data_YDD
# 
_chem_comp.id                                    YDD 
_chem_comp.name                                  "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S)-3,4-bis(oxidanyl)-5-tetradecoxy-oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H51 N5 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-11-08 
_chem_comp.pdbx_modified_date                    2025-06-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        755.688 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6L71 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDD N    N1  N 0 1 Y N N N N N -19.661 14.929 -3.503  -2.926 -5.457 0.670  N    YDD 1   
YDD C    C1  C 0 1 N N N N N N -11.807 25.962 -15.113 15.421 -3.432 -0.474 C    YDD 2   
YDD O    O1  O 0 1 N N N N N N -13.226 13.557 -16.198 0.994  6.175  1.125  O    YDD 3   
YDD C1   C2  C 0 1 N N N N N N -13.072 26.072 -15.934 14.193 -2.886 -1.205 C1   YDD 4   
YDD C10  C3  C 0 1 N N N N N N -13.150 16.721 -17.959 5.076  3.470  0.714  C10  YDD 5   
YDD C11  C4  C 0 1 N N N N N N -11.849 16.092 -17.552 3.848  4.016  -0.017 C11  YDD 6   
YDD C12  C5  C 0 1 N N N N N N -11.924 14.643 -17.970 3.007  4.850  0.952  C12  YDD 7   
YDD C13  C6  C 0 1 N N N N N N -11.932 13.768 -16.751 1.779  5.396  0.221  C13  YDD 8   
YDD C14  C7  C 0 1 N N S N N N -13.436 13.992 -14.857 -0.183 6.735  0.540  C14  YDD 9   
YDD C15  C8  C 0 1 N N R N N N -14.204 12.652 -13.108 -2.332 5.939  1.061  C15  YDD 10  
YDD C16  C9  C 0 1 N N N N N N -15.371 12.493 -12.160 -3.571 5.530  0.263  C16  YDD 11  
YDD C17  C10 C 0 1 N N N N N N -17.941 13.027 -6.913  -4.005 -1.906 -2.244 C17  YDD 12  
YDD C18  C11 C 0 1 N N R N N N -18.174 12.481 -5.521  -2.903 -2.880 -1.823 C18  YDD 13  
YDD C19  C12 C 0 1 N N R N N N -19.372 13.516 -3.808  -2.395 -4.606 -0.398 C19  YDD 14  
YDD C2   C13 C 0 1 N N N N N N -14.012 24.919 -15.613 13.352 -2.052 -0.236 C2   YDD 15  
YDD C20  C14 C 0 1 N N R N N N -20.391 12.764 -4.648  -2.573 -5.293 -1.770 C20  YDD 16  
YDD C21  C15 C 0 1 N N S N N N -19.521 11.786 -5.418  -2.914 -4.130 -2.730 C21  YDD 17  
YDD C22  C16 C 0 1 Y N N N N N -20.127 15.883 -4.323  -4.186 -5.408 1.189  C22  YDD 18  
YDD C23  C17 C 0 1 Y N N N N N -19.739 16.804 -2.394  -3.154 -6.987 2.259  C23  YDD 19  
YDD C24  C18 C 0 1 Y N N N N N -19.571 17.580 -1.263  -2.717 -8.040 3.081  C24  YDD 20  
YDD C25  C19 C 0 1 Y N N N N N -18.756 15.715 -0.098  -0.655 -7.943 2.048  C25  YDD 21  
YDD C26  C20 C 0 1 Y N N N N N -19.395 15.469 -2.322  -2.249 -6.452 1.328  C26  YDD 22  
YDD C27  C21 C 0 1 N N S N N N -13.124 13.581 -12.572 -2.342 7.466  1.325  C27  YDD 23  
YDD C28  C22 C 0 1 N N R N N N -12.326 13.717 -13.846 -0.826 7.743  1.516  C28  YDD 24  
YDD C3   C23 C 0 1 N N N N N N -14.859 24.543 -16.824 12.124 -1.505 -0.967 C3   YDD 25  
YDD C4   C24 C 0 1 N N N N N N -15.502 23.182 -16.602 11.283 -0.671 0.001  C4   YDD 26  
YDD C5   C25 C 0 1 N N N N N N -15.191 22.257 -17.767 10.055 -0.125 -0.729 C5   YDD 27  
