data_YBD
#

_chem_comp.id                                   YBD
_chem_comp.name                                 "~{N}-[(1~{R})-2-azanyl-1-[5-(hydroxymethyl)-1,3-thiazol-2-yl]ethyl]-5-(4-chloranyl-3-fluoranyl-phenyl)-1~{H}-pyrrole-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H16 Cl F N4 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-16
_chem_comp.pdbx_modified_date                   2021-11-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       394.851
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YBD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LQU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YBD  C12   C1   C   0  1  N  N  N  208.285  -29.583  46.303  -3.627   1.839   1.664  C12   YBD   1  
YBD  C11   C2   C   0  1  N  N  R  208.322  -28.058  46.357  -3.264   1.302   0.278  C11   YBD   2  
YBD  C16   C3   C   0  1  Y  N  N  204.819  -26.588  46.829  -3.996  -2.280   0.399  C16   YBD   3  
YBD  C14   C4   C   0  1  Y  N  N  206.976  -27.532  46.848  -3.841  -0.080   0.108  C14   YBD   4  
YBD  C25   C5   C   0  1  Y  N  N  210.872  -22.898  38.881   5.784  -1.066   0.021  C25   YBD   5  
YBD  C23   C6   C   0  1  Y  N  N  209.428  -24.812  38.816   4.881   1.090  -0.501  C23   YBD   6  
YBD  C24   C7   C   0  1  Y  N  N  210.091  -23.788  38.162   5.966   0.249  -0.371  C24   YBD   7  
YBD  C17   C8   C   0  1  Y  N  N  205.044  -26.861  48.203  -5.056  -2.157  -0.406  C17   YBD   8  
YBD  C18   C9   C   0  1  N  N  N  204.052  -26.572  49.327  -5.959  -3.275  -0.859  C18   YBD   9  
YBD  C02   C10  C   0  1  Y  N  N  210.989  -23.032  40.254   4.510  -1.546   0.285  C02   YBD  10  
YBD  C03   C11  C   0  1  Y  N  N  210.326  -24.056  40.909   3.416  -0.713   0.158  C03   YBD  11  
YBD  C04   C12  C   0  1  Y  N  N  209.545  -24.946  40.190   3.596   0.614  -0.236  C04   YBD  12  
YBD  C05   C13  C   0  1  Y  N  N  208.815  -26.075  40.915   2.429   1.511  -0.374  C05   YBD  13  
YBD  C06   C14  C   0  1  Y  N  N  208.082  -27.082  40.327   2.470   2.834  -0.759  C06   YBD  14  
YBD  C07   C15  C   0  1  Y  N  N  207.601  -27.874  41.323   1.162   3.314  -0.761  C07   YBD  15  
YBD  C08   C16  C   0  1  Y  N  N  208.040  -27.351  42.520   0.339   2.275  -0.376  C08   YBD  16  
YBD  C09   C17  C   0  1  N  N  N  207.749  -27.907  43.912  -1.119   2.335  -0.242  C09   YBD  17  
YBD  F01   F1   F   0  1  N  N  N  211.759  -22.155  40.962   4.339  -2.831   0.667  F01   YBD  18  
YBD  N10   N1   N   0  1  N  N  N  208.594  -27.533  45.031  -1.806   1.242   0.144  N10   YBD  19  
YBD  N13   N2   N   0  1  N  N  N  209.612  -30.129  46.521  -2.965   3.134   1.876  N13   YBD  20  
YBD  N15   N3   N   0  1  Y  N  N  205.984  -26.996  46.035  -3.369  -1.150   0.653  N15   YBD  21  
YBD  N22   N4   N   0  1  Y  N  N  208.773  -26.262  42.242   1.128   1.170  -0.146  N22   YBD  22  
YBD  O19   O1   O   0  1  N  N  N  204.225  -27.538  50.327  -7.034  -3.426   0.070  O19   YBD  23  
YBD  O21   O2   O   0  1  N  N  N  206.834  -28.642  44.079  -1.710   3.373  -0.479  O21   YBD  24  
YBD  S20   S1   S   0  1  Y  N  N  206.492  -27.519  48.402  -5.211  -0.457  -0.842  S20   YBD  25  
YBD  CL26  CL1  CL  0  0  N  N  N  211.727  -21.578  38.037   7.155  -2.121   0.175  CL26  YBD  26  
YBD  H1    H1   H   0  1  N  N  N  207.606  -29.957  47.084  -4.707   1.968   1.733  H1    YBD  27  
YBD  H2    H2   H   0  1  N  N  N  207.919  -29.902  45.316  -3.296   1.133   2.426  H2    YBD  28  
YBD  H3    H3   H   0  1  N  N  N  209.109  -27.742  47.058  -3.672   1.963  -0.486  H3    YBD  29  
YBD  H4    H4   H   0  1  N  N  N  203.921  -26.144  46.426  -3.682  -3.228   0.810  H4    YBD  30  
YBD  H5    H5   H   0  1  N  N  N  208.820  -25.506  38.255   5.026   2.116  -0.806  H5    YBD  31  
