)26)30-21(33)18-6-4-5-17(29-18)14-10-28-31(3)12-14/h4-6,9-12,15,34H,7-8,13H2,1-3H3,(H,30,33)/t15-/m0/s1"  
YXD  InChIKey          InChI                 1.03   VNRCXZCFCYFZQN-HNNXBMFYSA-N  
YXD  SMILES_CANONICAL  CACTVS                3.385  "Cn1cc(cn1)c2cccc(n2)C(=O)Nc3cc(cnc3C(F)(F)F)N4CC[C@@H](C4)C(C)(C)O"  
YXD  SMILES            CACTVS                3.385  "Cn1cc(cn1)c2cccc(n2)C(=O)Nc3cc(cnc3C(F)(F)F)N4CC[CH](C4)C(C)(C)O"  
YXD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)([C@H]1CCN(C1)c2cc(c(nc2)C(F)(F)F)NC(=O)c3cccc(n3)c4cnn(c4)C)O"  
YXD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C1CCN(C1)c2cc(c(nc2)C(F)(F)F)NC(=O)c3cccc(n3)c4cnn(c4)C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YXD  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{5-[(3S)-3-(2-hydroxypropan-2-yl)pyrrolidin-1-yl]-2-(trifluoromethyl)pyridin-3-yl}-6-(1-methyl-1H-pyrazol-4-yl)pyridine-2-carboxamide"  
YXD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "6-(1-methylpyrazol-4-yl)-~{N}-[5-[(3~{S})-3-(2-oxidanylpropan-2-yl)pyrrolidin-1-yl]-2-(trifluoromethyl)pyridin-3-yl]pyridine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YXD  "Create component"  2021-04-05  RCSB  
YXD  "Initial release"   2021-06-16  RCSB  
##