YDD C6   C26 C 0 1 N N N N N N -15.521 20.823 -17.392 9.214  0.709  0.239  C6   YDD 28  
YDD C7   C27 C 0 1 N N N N N N -14.681 19.868 -18.215 7.986  1.255  -0.492 C7   YDD 29  
YDD C8   C28 C 0 1 N N N N N N -14.732 18.498 -17.570 7.145  2.089  0.477  C8   YDD 30  
YDD C9   C29 C 0 1 N N N N N N -13.355 17.995 -17.183 5.917  2.636  -0.254 C9   YDD 31  
YDD N1   N2  N 0 1 Y N N N N N -20.193 17.047 -3.638  -4.319 -6.309 2.118  N1   YDD 32  
YDD N2   N3  N 0 1 N N N N N N -19.890 18.889 -1.283  -3.564 -8.606 4.017  N2   YDD 33  
YDD N3   N4  N 0 1 Y N N N N N -19.079 17.016 -0.146  -1.470 -8.479 2.938  N3   YDD 34  
YDD N4   N5  N 0 1 Y N N N N N -18.905 14.942 -1.171  -1.021 -6.957 1.258  N4   YDD 35  
YDD O1   O2  O 0 1 N N N N N N -14.561 13.260 -14.349 -1.142 5.700  0.292  O1   YDD 36  
YDD O10  O3  O 0 1 N N N N N N -21.331 12.065 -3.831  -1.359 -5.932 -2.171 O10  YDD 37  
YDD O11  O4  O 0 1 N N N N N N -19.359 10.555 -4.706  -1.923 -4.017 -3.752 O11  YDD 38  
YDD O12  O5  O 0 1 N N N N N N -12.352 13.077 -11.493 -3.076 7.779  2.510  O12  YDD 39  
YDD O13  O6  O 0 1 N N N N N N -11.658 12.467 -14.007 -0.426 7.473  2.862  O13  YDD 40  
YDD O2   O7  O 0 1 N N N N N N -14.912 11.776 -11.016 -3.603 4.108  0.130  O2   YDD 41  
YDD O3   O8  O 0 1 N N N N N N -14.973 11.276 -8.460  -6.169 3.533  0.120  O3   YDD 42  
YDD O4   O9  O 0 1 N N N N N N -14.079 13.514 -9.334  -4.887 3.862  -2.029 O4   YDD 43  
YDD O5   O10 O 0 1 N N N N N N -16.507 13.126 -9.571  -4.421 1.757  -0.717 O5   YDD 44  
YDD O6   O11 O 0 1 N N N N N N -19.054 13.053 -9.841  -6.394 0.095  -1.222 O6   YDD 45  
YDD O7   O12 O 0 1 N N N N N N -17.637 10.946 -10.143 -4.909 0.971  -3.066 O7   YDD 46  
YDD O8   O13 O 0 1 N N N N N N -17.879 11.916 -7.797  -3.904 -0.708 -1.472 O8   YDD 47  
YDD O9   O14 O 0 1 N N N N N N -18.177 13.553 -4.584  -3.159 -3.385 -0.494 O9   YDD 48  
YDD P    P1  P 0 1 N N N N N N -15.071 12.440 -9.561  -4.773 3.326  -0.654 P    YDD 49  
YDD P1   P2  P 0 1 N N N N N N -17.789 12.201 -9.368  -4.907 0.538  -1.650 P1   YDD 50  
YDD H9   H1  H 0 1 N N N N N N -11.138 26.801 -15.355 16.018 -2.602 -0.096 H9   YDD 51  
YDD H10  H2  H 0 1 N N N N N N -12.061 25.993 -14.043 15.100 -4.057 0.360  H10  YDD 52  
YDD H11  H3  H 0 1 N N N N N N -11.302 25.012 -15.343 16.020 -4.026 -1.164 H11  YDD 53  
YDD H12  H4  H 0 1 N N N N N N -12.814 26.043 -17.003 14.514 -2.261 -2.038 H12  YDD 54  
YDD H13  H5  H 0 1 N N N N N N -13.573 27.024 -15.703 13.596 -3.716 -1.582 H13  YDD 55  
YDD H30  H6  H 0 1 N N N N N N -13.127 16.947 -19.035 5.674  4.300  1.092  H30  YDD 56  
YDD H31  H7  H 0 1 N N N N N N -13.976 16.026 -17.747 4.755  2.845  1.548  H31  YDD 57  
YDD H33  H8  H 0 1 N N N N N N -11.715 16.167 -16.463 4.169  4.641  -0.850 H33  YDD 58  
YDD H32  H9  H 0 1 N N N N N N -11.010 16.591 -18.060 3.251  3.186  -0.394 H32  YDD 59  
YDD H34  H10 H 0 1 N N N N N N -12.845 14.476 -18.547 2.686  4.225  1.785  H34  YDD 60  