YBD  H6    H6   H   0  1  N  N  N  209.999  -23.683  37.091   6.961   0.617  -0.575  H6    YBD  32  
YBD  H7    H7   H   0  1  N  N  N  204.241  -25.570  49.741  -6.361  -3.040  -1.845  H7    YBD  33  
YBD  H8    H8   H   0  1  N  N  N  203.024  -26.620  48.937  -5.390  -4.204  -0.911  H8    YBD  34  
YBD  H9    H9   H   0  1  N  N  N  210.418  -24.161  41.980   2.424  -1.087   0.364  H9    YBD  35  
YBD  H10   H10  H   0  1  N  N  N  207.919  -27.218  39.268   3.356   3.397  -1.013  H10   YBD  36  
YBD  H11   H11  H   0  1  N  N  N  206.986  -28.753  41.198   0.850   4.316  -1.018  H11   YBD  37  
YBD  H12   H12  H   0  1  N  N  N  209.365  -26.912  44.888  -1.335   0.415   0.334  H12   YBD  38  
YBD  H13   H13  H   0  1  N  N  N  209.573  -31.127  46.483  -3.205   3.787   1.145  H13   YBD  39  
YBD  H14   H14  H   0  1  N  N  N  210.231  -29.793  45.812  -3.189   3.510   2.785  H14   YBD  40  
YBD  H16   H16  H   0  1  N  N  N  209.220  -25.679  42.921   0.812   0.297   0.133  H16   YBD  41  
YBD  H17   H17  H   0  1  N  N  N  203.615  -27.373  51.036  -7.657  -4.130  -0.160  H17   YBD  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YBD  CL26  C25  SING  N  N   1  
YBD  C24   C23  DOUB  Y  N   2  
YBD  C24   C25  SING  Y  N   3  
YBD  C23   C04  SING  Y  N   4  
YBD  C25   C02  DOUB  Y  N   5  
YBD  C04   C03  DOUB  Y  N   6  
YBD  C04   C05  SING  N  N   7  
YBD  C02   C03  SING  Y  N   8  
YBD  C02   F01  SING  N  N   9  
YBD  C06   C05  DOUB  Y  N  10  
YBD  C06   C07  SING  Y  N  11  
YBD  C05   N22  SING  Y  N  12  
YBD  C07   C08  DOUB  Y  N  13  
YBD  N22   C08  SING  Y  N  14  
YBD  C08   C09  SING  N  N  15  
YBD  C09   O21  DOUB  N  N  16  
YBD  C09   N10  SING  N  N  17  
YBD  N10   C11  SING  N  N  18  
YBD  N15   C16  SING  Y  N  19  
YBD  N15   C14  DOUB  Y  N  20  
YBD  C12   C11  SING  N  N  21  
YBD  C12   N13  SING  N  N  22  
YBD  C11   C14  SING  N  N  23  
YBD  C16   C17  DOUB  Y  N  24  
YBD  C14   S20  SING  Y  N  25  
YBD  C17   S20  SING  Y  N  26  
YBD  C17   C18  SING  N  N  27  
YBD  C18   O19  SING  N  N  28  
YBD  C12   H1   SING  N  N  29  
YBD  C12   H2   SING  N  N  30  
YBD  C11   H3   SING  N  N  31  
YBD  C16   H4   SING  N  N  32  
YBD  C23   H5   SING  N  N  33  
YBD  C24   H6   SING  N  N  34  
YBD  C18   H7   SING  N  N  35  
YBD  C18   H8   SING  N  N  36  
YBD  C03   H9   SING  N  N  37  
YBD  C06   H10  SING  N  N  38  
YBD  C07   H11  SING  N  N  39  
YBD  N10   H12  SING  N  N  40  
YBD  N13   H13  SING  N  N  41  
YBD  N13   H14  SING  N  N  42  
YBD  N22   H16  SING  N  N  43  
YBD  O19   H17  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YBD  InChI             InChI                 1.03   "InChI=1S/C17H16ClFN4O2S/c18-11-2-1-9(5-12(11)19)13-3-4-14(22-13)16(25)23-15(6-20)17-21-7-10(8-24)26-17/h1-5,7,15,22,24H,6,8,20H2,(H,23,25)/t15-/m1/s1"  
YBD  InChIKey          InChI                 1.03   BCGYPAUBMXRDJQ-OAHLLOKOSA-N  
YBD  SMILES_CANONICAL  CACTVS                3.385  "NC[C@@H](NC(=O)c1[nH]c(cc1)c2ccc(Cl)c(F)c2)c3sc(CO)cn3"  
YBD  SMILES            CACTVS                3.385  "NC[CH](NC(=O)c1[nH]c(cc1)c2ccc(Cl)c(F)c2)c3sc(CO)cn3"  
YBD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1c2ccc([nH]2)C(=O)N[C@H](CN)c3ncc(s3)CO)F)Cl"  
YBD  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(c(cc1c2ccc([nH]2)C(=O)NC(CN)c3ncc(s3)CO)F)Cl"  
#
_pdbx_chem_comp_identifier.comp_id          YBD
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(1~{R})-2-azanyl-1-[5-(hydroxymethyl)-1,3-thiazol-2-yl]ethyl]-5-(4-chloranyl-3-fluoranyl-phenyl)-1~{H}-pyrrole-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YBD  "Create component"  2021-02-16  RCSB  
YBD  "Initial release"   2021-11-17  RCSB  
##