YDD H35  H11 H 0 1 N N N N N N -11.051 14.396 -18.593 3.605  5.680  1.329  H35  YDD 61  
YDD H131 H12 H 0 0 N N N N N N -11.509 12.790 -17.025 1.182  4.566  -0.157 H131 YDD 62  
YDD H132 H13 H 0 0 N N N N N N -11.300 14.239 -15.983 2.101  6.021  -0.613 H132 YDD 63  
YDD H    H14 H 0 1 N N N N N N -13.659 15.069 -14.845 0.071  7.235  -0.395 H    YDD 64  
YDD H1   H15 H 0 1 N N N N N N -13.758 11.663 -13.290 -2.292 5.393  2.003  H1   YDD 65  
YDD H36  H16 H 0 1 N N N N N N -15.743 13.483 -11.856 -4.467 5.867  0.785  H36  YDD 66  
YDD H37  H17 H 0 1 N N N N N N -16.179 11.933 -12.653 -3.534 5.986  -0.726 H37  YDD 67  
YDD H40  H18 H 0 1 N N N N N N -16.994 13.587 -6.944  -3.894 -1.667 -3.302 H40  YDD 68  
YDD H41  H19 H 0 1 N N N N N N -18.769 13.691 -7.201  -4.979 -2.365 -2.076 H41  YDD 69  
YDD H2   H20 H 0 1 N N N N N N -17.379 11.761 -5.278  -1.929 -2.391 -1.864 H2   YDD 70  
YDD H3   H21 H 0 1 N N N N N N -19.202 12.964 -2.872  -1.343 -4.385 -0.218 H3   YDD 71  
YDD H15  H22 H 0 1 N N N N N N -14.677 25.217 -14.789 13.031 -2.677 0.597  H15  YDD 72  
YDD H14  H23 H 0 1 N N N N N N -13.417 24.046 -15.307 13.949 -1.222 0.141  H14  YDD 73  
YDD H4   H24 H 0 1 N N N N N N -20.894 13.453 -5.342  -3.389 -6.013 -1.734 H4   YDD 74  
YDD H5   H25 H 0 1 N N N N N N -19.938 11.618 -6.422  -3.901 -4.274 -3.170 H5   YDD 75  
YDD H44  H26 H 0 1 N N N N N N -20.403 15.744 -5.358  -4.959 -4.723 0.874  H44  YDD 76  
YDD H47  H27 H 0 1 N N N N N N -18.372 15.292 0.818   0.350  -8.330 1.965  H47  YDD 77  
YDD H6   H28 H 0 1 N N N N N N -13.573 14.551 -12.313 -2.736 8.011  0.467  H6   YDD 78  
YDD H7   H29 H 0 1 N N N N N N -11.627 14.564 -13.789 -0.580 8.767  1.235  H7   YDD 79  
YDD H16  H30 H 0 1 N N N N N N -14.220 24.503 -17.718 12.445 -0.881 -1.800 H16  YDD 80  
YDD H17  H31 H 0 1 N N N N N N -15.645 25.299 -16.969 11.527 -2.336 -1.344 H17  YDD 81  
YDD H18  H32 H 0 1 N N N N N N -16.592 23.305 -16.517 10.962 -1.296 0.835  H18  YDD 82  
YDD H19  H33 H 0 1 N N N N N N -15.109 22.742 -15.674 11.880 0.159  0.379  H19  YDD 83  
YDD H21  H34 H 0 1 N N N N N N -14.122 22.332 -18.017 10.376 0.500  -1.563 H21  YDD 84  
YDD H20  H35 H 0 1 N N N N N N -15.793 22.554 -18.639 9.458  -0.955 -1.107 H20  YDD 85  
YDD H22  H36 H 0 1 N N N N N N -16.587 20.631 -17.586 8.893  0.084  1.072  H22  YDD 86  
YDD H23  H37 H 0 1 N N N N N N -15.309 20.667 -16.324 9.811  1.539  0.616  H23  YDD 87  
YDD H25  H38 H 0 1 N N N N N N -13.641 20.224 -18.247 8.307  1.880  -1.325 H25  YDD 88  
YDD H24  H39 H 0 1 N N N N N N -15.081 19.811 -19.238 7.389  0.425  -0.869 H24  YDD 89  
YDD H27  H40 H 0 1 N N N N N N -15.355 18.555 -16.665 6.824  1.465  1.310  H27  YDD 90  
YDD H26  H41 H 0 1 N N N N N N -15.181 17.789 -18.280 7.742  2.920  0.854  H26  YDD 91  
YDD H29  H42 H 0 1 N N N N N N -13.310 17.796 -16.102 5.320  1.805  -0.632 H29  YDD 92  
YDD H28  H43 H 0 1 N N N N N N -12.587 18.735 -17.452 6.238  3.260  -1.088 H28  YDD 93  
YDD H46  H44 H 0 1 N N N N N N -19.700 19.293 -0.388  -4.471 -8.278 4.112  H46  YDD 94  
YDD H45  H45 H 0 1 N N N N N N -19.345 19.354 -1.981  -3.250 -9.333 4.578  H45  YDD 95  
YDD H42  H46 H 0 1 N N N N N N -21.866 12.691 -3.357  -1.415 -6.379 -3.027 H42  YDD 96  
YDD H43  H47 H 0 1 N N N N N N -20.198 10.115 -4.638  -1.886 -4.776 -4.351 H43  YDD 97  
YDD H48  H48 H 0 1 N N N N N N -12.840 13.170 -10.683 -3.110 8.724  2.715  H48  YDD 98  
YDD H49  H49 H 0 1 N N N N N N -10.987 12.378 -13.341 0.527  7.547  3.011  H49  YDD 99  
YDD H38  H50 H 0 1 N N N N N N -14.282 11.482 -7.841  -6.167 3.204  1.030  H38  YDD 100 
YDD H39  H51 H 0 1 N N N N N N -19.496 12.599 -10.549 -6.468 -0.201 -0.305 H39  YDD 101 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDD C7  C8   SING N N 1   
YDD C7  C6   SING N N 2   
YDD C12 C11  SING N N 3   
YDD C12 C13  SING N N 4   
YDD C10 C11  SING N N 5   
YDD C10 C9   SING N N 6   
YDD C5  C6   SING N N 7   
YDD C5  C4   SING N N 8   
YDD C8  C9   SING N N 9   
YDD C3  C4   SING N N 10  
YDD C3  C2   SING N N 11  
YDD C13 O    SING N N 12  
YDD O   C14  SING N N 13  
YDD C1  C2   SING N N 14  
YDD C1  C    SING N N 15  
YDD C14 O1   SING N N 16  
YDD C14 C28  SING N N 17  
YDD O1  C15  SING N N 18  
YDD O13 C28  SING N N 19  
YDD C28 C27  SING N N 20  
YDD C15 C27  SING N N 21  
YDD C15 C16  SING N N 22  
YDD C27 O12  SING N N 23  
YDD C16 O2   SING N N 24  
YDD O2  P    SING N N 25  
YDD O7  P1   DOUB N N 26  
YDD O6  P1   SING N N 27  
YDD O5  P    SING N N 28  
YDD O5  P1   SING N N 29  
YDD P   O4   DOUB N N 30  
YDD P   O3   SING N N 31  
YDD P1  O8   SING N N 32  
YDD O8  C17  SING N N 33  
YDD C17 C18  SING N N 34  
YDD C18 C21  SING N N 35  
YDD C18 O9   SING N N 36  
YDD C21 O11  SING N N 37  
YDD C21 C20  SING N N 38  
YDD C20 O10  SING N N 39  
YDD C20 C19  SING N N 40  
YDD O9  C19  SING N N 41  
YDD C22 N1   DOUB Y N 42  
YDD C22 N    SING Y N 43  
YDD C19 N    SING N N 44  
YDD N1  C23  SING Y N 45  
YDD N   C26  SING Y N 46  
YDD C23 C26  DOUB Y N 47  
YDD C23 C24  SING Y N 48  
YDD C26 N4   SING Y N 49  
YDD N2  C24  SING N N 50  
YDD C24 N3   DOUB Y N 51  
YDD N4  C25  DOUB Y N 52  
YDD N3  C25  SING Y N 53  
YDD C   H9   SING N N 54  
YDD C   H10  SING N N 55  
YDD C   H11  SING N N 56  
YDD C1  H12  SING N N 57  
YDD C1  H13  SING N N 58  
YDD C10 H30  SING N N 59  
YDD C10 H31  SING N N 60  
YDD C11 H33  SING N N 61  
YDD C11 H32  SING N N 62  
YDD C12 H34  SING N N 63  
YDD C12 H35  SING N N 64  
YDD C13 H131 SING N N 65  
YDD C13 H132 SING N N 66  
YDD C14 H    SING N N 67  
YDD C15 H1   SING N N 68  
YDD C16 H36  SING N N 69  
YDD C16 H37  SING N N 70  
YDD C17 H40  SING N N 71  
YDD C17 H41  SING N N 72  
YDD C18 H2   SING N N 73  
YDD C19 H3   SING N N 74  
YDD C2  H15  SING N N 75  
YDD C2  H14  SING N N 76  
YDD C20 H4   SING N N 77  
YDD C21 H5   SING N N 78  
YDD C22 H44  SING N N 79  
YDD C25 H47  SING N N 80  
YDD C27 H6   SING N N 81  
YDD C28 H7   SING N N 82  
YDD C3  H16  SING N N 83  
YDD C3  H17  SING N N 84  
YDD C4  H18  SING N N 85  
YDD C4  H19  SING N N 86  
YDD C5  H21  SING N N 87  
YDD C5  H20  SING N N 88  
YDD C6  H22  SING N N 89  
YDD C6  H23  SING N N 90  
YDD C7  H25  SING N N 91  
YDD C7  H24  SING N N 92  
YDD C8  H27  SING N N 93  
YDD C8  H26  SING N N 94  
YDD C9  H29  SING N N 95  
YDD C9  H28  SING N N 96  
YDD N2  H46  SING N N 97  
YDD N2  H45  SING N N 98  
YDD O10 H42  SING N N 99  
YDD O11 H43  SING N N 100 
YDD O12 H48  SING N N 101 
YDD O13 H49  SING N N 102 
YDD O3  H38  SING N N 103 
YDD O6  H39  SING N N 104 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDD InChI            InChI                1.03  "InChI=1S/C29H51N5O14P2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-43-29-25(38)23(36)20(47-29)16-45-50(41,42)48-49(39,40)44-15-19-22(35)24(37)28(46-19)34-18-33-21-26(30)31-17-32-27(21)34/h17-20,22-25,28-29,35-38H,2-16H2,1H3,(H,39,40)(H,41,42)(H2,30,31,32)/t19-,20-,22-,23-,24-,25-,28-,29+/m1/s1" 
YDD InChIKey         InChI                1.03  XDVQERDQBQWVRC-UHUMEYFMSA-N                                                                                                                                                                                                                                                                    
YDD SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCCCO[C@H]1O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]1O"                                                                                                                                                                         
YDD SMILES           CACTVS               3.385 "CCCCCCCCCCCCCCO[CH]1O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH](O)[CH]1O"                                                                                                                                                                                   
YDD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCO[C@@H]1[C@@H]([C@@H]([C@H](O1)COP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O)O"                                                                                                                                                                        
YDD SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCOC1C(C(C(O1)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O)O"                                                                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           YDD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{S})-3,4-bis(oxidanyl)-5-tetradecoxy-oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDD "Create component" 2019-11-08 PDBJ 
YDD "Initial release"  2021-03-31 RCSB 
YDD "Modify PCM"       2025-06-18 PDBJ 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YDD 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
